Personal tools

UBERON:0002323: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0002323 |name=body cavity |namespace= |def="fluid-filled space between epidermis and outer lining of gut cavity[WP]. In mammals it forms the peritoneal...")
 
No edit summary
Line 21: Line 21:
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:16, 15 June 2012

Name:body cavity
Definition:"fluid-filled space between epidermis and outer lining of gut cavity[WP]. In mammals it forms the peritoneal, pleural, and pericardial cavities." [Wikipedia:Body_cavity]
Xrefs:
links:

AEO:0000186
BTO:0001707
EHDAA2:0000267
FBbt:00005060
FMA:85006
galen:BodyCavity
MA:0002447
ncithesaurus:Cavity
RETIRED_EHDAA2:0003186
SCTID:361348008
TAO:0001438

ZFA:0001438
Synonyms: "celom" RELATED [BTO:0001707]
"coelom" EXACT []
"coelome" RELATED [BTO:0001707]
"coelomic cavity" EXACT [EHDAA2:0000267]
"hemocoel" RELATED [FBbt:00005060]
"space of body compartment" EXACT [FMA:85006]
"ventral body cavity" NARROW []
Comments:editor note: check the FMA placement here; add developmental relationships; check EHDAA2
Alt_id: UBERON:0000169
UBERON:FMA_85006-MA_0002447-ZFA_0001438
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002553(anatomical cavity),UBERON:0004458(body cavity or lining)
develops_from:UBERON:0003886(body cavity precursor)



