UBERON:0002241: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002241
|name=chondrocranium
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|def="Anatomical cluster that is part of the cranium and composed entirely of either cartilage, cartilage repl...") |
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Revision as of 17:15, 15 June 2012
| Name: | chondrocranium | ||
|---|---|---|---|
| Definition: | "Anatomical cluster that is part of the cranium and composed entirely of either cartilage, cartilage replacement bones or a mixture of both[ZFA]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." ZFA:0001424 | ||
| Xrefs: |
| ||
| Synonyms: |
"calvarium" RELATED [MA:0000317] "neurocranium" RELATED INCONSISTENT [MA:0000317] | ||
| Comments: | note the definition here specifically mentions cartilage or cartilage replacement bones. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes membrane bones | ||
| Alt_id: | UBERON:FMA_76621-XAO_0003059-ZFA_0001424 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000032(),UBERON:0004765(skeletal element) |
|---|---|
| part_of: | UBERON:0001703(neurocranium) |
Children
| part of: | UBERON:0002517 (basicranium),UBERON:0003112 (olfactory region) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002241 (chondrocranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.23e-66 | FFCP PHASE1:Hg19::chr16:77039159..77039160,-#_7be21ee4cecebfc9239d3416097b7c5a | p@chr16:77039159..77039160, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr16:77039159..77039160,-#_7be21ee4cecebfc9239d3416097b7c5a | p@chr16:77039159..77039160, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:106532542..106532545,-#_7be21ee4cecebfc9239d3416097b7c5a | p15@NUAK1 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:106532542..106532545,-#_7be21ee4cecebfc9239d3416097b7c5a | p15@NUAK1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:46928841..46928843,-#_650e4799382366fcf950be7375363d6f | p@chr19:46928841..46928843, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:46928841..46928843,-#_650e4799382366fcf950be7375363d6f | p@chr19:46928841..46928843, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:62838269..62838272,-#_e1eaad143bf79d3102832024eb6b7676 | p@chr3:62838269..62838272, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:62838269..62838272,-#_e1eaad143bf79d3102832024eb6b7676 | p@chr3:62838269..62838272, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:87342674..87342684,+#_d9a5491fc6c54809f21233c8f79f0535 | p@chr9:87342674..87342684, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:133275558..133275575,+#_d9a5491fc6c54809f21233c8f79f0535 | p@chr6:133275558..133275575, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr22:20239738..20239751,-#_d9a5491fc6c54809f21233c8f79f0535 | p@chr22:20239738..20239751, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr22:20239738..20239751,-#_d9a5491fc6c54809f21233c8f79f0535 | p@chr22:20239738..20239751, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:79611322..79611329,+#_d9a5491fc6c54809f21233c8f79f0535 | p6@AB384875 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:133275558..133275575,+#_d9a5491fc6c54809f21233c8f79f0535 | p@chr6:133275558..133275575, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:79611322..79611329,+#_d9a5491fc6c54809f21233c8f79f0535 | p6@AB384875 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:87342674..87342684,+#_d9a5491fc6c54809f21233c8f79f0535 | p@chr9:87342674..87342684, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr5:94620792..94620803,-#_a60a990e58865afbce3f15769070c0fa | p@chr5:94620792..94620803, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr5:94620792..94620803,-#_a60a990e58865afbce3f15769070c0fa | p@chr5:94620792..94620803, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:10248507..10248511,-#_a60a990e58865afbce3f15769070c0fa | p@chr9:10248507..10248511, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:10375591..10375602,+#_a60a990e58865afbce3f15769070c0fa | p@chr12:10375591..10375602, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:10248507..10248511,-#_a60a990e58865afbce3f15769070c0fa | p@chr9:10248507..10248511, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:10375591..10375602,+#_a60a990e58865afbce3f15769070c0fa | p@chr12:10375591..10375602, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:83429564..83429567,-#_a60a990e58865afbce3f15769070c0fa | p@chr11:83429564..83429567, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:208443938..208443947,-#_a60a990e58865afbce3f15769070c0fa | p@chr1:208443938..208443947, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:208443938..208443947,-#_a60a990e58865afbce3f15769070c0fa | p@chr1:208443938..208443947, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:83429564..83429567,-#_a60a990e58865afbce3f15769070c0fa | p@chr11:83429564..83429567, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr6:46190162..46190170,-#_46ad831a8d389a1ef9d40447aaa48173 | p@chr6:46190162..46190170, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr6:46190162..46190170,-#_46ad831a8d389a1ef9d40447aaa48173 | p@chr6:46190162..46190170, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr4:8014649..8014653,-#_e01358b281c490af0422bf35c0fe3976 | p@chr4:8014649..8014653, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr15:52103928..52103940,+#_e01358b281c490af0422bf35c0fe3976 | p@chr15:52103928..52103940, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr4:8014649..8014653,-#_e01358b281c490af0422bf35c0fe3976 | p@chr4:8014649..8014653, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr15:52103928..52103940,+#_e01358b281c490af0422bf35c0fe3976 | p@chr15:52103928..52103940, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr1:160097523..160097534,+#_49fedb952333e7496e2f2223dcd0c9a0 | p20@ATP1A2 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr1:160097523..160097534,+#_49fedb952333e7496e2f2223dcd0c9a0 | p20@ATP1A2 |
| 3.3e-40 | FFCP PHASE2:Hg19::chr2:17830681..17830687,+#_f9cd70c8da2b812b542e5bf430c9c9af | p@chr2:17830681..17830687, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr4:6437090..6437101,-#_f9cd70c8da2b812b542e5bf430c9c9af | p@chr4:6437090..6437101, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr2:17830681..17830687,+#_f9cd70c8da2b812b542e5bf430c9c9af | p@chr2:17830681..17830687, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr4:6437090..6437101,-#_f9cd70c8da2b812b542e5bf430c9c9af | p@chr4:6437090..6437101, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr16:6729906..6729908,+#_f9cd70c8da2b812b542e5bf430c9c9af | p@chr16:6729906..6729908, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr16:6729906..6729908,+#_f9cd70c8da2b812b542e5bf430c9c9af | p@chr16:6729906..6729908, + |
| 1.84e-34 | FFCP PHASE1:Hg19::chr1:75038668..75038679,-#_ff27a10ca2e6dc15261c298a369eb891 | p17@C1orf173 |
| 1.84e-34 | FFCP PHASE1:Hg19::chr15:43814593..43814598,+#_ff27a10ca2e6dc15261c298a369eb891 | p36@MAP1A |
| 1.84e-34 | FFCP PHASE2:Hg19::chr1:75038668..75038679,-#_ff27a10ca2e6dc15261c298a369eb891 | p17@C1orf173 |
| 1.84e-34 | FFCP PHASE2:Hg19::chr7:130151176..130151185,+#_ff27a10ca2e6dc15261c298a369eb891 | p@chr7:130151176..130151185, + |
| 1.84e-34 | FFCP PHASE1:Hg19::chr7:130151176..130151185,+#_ff27a10ca2e6dc15261c298a369eb891 | p@chr7:130151176..130151185, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr15:43814593..43814598,+#_ff27a10ca2e6dc15261c298a369eb891 | p36@MAP1A |
| 2.58e-34 | FFCP PHASE2:Hg19::chr9:114174370..114174381,-#_c0ea83195e46facf607e4e8b3e21160b | p@chr9:114174370..114174381, - |
| 2.58e-34 | FFCP PHASE1:Hg19::chr9:114174370..114174381,-#_c0ea83195e46facf607e4e8b3e21160b | p@chr9:114174370..114174381, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr5:58148556..58148559,+#_510d799a6d9e98203f3c1570a9cbf42e | p@chr5:58148556..58148559, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr7:78131043..78131064,-#_510d799a6d9e98203f3c1570a9cbf42e | p@chr7:78131043..78131064, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr1:154840487..154840496,-#_510d799a6d9e98203f3c1570a9cbf42e | p13@KCNN3 |
| 3.61e-34 | FFCP PHASE2:Hg19::chr1:154840487..154840496,-#_510d799a6d9e98203f3c1570a9cbf42e | p13@KCNN3 |
| 3.61e-34 | FFCP PHASE2:Hg19::chr7:78131043..78131064,-#_510d799a6d9e98203f3c1570a9cbf42e | p@chr7:78131043..78131064, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr5:58148556..58148559,+#_510d799a6d9e98203f3c1570a9cbf42e | p@chr5:58148556..58148559, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr20:44688143..44688157,+#_855507624a5a2fca513a64ad7fe77985 | p@chr20:44688143..44688157, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:71666699..71666708,-#_855507624a5a2fca513a64ad7fe77985 | p12@B3GAT2 |
| 5.05e-34 | FFCP PHASE2:Hg19::chr20:44688143..44688157,+#_855507624a5a2fca513a64ad7fe77985 | p@chr20:44688143..44688157, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr4:120464080..120464091,+#_855507624a5a2fca513a64ad7fe77985 | p@chr4:120464080..120464091, + |
| 5.05e-34 | FFCP PHASE2:Hg19::chr2:86707340..86707351,+#_855507624a5a2fca513a64ad7fe77985 | p@chr2:86707340..86707351, + |
| 5.05e-34 | FFCP PHASE1:Hg19::chr2:86707340..86707351,+#_855507624a5a2fca513a64ad7fe77985 | p@chr2:86707340..86707351, + |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:71666699..71666708,-#_855507624a5a2fca513a64ad7fe77985 | p12@B3GAT2 |
| 5.05e-34 | FFCP PHASE2:Hg19::chr4:120464080..120464091,+#_855507624a5a2fca513a64ad7fe77985 | p@chr4:120464080..120464091, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr10:102089952..102089973,-#_3ce963163f955b0a2090889774e745eb | p2@PKD2L1 |
