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UBERON:0001949: Difference between revisions

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Revision as of 17:14, 15 June 2012

Name:gingival epithelium
Definition:"A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
Xrefs:
links:

BTO:0004998
FMA:62423
MA:0001576

ncithesaurus:Gingival_Epithelium
Synonyms: "epithelial tissue of gingiva" EXACT [OBOL:automatic]
"epithelium of gingiva" EXACT []
"gingiva epithelial tissue" EXACT [OBOL:automatic]
"gingiva epithelium" EXACT [OBOL:automatic]
Alt_id: UBERON:FMA_62423-MA_0001576

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000486(multilaminar epithelium),UBERON:0003929(gut epithelium),UBERON:0004121(ectoderm-derived structure),UBERON:0004807(respiratory system epithelium)
part_of:UBERON:0001828(gingiva)



Children

part of:CL:0002621 (gingival epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
  • 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
  • 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001949 (gingival epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data