Children

is a:UBERON:0001179 (peritoneal cavity),UBERON:0003684 (abdominal cavity)
part of:UBERON:0010084 (future diaphragm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002323 (body cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.62e-38FFCP PHASE2:Mm9::chr2:164481543..164481613,+#_c476d53659dcc0a84de698f1f8eaf4eep1@Wfdc10
2.62e-38FFCP PHASE1:Mm9::chr2:164481543..164481613,+#_c476d53659dcc0a84de698f1f8eaf4eep1@Wfdc10
6.02e-38FFCP PHASE2:Mm9::chr16:5227918..5227923,-#_f299323596165775bc70d2a3bf2a7b95p@chr16:5227918..5227923, -
6.02e-38FFCP PHASE1:Mm9::chr16:5227918..5227923,-#_f299323596165775bc70d2a3bf2a7b95p@chr16:5227918..5227923, -
2.43e-34FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_d4430cafccdc36af1e3d238f51874500p7@Tulp2
2.43e-34FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_d4430cafccdc36af1e3d238f51874500p7@Tulp2
1.77e-31FFCP PHASE2:Mm9::chrX:130516261..130516293,-#_cfddf02ea40cf8a9ff61fb03299efd0cp2@Sytl4
1.77e-31FFCP PHASE1:Mm9::chrX:130516261..130516293,-#_cfddf02ea40cf8a9ff61fb03299efd0cp2@Sytl4
3.66e-31FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_2f8b7165ffb6dfb13ecffd22fa097f6cp1@NR5A1
3.66e-31FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_2f8b7165ffb6dfb13ecffd22fa097f6cp1@NR5A1
3.73e-31FFCP PHASE2:Mm9::chr2:104966659..104966672,-#_db829e01e6300a0b78edad8340c78a1ap1@AI314831
3.73e-31FFCP PHASE1:Mm9::chr2:104966659..104966672,-#_db829e01e6300a0b78edad8340c78a1ap1@AI314831
7.49e-31FFCP PHASE1:Mm9::chr2:104966545..104966586,-#_5641ef76a24da59e79c54624e514fbf0p1@ENSMUST00000174870
7.49e-31FFCP PHASE2:Mm9::chr2:104966545..104966586,-#_5641ef76a24da59e79c54624e514fbf0p1@ENSMUST00000174870
1.28e-30FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_675f3f2f315ea511108e73574c12d4e9p3@Fkbp5
1.28e-30FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_675f3f2f315ea511108e73574c12d4e9p3@Fkbp5
7.15e-30FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_3db5d644c59a534f3dedf7384d88a0b9p@chr12:31775417..31775434, -
7.15e-30FFCP PHASE2:Mm9::chr4:141375242..141375280,-#_3db5d644c59a534f3dedf7384d88a0b9p3@Cela2a
7.15e-30FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_3db5d644c59a534f3dedf7384d88a0b9p@chr5:26334211..26334241, +
7.15e-30FFCP PHASE1:Mm9::chr4:141375242..141375280,-#_3db5d644c59a534f3dedf7384d88a0b9p3@Cela2a
7.15e-30FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_3db5d644c59a534f3dedf7384d88a0b9p@chr12:31775417..31775434, -
7.15e-30FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_3db5d644c59a534f3dedf7384d88a0b9p@chr5:26334211..26334241, +
9.19e-30FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_e4f7102e5f77fa68c66b3683fa1c486dp2@Slc25a31
9.19e-30FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_e4f7102e5f77fa68c66b3683fa1c486dp2@Slc25a31
1.02e-29FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_d03f894a48ee4ccaaa33d3dd8ba95430p1@Asz1
1.02e-29FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_d03f894a48ee4ccaaa33d3dd8ba95430p1@Asz1
6.6e-29FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_d775b4575fde8c9c13de67ee4f2d8c3fp6@Folr1
6.6e-29FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_d775b4575fde8c9c13de67ee4f2d8c3fp6@Folr1
8.26e-29FFCP PHASE2:Mm9::chr5:109484637..109484648,+#_cf9f0edad9264f961a47b27b38a95ee0p@chr5:109484637..109484648, +
8.26e-29FFCP PHASE1:Mm9::chr5:109484637..109484648,+#_cf9f0edad9264f961a47b27b38a95ee0p@chr5:109484637..109484648, +
2.59e-28FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_ff171a3c4f117a86cb0a6d0e3496b083p2@Kctd14
2.59e-28FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_ff171a3c4f117a86cb0a6d0e3496b083p2@Kctd14
3.27e-28FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_760983f8a8e7d73dc4e7b15821de28bdp1@Mov10l1
3.27e-28FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_760983f8a8e7d73dc4e7b15821de28bdp1@Mov10l1
4.11e-28FFCP PHASE1:Mm9::chr8:4248188..4248219,+#_396f244db055b30c8710b6a5db5a3063p2@Gm14378
4.11e-28FFCP PHASE2:Mm9::chr8:4248188..4248219,+#_396f244db055b30c8710b6a5db5a3063p2@Gm14378
5.98e-28FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_d8c36e674b5d1c2d8f19c5ff4d7f4949p1@Sycp1
5.98e-28FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_d8c36e674b5d1c2d8f19c5ff4d7f4949p1@Sycp1
6.21e-28FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_ecdc648420bdcf7912d61bfc4cde22a1p4@Fam81a
6.21e-28FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_ecdc648420bdcf7912d61bfc4cde22a1p4@Fam81a
7.94e-28FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_4279a5a69d22a39413c64779e9d13c2ep2@Asz1
7.94e-28FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_4279a5a69d22a39413c64779e9d13c2ep2@Asz1
1.17e-27FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_1beae8125517bf264e84c517c0d7f57bp@chr6:30494986..30494997, +
1.17e-27FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_1beae8125517bf264e84c517c0d7f57bp22@Rgs3
1.17e-27FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_1beae8125517bf264e84c517c0d7f57bp@chr19:58804381..58804392, +
1.17e-27FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_1beae8125517bf264e84c517c0d7f57bp22@Rgs3
