FFCP PHASE2:Hg19::chr3:157824202..157824211,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:6474 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:10854 |TSSclas...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=6474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=10854 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=O60902 | ||
|association_with_transcript=80bp_to_ENST00000389589_5end | |association_with_transcript=80bp_to_ENST00000389589_5end | ||
|cluster_id=chr3:157824202..157824211,- | |cluster_id=chr3:157824202..157824211,- | ||
Latest revision as of 08:16, 16 September 2015
| Short description: | p3@SHOX2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_SHOX2_5end |
| Coexpression cluster: | C126_gastrointestinal_argyrophil_smallcell_merkel_bile_insula_brain |
| Association with transcript: | 80bp_to_ENST00000389589_5end |
| EntrezGene: | SHOX2 |
| HGNC: | 10854 |
| UniProt: | O60902 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@SHOX2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| Merkel cell | 4.26e-14 | 2 |
| osteoblast | 2.59e-09 | 11 |
| osteoprogenitor cell | 2.59e-09 | 11 |
| mesenchyme condensation cell | 2.59e-09 | 11 |
Showing 1 to 4 of 4 entries
| Ontology term | p-value | n |
|---|---|---|
| primary palate mesenchyme | 4.89e-08 | 1 |
| pneumatized bone | 4.89e-08 | 1 |
| subdivision of skeleton | 4.89e-08 | 1 |
| intramembranous bone | 4.89e-08 | 1 |
| head bone | 4.89e-08 | 1 |
| dermal bone | 4.89e-08 | 1 |
| irregular bone | 4.89e-08 | 1 |
| mesenchyme derived from head neural crest | 4.89e-08 | 1 |
| facial mesenchyme | 4.89e-08 | 1 |
| head or neck bone | 4.89e-08 | 1 |
Showing 1 to 10 of 39 entries
