UBERON:0008814: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=pharyngeal system | |name=pharyngeal arch system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0009145 | |part_of=UBERON:0000922;;UBERON:0009145 | ||
Latest revision as of 18:03, 12 September 2014
| Name: | pharyngeal arch system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph] | ||
| Xrefs: |
| ||
| Synonyms: |
"pharyngeal apparatus" EXACT [] "pharyngeal arch region" EXACT [EHDAA2:0000187] "pharyngeal arches and clefts" RELATED [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0002050(embryonic structure),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000922(embryo),UBERON:0009145(pharyngeal region of foregut) |
Children
| develops from: | UBERON:0001723 (tongue) |
|---|---|
| part of: | UBERON:0002539 (pharyngeal arch),UBERON:0004117 (pharyngeal pouch),UBERON:0007690 (early pharyngeal endoderm),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0010046 (entire pharyngeal arch associated mesenchyme) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008814 (pharyngeal arch system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.66e-65 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_e1afcaae9a92c2d9dd9e00ba2e0564b4 | p4@uc009bpa.1 |
| 1.66e-65 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_e1afcaae9a92c2d9dd9e00ba2e0564b4 | p4@uc009bpa.1 |
| 1.86e-64 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_56ec1465fa383f92c69269f83ef68e85 | p8@uc009bpa.1 |
| 1.86e-64 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_56ec1465fa383f92c69269f83ef68e85 | p8@uc009bpa.1 |
| 8.23e-63 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_92275059976a61020b4892869d9d31c3 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 8.23e-63 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_92275059976a61020b4892869d9d31c3 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.32e-61 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_f982758a87f736a40b950982318584cc | p@chr6:41491752..41491776, - |
| 1.32e-61 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_f982758a87f736a40b950982318584cc | p@chr12:108361918..108361930, - |
| 1.32e-61 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_f982758a87f736a40b950982318584cc | p@chr6:41491752..41491776, - |
| 1.32e-61 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_f982758a87f736a40b950982318584cc | p@chr12:108361918..108361930, - |
| 2.27e-60 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_2e37b8345ce119d6bdcb31a66da2c828 | p2@ENSMUST00000103283 |
| 2.27e-60 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_2e37b8345ce119d6bdcb31a66da2c828 | p2@ENSMUST00000103283 |
| 2.83e-60 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_6e6bf2969bd27b8f0017676e47e9927a | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 2.83e-60 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_6e6bf2969bd27b8f0017676e47e9927a | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 3.96e-59 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f3e3b41ef756e788f6f9f9996a63d38d | p@chr9:44807434..44807445, - |
| 3.96e-59 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f3e3b41ef756e788f6f9f9996a63d38d | p@chr9:44807434..44807445, - |
| 4.91e-59 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_9a99f00c50bec5c4815474ff52244878 | p@chr6:41494001..41494028, + |
| 4.91e-59 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_9a99f00c50bec5c4815474ff52244878 | p@chr6:41494001..41494028, + |
| 1.18e-58 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_62f95e821fed7ff7dc9d81b14f5a3887 | p@chr9:44809185..44809215, - |
| 1.18e-58 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_62f95e821fed7ff7dc9d81b14f5a3887 | p@chr9:44809185..44809215, - |
| 1.22e-58 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_df0c3f6792ba749fde20b07c6dd9c556 | p11@Prkcq |
| 1.22e-58 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_df0c3f6792ba749fde20b07c6dd9c556 | p11@Prkcq |
| 3.55e-58 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_fe110d798c4ec68a58d22b0471e973be | p@chr14:54791784..54791787, + |
| 3.55e-58 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_fe110d798c4ec68a58d22b0471e973be | p@chr14:54791784..54791787, + |
| 6.17e-58 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_4d9e8e60c1ca46872441d35f911a9ab0 | p1@ENSMUST00000103263 |
| 6.17e-58 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_4d9e8e60c1ca46872441d35f911a9ab0 | p1@ENSMUST00000103263 |
| 1.17e-57 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_a4dd9b6b33cbc7184a1308c3601b87c3 | p5@Themis |