| 7.06e-34 | FFCP PHASE2:Hg19::chr7:146192665..146192668,+#_3ce963163f955b0a2090889774e745eb | p@chr7:146192665..146192668, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr18:24434430..24434442,-#_3ce963163f955b0a2090889774e745eb | p15@AQP4 |
| 7.06e-34 | FFCP PHASE1:Hg19::chr18:24434430..24434442,-#_3ce963163f955b0a2090889774e745eb | p15@AQP4 |
| 7.06e-34 | FFCP PHASE2:Hg19::chr10:102089952..102089973,-#_3ce963163f955b0a2090889774e745eb | p2@PKD2L1 |
| 7.06e-34 | FFCP PHASE2:Hg19::chr5:149613437..149613441,-#_3ce963163f955b0a2090889774e745eb | p@chr5:149613437..149613441, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr2:116499014..116499018,+#_3ce963163f955b0a2090889774e745eb | p@chr2:116499014..116499018, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr7:146192665..146192668,+#_3ce963163f955b0a2090889774e745eb | p@chr7:146192665..146192668, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr5:149613437..149613441,-#_3ce963163f955b0a2090889774e745eb | p@chr5:149613437..149613441, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr2:116499014..116499018,+#_3ce963163f955b0a2090889774e745eb | p@chr2:116499014..116499018, + |
| 9.85e-34 | FFCP PHASE2:Hg19::chr8:133141199..133141206,-#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr8:133141199..133141206, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr14:93401419..93401433,+#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr14:93401419..93401433, + |
| 9.85e-34 | FFCP PHASE1:Hg19::chr2:55254526..55254550,-#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr2:55254526..55254550, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr2:210560796..210560807,+#_3c945fe66a118ebeaf1e68e860e6f187 | p50@MAP2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr8:133141199..133141206,-#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr8:133141199..133141206, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chr7:13141010..13141018,+#_3c945fe66a118ebeaf1e68e860e6f187 | p2@ENST00000443947 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr3:16926062..16926073,+#_3c945fe66a118ebeaf1e68e860e6f187 | p10@PLCL2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr14:93401419..93401433,+#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr14:93401419..93401433, + |
| 9.85e-34 | FFCP PHASE2:Hg19::chr7:22391020..22391048,-#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr7:22391020..22391048, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr7:13141010..13141018,+#_3c945fe66a118ebeaf1e68e860e6f187 | p2@ENST00000443947 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr2:55254526..55254550,-#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr2:55254526..55254550, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr7:22391020..22391048,-#_3c945fe66a118ebeaf1e68e860e6f187 | p@chr7:22391020..22391048, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chr2:210560796..210560807,+#_3c945fe66a118ebeaf1e68e860e6f187 | p50@MAP2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr3:16926062..16926073,+#_3c945fe66a118ebeaf1e68e860e6f187 | p10@PLCL2 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr4:21506086..21506087,-#_8de8dedc0389f5bb62a539111cd49d76 | p@chr4:21506086..21506087, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr4:21506086..21506087,-#_8de8dedc0389f5bb62a539111cd49d76 | p@chr4:21506086..21506087, - |
| 9.99e-30 | FFCP PHASE1:Hg19::chr17:1029026..1029035,-#_ca60245bda252d8d2902118149b2a72a | p37@ABR |
| 9.99e-30 | FFCP PHASE1:Hg19::chr11:133818054..133818066,-#_ca60245bda252d8d2902118149b2a72a | p@chr11:133818054..133818066, - |
| 9.99e-30 | FFCP PHASE2:Hg19::chr17:1029026..1029035,-#_ca60245bda252d8d2902118149b2a72a | p37@ABR |
| 9.99e-30 | FFCP PHASE2:Hg19::chr11:133818054..133818066,-#_ca60245bda252d8d2902118149b2a72a | p@chr11:133818054..133818066, - |
| 9.99e-30 | FFCP PHASE2:Hg19::chr2:2754109..2754121,-#_ca60245bda252d8d2902118149b2a72a | p@chr2:2754109..2754121, - |
| 9.99e-30 | FFCP PHASE2:Hg19::chr7:15014398..15014409,-#_ca60245bda252d8d2902118149b2a72a | p19@DGKB |
| 9.99e-30 | FFCP PHASE1:Hg19::chr2:2754109..2754121,-#_ca60245bda252d8d2902118149b2a72a | p@chr2:2754109..2754121, - |
| 9.99e-30 | FFCP PHASE1:Hg19::chr7:15014398..15014409,-#_ca60245bda252d8d2902118149b2a72a | p19@DGKB |
| 1.33e-29 | FFCP PHASE1:Hg19::chr4:88415540..88415543,-#_dbd0d117871a1c53fff531c6fca57263 | p@chr4:88415540..88415543, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr4:88415540..88415543,-#_dbd0d117871a1c53fff531c6fca57263 | p@chr4:88415540..88415543, - |
| 2.37e-29 | FFCP PHASE1:Hg19::chr2:127839576..127839585,-#_0f85aa71b215d01574a619278c18761c | p17@BIN1 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr2:131769317..131769328,+#_0f85aa71b215d01574a619278c18761c | p13@ARHGEF4 |
