Personal tools

UBERON:0001875: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0001875 |name=globus pallidus |namespace= |def="Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the externa...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0001869;;UBERON:0002420;;UBERON:0006514
|part_of=UBERON:0001869;;UBERON:0002420;;UBERON:0006514
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:13, 15 June 2012

Name:globus pallidus
Definition:"Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle[NIF]. Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA]." [FMA:61835, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus]
Xrefs:
links:

BTO:0002246
EFO:0000905
EV:0100188
FMA:61835
GAID:668
[1]
MA:0000890
MAT:0000510
MESH:A.08.186.211.730.885.105.487.397
ncithesaurus:Globus_Pallidus
NIF_GrossAnatomy:birnlex_1234

SCTID:362361005
Synonyms: "pale body" EXACT [NIF_GrossAnatomy:birnlex_1234]
"paleostriatum" EXACT [Wikipedia:Globus_pallidus]
"pallidium" RELATED [Wikipedia:Globus_pallidus]
"pallidum" RELATED [GO:0021759, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus]
Comments:BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN10:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus
Alt_id: UBERON:FMA_61835-MA_0000890
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002308(nucleus of brain),UBERON:0009663(telencephalic nucleus)
part_of:UBERON:0001869(cerebral hemisphere),UBERON:0002420(basal ganglion),UBERON:0006514(pallidum)



