Template:F5samples: Difference between revisions
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! [[Property:name|name]] | ! [[Property:name|name]] | ||
| [[name::{{{name}}}]] | | [[name::{{{name}}}]] | ||
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! GenomeView | |||
| [https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Experiments;search={{#replace:{{{id}}}|FF:|}} zenbu] , [https://fantom5-collaboration.gsc.riken.jp/ucsc/cgi-bin/hgTracks?db={{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | hg19 | }}{{#ifeq: {{{sample_species}}} | Mouse (Mus musculus) | mm9 | }}{{#ifeq: {{{sample_species}}} | Rat (Rattus rattus) | rn4 | }}{{#ifeq: {{{sample_species}}} | Dog (Canis lupus familaris) | canFam2 | }}{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | galGal3 | }}&tsCurTab=advancedTab&hgt_tsPage=&hgt_tSearch=search&tsName={{#replace:{{{id}}}|FF:|}} UCSC] | |||
|- | |- | ||
! [[Property:sample_species|species]] | ! [[Property:sample_species|species]] | ||
Revision as of 02:01, 23 February 2012
{{{name}}}
| {{{id}}} | |
|---|---|
| name | {{{name}}} |
| GenomeView | zenbu , UCSC |
| species | {{{sample_species}}} |
| hCAGE | {{{profile_hcage}}} |
| RNA-seq | {{{profile_rnaseq}}} |
| smallRNA seq | {{{profile_srnaseq}}} |
| nanoCAGEscan | {{{profile_cagescan}}} |
| sample detail | |
| strain | {{{sample_strain}}} |
| tissue | {{{sample_tissue}}} |
| dev_stage | {{{sample_dev_stage}}} |
| sex | {{{sample_sex}}} |
| age | {{{sample_age}}} |
| ethnicity | {{{sample_ethnicity}}} |
| cell_type | {{{sample_cell_type}}} |
| cell_line | {{{sample_cell_line}}} |
| collaboration | {{{sample_collaboration}}} |
| Experimental condition | {{{sample_experimental_condition}}} |
| disease | {{{sample_disease}}} |
| cell_lot | {{{sample_cell_lot}}} |
| cell_catalog | {{{sample_cell_catalog}}} |
| company | {{{sample_company}}} |
| donor(cell lot) | {{{sample_donor(cell lot)}}} |
| Note | {{{sample_note}}} |
| RNA info | |
| sample_id | {{{sample_id}}} |
| tube_id | {{{rna_tube_id}}} |
| box | {{{rna_box}}} |
| position | {{{rna_position}}} |
| lot_number | {{{rna_lot_number}}} |
| catalog_number | {{{rna_catalog_number}}} |
| RIN | {{{rna_rin}}} |
| OD260/230 | {{{rna_od260/230}}} |
| OD260/280 | {{{rna_od260/280}}} |
| sample_type | {{{rna_sample_type}}} |
| extraction_protocol | {{{rna_extraction_protocol}}} |
| weight_ug | {{{rna_weight_ug}}} |
| concentration | {{{rna_concentration}}} |
Its transcriptome profile can be found in Genome Browsers ( zenbu and UCSC )
|
Specific TFs
|
Specific genes
|
Specific TSS regions
|
Specific motifs
|
De-novo motifs
|
Parent Ontologies
Top Motifs
{{#top_motifs_table01: {{{top_motifs}}}}}
