UBERON:0001066: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001066
|name=intervertebral disk
|namespace=
|def="cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilagin...") |
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|part_of=UBERON:0001468 | |part_of=UBERON:0001468 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:11, 15 June 2012
| Name: | intervertebral disk | ||
|---|---|---|---|
| Definition: | "cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilaginous joint to allow slight movement of the vertebrae, and acts as a ligament to hold the vertebrae together[WP]." [Wikipedia:Intervertebral_disk] | ||
| Xrefs: |
| ||
| Synonyms: |
"discus intervertebralis" EXACT [FMA:10446, FMA:TA] "intervertebral disc" EXACT [] "intervertebral fibrocartilage" RELATED [BTO:0003625] "spinal disc" EXACT [Wikipedia:Spinal_disc] "spinal disk" RELATED [BTO:0003625] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_10446-MA_0000110 | ||
| Subset: | uberon_slim |
200px-Gray301.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ),UBERON:0004120(mesoderm-derived structure),UBERON:0005174(dorsal region element) |
|---|---|
| part_of: | UBERON:0001468(intervertebral joint) |
Children
| part of: | UBERON:0002242 (nucleus pulposus),UBERON:0004715 (annulus fibrosus disci intervertebralis) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001066 (intervertebral disk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_f44e5139bae3beeb1f84528294b0c9f7 | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_f44e5139bae3beeb1f84528294b0c9f7 | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_d374b5525b9af3646ed9b0929b3355cc | p4@PAX1 |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_d374b5525b9af3646ed9b0929b3355cc | p4@PAX1 |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_ccecfca0a8b013df13b1f6872d22b982 | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_ccecfca0a8b013df13b1f6872d22b982 | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_64642679cccfb2997649790ac3fb5ac4 | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_64642679cccfb2997649790ac3fb5ac4 | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_976d67289c1f679bdf563ce0668ada77 | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_976d67289c1f679bdf563ce0668ada77 | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_a506377f4c19092be2dbc8c18ee4a715 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_a506377f4c19092be2dbc8c18ee4a715 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_4d603d1ce18b78f20202d3287e5b6105 | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_4d603d1ce18b78f20202d3287e5b6105 | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_a1bb90b83937581f00d0367a6eac70b0 | p15@SNED1 |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_a1bb90b83937581f00d0367a6eac70b0 | p15@SNED1 |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_ce0c2d57f5c2a03828a1fbf5b892fa6d | p20@CAPZB |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_ce0c2d57f5c2a03828a1fbf5b892fa6d | p20@CAPZB |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_0d6b0b4c2761d54ff3839d268d7a378a | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_0d6b0b4c2761d54ff3839d268d7a378a | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_5d7e02311951cfba3a6de06c447fd70c | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_5d7e02311951cfba3a6de06c447fd70c | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_a331fd2f1c3debf89cfcfe791a7264aa | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_a331fd2f1c3debf89cfcfe791a7264aa | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_b534b41da81c13ce6de7570e7dafa56d | p6@SIX4 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_b534b41da81c13ce6de7570e7dafa56d | p6@SIX4 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_cc7cc354c15127618342bcd8a4ed6820 | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_cc7cc354c15127618342bcd8a4ed6820 | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_a9ffaf2be11085ec68c5e8c4730ef5d2 | p3@PAX1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_a9ffaf2be11085ec68c5e8c4730ef5d2 | p3@PAX1 |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_b69d6d8afd1a22a6f5b4567cbc99ae2e | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_b69d6d8afd1a22a6f5b4567cbc99ae2e | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_d0372fa1f7be2280b28cc8b0603e9a6d | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_d0372fa1f7be2280b28cc8b0603e9a6d | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_4371e688c332abd6ad5aac385b0f6dc2 | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_4371e688c332abd6ad5aac385b0f6dc2 | p19@HDAC9 |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_a0d3d55ea4e09d98fcc78fbe2ffbbb5b | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_a0d3d55ea4e09d98fcc78fbe2ffbbb5b | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_d70fa75fa58095d3ea0e530bc8a7bd2a | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_d70fa75fa58095d3ea0e530bc8a7bd2a | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_8843d8fd77d7ddca669c7e828fcf666b | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_8843d8fd77d7ddca669c7e828fcf666b | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_6b5064f6f9a31f7e0da49a2c5c5d5e8d | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_6b5064f6f9a31f7e0da49a2c5c5d5e8d | p1@MGC27382 |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_fa8e4c739a40a9360fd599f9b1ce0d45 | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_fa8e4c739a40a9360fd599f9b1ce0d45 | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_77d92016a3a09ba5be83a2854d85be12 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_77d92016a3a09ba5be83a2854d85be12 