| 1.17e-57 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_a4dd9b6b33cbc7184a1308c3601b87c3 | p5@Themis |
| 1.36e-57 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_dad43663d5c76119c96e0317dd1c1a9c | p5@uc009bpa.1 |
| 1.36e-57 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_dad43663d5c76119c96e0317dd1c1a9c | p5@uc009bpa.1 |
| 1.46e-57 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_7ee4dfe786eef2c94044a2cd0fe09d92 | p@chr9:44793518..44793537, + |
| 1.46e-57 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_7ee4dfe786eef2c94044a2cd0fe09d92 | p@chr9:44793518..44793537, + |
| 1.87e-57 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_fe868b0d6d6e543cd5362b32177a5398 | p@chr6:41071548..41071565, + |
| 1.87e-57 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_fe868b0d6d6e543cd5362b32177a5398 | p@chr6:41071548..41071565, + |
| 3.74e-57 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_86b9b81a6b205df22b8abfb5457b79de | p2@uc009bnp.1, p2@uc012eki.1 |
| 3.74e-57 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_86b9b81a6b205df22b8abfb5457b79de | p2@uc009bnp.1, p2@uc012eki.1 |
| 2.11e-56 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_9ec55d231a55de6e783881bc24b09897 | p5@Tcf7 |
| 2.11e-56 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_9ec55d231a55de6e783881bc24b09897 | p5@Tcf7 |
| 7.76e-56 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_5a757e913594f6bdf58c91e3edf28618 | p@chr14:61328148..61328173, + |
| 7.76e-56 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_5a757e913594f6bdf58c91e3edf28618 | p@chr14:61328148..61328173, + |
| 1.22e-55 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_00a18f93e11e472402520bd114b62c4d | p2@uc009bpa.1 |
| 1.22e-55 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_00a18f93e11e472402520bd114b62c4d | p2@uc009bpa.1 |
| 1.4e-55 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_d99a93d80fbe956a2b4de797c2eb7e06 | p2@Sh2d1a |
| 1.4e-55 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_d99a93d80fbe956a2b4de797c2eb7e06 | p2@Sh2d1a |
| 2.37e-55 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_863e71d40fe0185f8c167b9ab9e47c75 | p1@uc012ekr.1 |
| 2.37e-55 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_863e71d40fe0185f8c167b9ab9e47c75 | p1@uc012ekr.1 |
| 2.97e-55 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_f7f896516f0fce6d084909085620c372 | p2@1810009J06Rik |
| 2.97e-55 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_f7f896516f0fce6d084909085620c372 | p2@1810009J06Rik |
| 4.31e-55 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_69a54705a17b1a3b7f0cafb084d63a25 | p1@uc012ekk.1 |
| 4.31e-55 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_69a54705a17b1a3b7f0cafb084d63a25 | p1@uc012ekk.1 |
| 5.01e-55 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_5ad18334b313c977acd2794abb2ba728 | p1@ENSMUST00000103265 |
| 5.01e-55 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_5ad18334b313c977acd2794abb2ba728 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 5.01e-55 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_5ad18334b313c977acd2794abb2ba728 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 5.01e-55 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_5ad18334b313c977acd2794abb2ba728 | p1@ENSMUST00000103265 |
| 1.07e-54 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_593eab50eead7ea779f8970df6429116 | p@chr7:133512043..133512060, - |
| 1.07e-54 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_593eab50eead7ea779f8970df6429116 | p@chr7:133512043..133512060, - |
| 1.32e-54 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_13f2eb2c586e0fe4112394f05fe958a7 | p2@Gm5409 |
| 1.32e-54 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_13f2eb2c586e0fe4112394f05fe958a7 | p2@Gm5409 |
| 2.0e-54 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_815b0dd9ac405dbdff1f18064302cd20 | p5@Trat1 |
| 2.0e-54 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_815b0dd9ac405dbdff1f18064302cd20 | p5@Trat1 |
| 2.2e-54 | FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_30f09a6a98e25ee4f33a8e38b01a403c | p4@Trat1 |
| 2.2e-54 | FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_30f09a6a98e25ee4f33a8e38b01a403c | p4@Trat1 |
| 2.23e-54 | FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_0a28bdf60a95ae57d50c6797dc411ea3 | p@chr6:41489240..41489252, + |
| 2.23e-54 | FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_0a28bdf60a95ae57d50c6797dc411ea3 | p@chr6:41489240..41489252, + |