Children

is a:FF:10364-105F4 (globus pallidus, newborn, donor10223),FF:10367-105F7 (globus pallidus, adult, donor10258)
derives from:FF:0010161 (human globus pallidus - adult donor sample)
part of:FF:0010161 (human globus pallidus - adult donor sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001875 (globus pallidus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_5ffd25a21571ddc8e603b656a364cc51p1@GNRH1
1.55e-98FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_5ffd25a21571ddc8e603b656a364cc51p1@GNRH1
2.34e-79FFCP PHASE2:Hg19::chr8:112039724..112039729,-#_0f68adc1a9e33584d35848e013f238c5p5@ENST00000524283
2.34e-79FFCP PHASE1:Hg19::chr8:112039724..112039729,-#_0f68adc1a9e33584d35848e013f238c5p5@ENST00000524283
2.34e-79FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_0f68adc1a9e33584d35848e013f238c5p@chr4:16728994..16729009, +
2.34e-79FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_0f68adc1a9e33584d35848e013f238c5p@chr4:16728994..16729009, +
5.22e-79FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_7ea86f22c76a3e358be4bf0d4f6330c8p4@C5orf64
5.22e-79FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_7ea86f22c76a3e358be4bf0d4f6330c8p4@C5orf64
2.84e-66FFCP PHASE2:Hg19::chr8:53314470..53314473,-#_c0c534f04cc23e7754c6be104e9e1f7ep@chr8:53314470..53314473, -
2.84e-66FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_c0c534f04cc23e7754c6be104e9e1f7ep@chr8:57353676..57353688, -
2.84e-66FFCP PHASE1:Hg19::chr8:53314470..53314473,-#_c0c534f04cc23e7754c6be104e9e1f7ep@chr8:53314470..53314473, -
2.84e-66FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_c0c534f04cc23e7754c6be104e9e1f7ep@chr8:57353676..57353688, -
3.58e-57FFCP PHASE2:Hg19::chr12:57979084..57979088,+#_97445cac8fbeccadbabc7d36d071d298p5@uc001sos.2
3.58e-57FFCP PHASE1:Hg19::chr12:57979084..57979088,+#_97445cac8fbeccadbabc7d36d071d298p5@uc001sos.2
4.77e-57FFCP PHASE2:Hg19::chr14:68030467..68030470,+#_1751681cf0b92c592eeaa092c87587dbp@chr14:68030467..68030470, +
4.77e-57FFCP PHASE1:Hg19::chr14:68030467..68030470,+#_1751681cf0b92c592eeaa092c87587dbp@chr14:68030467..68030470, +
6.36e-57FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_0d9bcc4f91c82cf1df00ca7d2f6dd793p@chr2:234077664..234077672, +
6.36e-57FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_0d9bcc4f91c82cf1df00ca7d2f6dd793p@chr2:234077664..234077672, +
2.0e-56FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_73976d7db5dd33b9574ec17c4f2e6759p@chr2:7112752..7112770, +
2.0e-56FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_73976d7db5dd33b9574ec17c4f2e6759p@chr2:7112752..7112770, +
2.0e-56FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_73976d7db5dd33b9574ec17c4f2e6759p3@ENST00000413244
2.0e-56FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_73976d7db5dd33b9574ec17c4f2e6759p3@ENST00000413244
2.42e-50FFCP PHASE2:Hg19::chr2:211384439..211384442,+#_7081cf46a8aab02c7f2855097cb1f094p@chr2:211384439..211384442, +
2.42e-50FFCP PHASE1:Hg19::chr2:211384439..211384442,+#_7081cf46a8aab02c7f2855097cb1f094p@chr2:211384439..211384442, +
2.74e-50FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_7ac13d378d6813e55dc8457ed21a684dp@chr1:65776926..65776928, +
2.74e-50FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_7ac13d378d6813e55dc8457ed21a684dp@chr1:65776926..65776928, +
4.0e-50FFCP PHASE2:Hg19::chr2:44994986..44994992,-#_97904c09a756f5f630bcda0489ed2634p@chr2:44994986..44994992, -
4.0e-50FFCP PHASE1:Hg19::chr2:44994986..44994992,-#_97904c09a756f5f630bcda0489ed2634p@chr2:44994986..44994992, -
4.52e-50FFCP PHASE2:Hg19::chr7:11676048..11676067,-#_ee811d041370937c54b570dfe82fbe24p23@THSD7A
4.52e-50FFCP PHASE1:Hg19::chr1:110546475..110546482,+#_ee811d041370937c54b570dfe82fbe24p27@AHCYL1
4.52e-50FFCP PHASE1:Hg19::chr7:11676048..11676067,-#_ee811d041370937c54b570dfe82fbe24p23@THSD7A
4.52e-50FFCP PHASE2:Hg19::chr3:196731042..196731058,-#_ee811d041370937c54b570dfe82fbe24p6@MFI2