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_77d92016a3a09ba5be83a2854d85be12 | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_77d92016a3a09ba5be83a2854d85be12 | p@chr9:33028063..33028067, - |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_4846cff8daee7328f4a3f63bae0dc572 | p1@PAX1 |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_4846cff8daee7328f4a3f63bae0dc572 | p1@PAX1 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_a6da34f909ffd76f093df2fe7e393e26 | p5@PTGFR |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_a6da34f909ffd76f093df2fe7e393e26 | p5@PTGFR |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_dc21ddd42e5f6800365a3902bbba7cf8 | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_dc21ddd42e5f6800365a3902bbba7cf8 | p@chr2:241897363..241897398, + |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_d273976ab0a18b9e48acfa60e6a1c9fb | p2@PAX1 |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_d273976ab0a18b9e48acfa60e6a1c9fb | p2@PAX1 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_e73b5dc87d4306b29a99a4360534f275 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_e73b5dc87d4306b29a99a4360534f275 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_e73b5dc87d4306b29a99a4360534f275 | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_e73b5dc87d4306b29a99a4360534f275 | p@chr5:140887761..140887777, + |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_7fff913b9fa8e6dd6fe690a262f1259b | p4@NUP54 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_7fff913b9fa8e6dd6fe690a262f1259b | p4@NUP54 |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_be59670c9932f979a1e08c80f94a1e4c | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_be59670c9932f979a1e08c80f94a1e4c | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_ea060c514aac601df53800f635c36ffd | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_ea060c514aac601df53800f635c36ffd | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_8eb7419ef8f88abffd55381947bb7f46 | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_8eb7419ef8f88abffd55381947bb7f46 | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_750f71df064425496f128ca14d8694e6 | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_750f71df064425496f128ca14d8694e6 | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_21917a3c7ac00e6af16fc0eb0738cd52 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_21917a3c7ac00e6af16fc0eb0738cd52 | p2@ENST00000518706 |
| 2.96e-37 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_23cc93890b2ea4c605e859f1c2137bde | p1@ENST00000436845 |
| 2.96e-37 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_23cc93890b2ea4c605e859f1c2137bde | p1@ENST00000436845 |
| 6.92e-37 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_e7b738b660a00850522dc1b665fb07f4 | p12@CDK5RAP2 |
| 6.92e-37 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_e7b738b660a00850522dc1b665fb07f4 | p12@CDK5RAP2 |
| 3.28e-36 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_4ea36373b8f73438c2e7c74f5295cb02 | p1@ENST00000413519 |
| 3.28e-36 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_4ea36373b8f73438c2e7c74f5295cb02 | p1@ENST00000413519 |
| 9.62e-35 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_dafeab5abc8807bbf5ec6483dd899e96 | p4@PAX9 |
| 9.62e-35 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_dafeab5abc8807bbf5ec6483dd899e96 | p4@PAX9 |
| 1.8e-34 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_c920ee3abfd2fd38eaf8bc175da8252c | p@chr7:100202784..100202796, - |
| 1.8e-34 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_c920ee3abfd2fd38eaf8bc175da8252c | p@chr7:100202784..100202796, - |
| 3.69e-34 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_84ffe853fe6702b5e7f125f1c6347ef8 | p8@HOXC6 |
| 3.69e-34 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_84ffe853fe6702b5e7f125f1c6347ef8 | p8@HOXC6 |
| 5.52e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_adfad40cac0239c327ec8bbfc3411644 | p6@CCDC86 |
| 5.52e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_adfad40cac0239c327ec8bbfc3411644 | p6@CCDC86 |
| 1.43e-33 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_4e10f1d03253c3e169c756f15543124e | p@chr20:21695435..21695452, + |
| 1.43e-33 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_4e10f1d03253c3e169c756f15543124e | p@chr20:21695435..21695452, + |
| 5.36e-33 | FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_cf6f55555cddcd168e3cc38397971564 | p@chr16:70795228..70795237, + |
| 5.36e-33 | FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_cf6f55555cddcd168e3cc38397971564 | p@chr16:70795228..70795237, + |
| 1.05e-32 | FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_c67c79b30ede90951c77c32b9b1416ac | p@chr3:158384350..158384362, - |
| 1.05e-32 | FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_c67c79b30ede90951c77c32b9b1416ac | p@chr3:158384350..158384362, - |
| 1.7e-32 | FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_ad96ef3ce12a02e6b2f082e1483a3b19 | p9@CYTIP |
| 1.7e-32 | FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_ad96ef3ce12a02e6b2f082e1483a3b19 | p9@CYTIP |
| 2.34e-32 | FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_8c3557615bed4f1744e8b83dcd2c0660 | p@chr18:12012068..12012098, + |
| 2.34e-32 | FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_8c3557615bed4f1744e8b83dcd2c0660 | p@chr18:12012068..12012098, + |
| 2.79e-31 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_d3b4676ad757f657b9c537cfbf1c6d44 | p1@ENST00000555639 |
| 2.79e-31 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_d3b4676ad757f657b9c537cfbf1c6d44 | p1@ENST00000555639 |