| 4.16e-54 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_a947a7189afd1402f18661e524b1c930 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 4.16e-54 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_a947a7189afd1402f18661e524b1c930 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 4.37e-54 | FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_99c5adad98b7b3704137df8a8167f4e0 | p@chr6:41494376..41494389, - |
| 4.37e-54 | FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_99c5adad98b7b3704137df8a8167f4e0 | p1@ENSMUST00000103282 |
| 4.37e-54 | FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_99c5adad98b7b3704137df8a8167f4e0 | p@chr6:41494376..41494389, - |
| 4.37e-54 | FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_99c5adad98b7b3704137df8a8167f4e0 | p1@ENSMUST00000103282 |
| 5.42e-54 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_6f54964715b9e12793c287c0630548fc | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 5.42e-54 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_6f54964715b9e12793c287c0630548fc | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 5.43e-54 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_2e5a27d8d6777b85d3dd20689a07eb0b | p@chr14:54794540..54794554, + |
| 5.43e-54 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_2e5a27d8d6777b85d3dd20689a07eb0b | p@chr14:54794540..54794554, + |
| 5.9e-54 | FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_ebea1042e303702f7bd804b76db12406 | p@chr6:41491801..41491815, - |
| 5.9e-54 | FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_ebea1042e303702f7bd804b76db12406 | p@chr6:41491801..41491815, - |
| 5.9e-54 | FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_ebea1042e303702f7bd804b76db12406 | p@chr14:54496363..54496388, + |
| 5.9e-54 | FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_ebea1042e303702f7bd804b76db12406 | p@chr14:54496363..54496388, + |
| 6.18e-54 | FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_af503fca074db968db9dd64274eb434e | p@chr6:41492643..41492662, + |
| 6.18e-54 | FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_af503fca074db968db9dd64274eb434e | p@chr6:41492643..41492662, + |
| 6.96e-54 | FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_99a06687be877068c4b6e8f15f565efe | p1@Il13 |
| 6.96e-54 | FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_99a06687be877068c4b6e8f15f565efe | p1@Il13 |
| 7.53e-54 | FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_985568474858bd9e4c25a13f63863d60 | p@chr6:41492605..41492621, + |
| 7.53e-54 | FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_985568474858bd9e4c25a13f63863d60 | p@chr6:41492605..41492621, + |
| 7.54e-54 | FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_e5c49ad77d00e53ef2abd420b4cc53c8 | p7@Lat |
| 7.54e-54 | FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_e5c49ad77d00e53ef2abd420b4cc53c8 | p7@Lat |
| 8.18e-54 | FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_340f25a26c0a746418e1187885c93c76 | p@chr6:41138311..41138333, + |
| 8.18e-54 | FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_340f25a26c0a746418e1187885c93c76 | p@chr6:41138311..41138333, + |
| 1.05e-53 | FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_8b64a711f87737cf74421aa6706ee906 | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.05e-53 | FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_8b64a711f87737cf74421aa6706ee906 | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.16e-53 | FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_0d0f74a4daa5999eb1598a86f042bd47 | p8@Lat |
| 1.16e-53 | FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_0d0f74a4daa5999eb1598a86f042bd47 | p6@uc009bpa.1 |
| 1.16e-53 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_0d0f74a4daa5999eb1598a86f042bd47 | p6@uc009bpa.1 |
| 1.16e-53 | FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_0d0f74a4daa5999eb1598a86f042bd47 | p@chr4:125978325..125978339, - |
| 1.16e-53 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_0d0f74a4daa5999eb1598a86f042bd47 | p8@Lat |
| 1.16e-53 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_0d0f74a4daa5999eb1598a86f042bd47 | p@chr4:125978325..125978339, - |
| 1.01e-52 | FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_df7c5a7741bae7cb4175cedb92989c12 | p2@Cd6 |
| 1.01e-52 | FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_df7c5a7741bae7cb4175cedb92989c12 | p2@Cd6 |
| 1.09e-52 | FFCP PHASE2:Mm9::chr11:52075039..52075066,+#_5c11e5f17926f7bc242853c1fd6b151b | p@chr11:52075039..52075066, + |
| 1.09e-52 | FFCP PHASE1:Mm9::chr11:52075039..52075066,+#_5c11e5f17926f7bc242853c1fd6b151b | p@chr11:52075039..52075066, + |