4.52e-50FFCP PHASE2:Hg19::chr1:160111883..160111891,+#_ee811d041370937c54b570dfe82fbe24p@chr1:160111883..160111891, +
4.52e-50FFCP PHASE2:Hg19::chr9:88473657..88473661,+#_ee811d041370937c54b570dfe82fbe24p@chr9:88473657..88473661, +
4.52e-50FFCP PHASE2:Hg19::chrX:2291152..2291163,-#_ee811d041370937c54b570dfe82fbe24p@chrX:2291152..2291163, -
4.52e-50FFCP PHASE2:Hg19::chr1:110546475..110546482,+#_ee811d041370937c54b570dfe82fbe24p27@AHCYL1
4.52e-50FFCP PHASE2:Hg19::chr4:16729019..16729026,+#_ee811d041370937c54b570dfe82fbe24p@chr4:16729019..16729026, +
4.52e-50FFCP PHASE1:Hg19::chr3:196731042..196731058,-#_ee811d041370937c54b570dfe82fbe24p6@MFI2
4.52e-50FFCP PHASE1:Hg19::chr4:16729019..16729026,+#_ee811d041370937c54b570dfe82fbe24p@chr4:16729019..16729026, +
4.52e-50FFCP PHASE1:Hg19::chr9:88473657..88473661,+#_ee811d041370937c54b570dfe82fbe24p@chr9:88473657..88473661, +
4.52e-50FFCP PHASE1:Hg19::chrX:2291152..2291163,-#_ee811d041370937c54b570dfe82fbe24p@chrX:2291152..2291163, -
4.52e-50FFCP PHASE2:Hg19::chr12:79843826..79843829,+#_ee811d041370937c54b570dfe82fbe24p@chr12:79843826..79843829, +
4.52e-50FFCP PHASE1:Hg19::chr1:160111883..160111891,+#_ee811d041370937c54b570dfe82fbe24p@chr1:160111883..160111891, +
4.52e-50FFCP PHASE1:Hg19::chr12:79843826..79843829,+#_ee811d041370937c54b570dfe82fbe24p@chr12:79843826..79843829, +
5.15e-50FFCP PHASE2:Hg19::chr15:30305145..30305156,+#_cb4464797b966dd23c69bc725cde8e82p@chr15:30305145..30305156, +
5.15e-50FFCP PHASE1:Hg19::chr15:30305145..30305156,+#_cb4464797b966dd23c69bc725cde8e82p@chr15:30305145..30305156, +
8.5e-50FFCP PHASE1:Hg19::chr20:45062233..45062265,+#_10699a72cb2e235f6b2369491de39693p1@AK054905
8.5e-50FFCP PHASE2:Hg19::chr20:45062233..45062265,+#_10699a72cb2e235f6b2369491de39693p1@AK054905
1.09e-49FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_2ad8cf299a2c68ee626fdf4764e18a1fp10@PTPN5
1.09e-49FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_2ad8cf299a2c68ee626fdf4764e18a1fp10@PTPN5
2.04e-45FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_4aa7188410aab400f19e2d752e3cc5c9p@chr3:42687264..42687266, -
2.04e-45FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_4aa7188410aab400f19e2d752e3cc5c9p@chr3:42687264..42687266, -
7.83e-45FFCP PHASE1:Hg19::chr7:92123292..92123295,+#_ecd0f8e1ed639fe3205d8f78e052e67ap@chr7:92123292..92123295, +
7.83e-45FFCP PHASE1:Hg19::chr1:109924481..109924486,-#_ecd0f8e1ed639fe3205d8f78e052e67ap@chr1:109924481..109924486, -
7.83e-45FFCP PHASE2:Hg19::chr4:648979..648991,-#_ecd0f8e1ed639fe3205d8f78e052e67ap1@ENST00000489312
7.83e-45FFCP PHASE1:Hg19::chr4:648979..648991,-#_ecd0f8e1ed639fe3205d8f78e052e67ap1@ENST00000489312
7.83e-45FFCP PHASE2:Hg19::chr1:109924481..109924486,-#_ecd0f8e1ed639fe3205d8f78e052e67ap@chr1:109924481..109924486, -
7.83e-45FFCP PHASE2:Hg19::chr7:92123292..92123295,+#_ecd0f8e1ed639fe3205d8f78e052e67ap@chr7:92123292..92123295, +
9.79e-45FFCP PHASE1:Hg19::chr8:53313114..53313126,-#_89650411177b2e3967c4cb679ce5486dp@chr8:53313114..53313126, -
9.79e-45FFCP PHASE2:Hg19::chr8:53313114..53313126,-#_89650411177b2e3967c4cb679ce5486dp@chr8:53313114..53313126, -
1.22e-44FFCP PHASE1:Hg19::chr8:53312268..53312283,-#_62b25f9dc82d426f2f181562ba82c350p@chr8:53312268..53312283, -
1.22e-44FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_62b25f9dc82d426f2f181562ba82c350p@chr3:16851273..16851310, +
1.22e-44FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_62b25f9dc82d426f2f181562ba82c350p@chr3:16851273..16851310, +
1.22e-44FFCP PHASE2:Hg19::chr8:53312268..53312283,-#_62b25f9dc82d426f2f181562ba82c350p@chr8:53312268..53312283, -
1.22e-44FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_62b25f9dc82d426f2f181562ba82c350p@chr7:67899920..67899958, -
1.22e-44FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_62b25f9dc82d426f2f181562ba82c350p@chr7:67899920..67899958, -
1.53e-44FFCP PHASE2:Hg19::chrX:119589796..119589800,-#_e7e421d10bd7578130b5e3a9c75a9079p@chrX:119589796..119589800, -
1.53e-44FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_e7e421d10bd7578130b5e3a9c75a9079p5@ANO3
1.53e-44FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_e7e421d10bd7578130b5e3a9c75a9079p5@ANO3
1.53e-44FFCP PHASE1:Hg19::chrX:119589796..119589800,-#_e7e421d10bd7578130b5e3a9c75a9079p@chrX:119589796..119589800, -
1.91e-44FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_9085eda856dad496bfe09dcc76960bfdp@chr17:19390234..19390251, +
1.91e-44FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_9085eda856dad496bfe09dcc76960bfdp4@ENST00000515519
1.91e-44FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_9085eda856dad496bfe09dcc76960bfdp4@ENST00000458087, p4@uc003tew.1
1.91e-44FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_9085eda856dad496bfe09dcc76960bfdp@chr17:19390234..19390251, +
1.91e-44FFCP PHASE2:Hg19::chr9:139907538..139907555,-#_9085eda856dad496bfe09dcc76960bfdp25@ABCA2
1.91e-44FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_9085eda856dad496bfe09dcc76960bfdp4@ENST00000515519
1.91e-44FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_9085eda856dad496bfe09dcc76960bfdp4@ENST00000458087, p4@uc003tew.1
1.91e-44FFCP PHASE1:Hg19::chr9:139907538..139907555,-#_9085eda856dad496bfe09dcc76960bfdp25@ABCA2
2.98e-44FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_1b101a36b2249208887a673e87f632b9p8@SEMA3B
2.98e-44FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_1b101a36b2249208887a673e87f632b9p8@SEMA3B
2.98e-44FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_1b101a36b2249208887a673e87f632b9p28@ARPP21
2.98e-44FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_1b101a36b2249208887a673e87f632b9p28@ARPP21
1.34e-40FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_89db5c919cec3d4b813ad65b311b9285p@chr19:35789028..35789044, +
1.34e-40FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_89db5c919cec3d4b813ad65b311b9285p@chr19:35789028..35789044, +
2.01e-40FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_3b1fab377a1a4c8c2e4b5cfe25dd2b89p@chr6:166076645..166076657, -
2.01e-40FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_3b1fab377a1a4c8c2e4b5cfe25dd2b89p@chr6:166076645..166076657, -
2.46e-40FFCP PHASE2:Hg19::chr16:51302023..51302029,-#_65e0c612ae2156b16595a5d89798aec5p@chr16:51302023..51302029, -
2.46e-40FFCP PHASE1:Hg19::chr16:51302023..51302029,-#_65e0c612ae2156b16595a5d89798aec5p@chr16:51302023..51302029, -
3.01e-40FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_f4e1329758013b06fa259de4d6aa6d4ep@chr11:119846813..119846826, +
3.01e-40FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_f4e1329758013b06fa259de4d6aa6d4ep@chr11:119846813..119846826, +
3.68e-40FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_8be75ad4494dbb0fa4811b16c94222fep6@PTPN5
3.68e-40FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_8be75ad4494dbb0fa4811b16c94222fep2@ENST00000413244
3.68e-40FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_8be75ad4494dbb0fa4811b16c94222fep2@ENST00000413244
3.68e-40FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_8be75ad4494dbb0fa4811b16c94222fep6@PTPN5
4.49e-40FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_eef6ff007c7205371970f7e8b66754abp@chr6:33161034..33161047, -
4.49e-40FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_eef6ff007c7205371970f7e8b66754abp@chr6:33161034..33161047, -
4.49e-40FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_eef6ff007c7205371970f7e8b66754abp4@TTLL7
4.49e-40FFCP PHASE2:Hg19::chr22:50431522..50431538,-#_eef6ff007c7205371970f7e8b66754abp@chr22:50431522..50431538, -
4.49e-40FFCP PHASE1:Hg19::chr22:50431522..50431538,-#_eef6ff007c7205371970f7e8b66754abp@chr22:50431522..50431538, -
4.49e-40FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_eef6ff007c7205371970f7e8b66754abp4@TTLL7

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001875&oldid=1832699"