1.17e-27FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_1beae8125517bf264e84c517c0d7f57bp@chr6:30494986..30494997, +
1.17e-27FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_1beae8125517bf264e84c517c0d7f57bp3@Cst9
1.17e-27FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_1beae8125517bf264e84c517c0d7f57bp3@Cst9
1.17e-27FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_1beae8125517bf264e84c517c0d7f57bp@chr19:58804381..58804392, +
1.19e-27FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_9e9a510295c9c54375cb5b1e196e2b80p@chr15:102277099..102277126, +
1.19e-27FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_9e9a510295c9c54375cb5b1e196e2b80p@chr15:102277099..102277126, +
1.25e-27FFCP PHASE1:Mm9::chr15:76701495..76701535,-#_f8777a3f2605bb90597e219324c39a67p3@Zfp251
1.25e-27FFCP PHASE2:Mm9::chr15:76701495..76701535,-#_f8777a3f2605bb90597e219324c39a67p3@Zfp251
1.28e-27FFCP PHASE2:Mm9::chr4:129300189..129300196,-#_769376ae19826d16811f3a1b005c86fap3@Ccdc28b
1.28e-27FFCP PHASE1:Mm9::chr4:129300189..129300196,-#_769376ae19826d16811f3a1b005c86fap3@Ccdc28b
1.4e-27FFCP PHASE2:Mm9::chr10:81037444..81037483,+#_6101ff8ea87be42973053c80e1e543d6p5@Tle2
1.4e-27FFCP PHASE1:Mm9::chr10:81037444..81037483,+#_6101ff8ea87be42973053c80e1e543d6p5@Tle2
1.78e-27FFCP PHASE1:Mm9::chr1:157079840..157079859,-#_f09fc61d3f3aeaced45d2f4b3e8b5f99p1@BC034090
1.78e-27FFCP PHASE1:Mm9::chr11:116355895..116355908,-#_f09fc61d3f3aeaced45d2f4b3e8b5f99p4@Prpsap1
1.78e-27FFCP PHASE2:Mm9::chr1:157079840..157079859,-#_f09fc61d3f3aeaced45d2f4b3e8b5f99p1@BC034090
1.78e-27FFCP PHASE2:Mm9::chr11:116355895..116355908,-#_f09fc61d3f3aeaced45d2f4b3e8b5f99p4@Prpsap1
6.09e-27FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_c083e719f8a453e1e6fe868cae5dd6fdp1@Mael
6.09e-27FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_c083e719f8a453e1e6fe868cae5dd6fdp1@Mael
6.1e-27FFCP PHASE1:Mm9::chr7:52741730..52741769,+#_891d20e6fb80426054033bdaa86777b7p2@Tulp2
6.1e-27FFCP PHASE2:Mm9::chr7:52741730..52741769,+#_891d20e6fb80426054033bdaa86777b7p2@Tulp2
7.41e-27FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_bb9908260255856191e2f58458037275p@chr7:149469129..149469146, +
7.41e-27FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_bb9908260255856191e2f58458037275p@chr7:149469129..149469146, +
7.41e-27FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_bb9908260255856191e2f58458037275p1@Fkbp6
7.41e-27FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_bb9908260255856191e2f58458037275p1@Fkbp6
8.1e-27FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_4a6182538a001facac639b066fdebc77p1@Mir202
8.1e-27FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_4a6182538a001facac639b066fdebc77p1@Mir202
1.95e-26FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_1e7b4b8f8d2ac208e2eb4ce191e13aa3p1@Hormad1
1.95e-26FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_1e7b4b8f8d2ac208e2eb4ce191e13aa3p1@Hormad1
2.04e-26FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_b53e43c00050174a9a1e80247f87c7b9p1@Hist1h2aa
2.04e-26FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_b53e43c00050174a9a1e80247f87c7b9p1@Hist1h2aa
2.56e-26FFCP PHASE1:Mm9::chr2:38570011..38570034,-#_ad1dba77032975bd5ac6eb008b89d881p1@Nr5a1
2.56e-26FFCP PHASE2:Mm9::chr2:38570011..38570034,-#_ad1dba77032975bd5ac6eb008b89d881p1@Nr5a1
3.54e-26FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_f4cf7fa42f3aa650c042d0135077ffdfp1@Piwil2
3.54e-26FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_f4cf7fa42f3aa650c042d0135077ffdfp1@Piwil2
3.74e-26FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_f66abac3e0df69eb5131986efc846189p2@KLF17
3.74e-26FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_f66abac3e0df69eb5131986efc846189p2@KLF17
4.11e-26FFCP PHASE2:Mm9::chr2:104966713..104966727,-#_3a74d80f353d0934a66724ac73b00e60p2@AI314831
4.11e-26FFCP PHASE1:Mm9::chr2:104966713..104966727,-#_3a74d80f353d0934a66724ac73b00e60p2@AI314831
4.25e-26FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_f486818150a546083db2749c702d8014p1@Tex12
4.25e-26FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_f486818150a546083db2749c702d8014p1@Tex12
4.45e-26FFCP PHASE1:Mm9::chr2:104966510..104966538,-#_fcb2ceb9f08fc7e22831aab06a0a5639p2@ENSMUST00000174870
4.45e-26FFCP PHASE2:Mm9::chr2:104966510..104966538,-#_fcb2ceb9f08fc7e22831aab06a0a5639p2@ENSMUST00000174870
5.35e-26FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_790c09f78a4249018f9a65b2987d6316p1@Gm949
5.35e-26FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_790c09f78a4249018f9a65b2987d6316p1@Gm949
9.55e-26FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_c999ca245c32fed971efd67708392973p1@Exoc3l2
9.55e-26FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_c999ca245c32fed971efd67708392973p1@Exoc3l2
1.06e-25FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_a5edceb054c3e68f2716b0e00ff75ac2p1@Fam178b
1.06e-25FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_a5edceb054c3e68f2716b0e00ff75ac2p1@Fam178b
1.3e-25FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_ebc7b6f7e9c625fffc19596ad0d2c6edp1@Cst12
1.3e-25FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_ebc7b6f7e9c625fffc19596ad0d2c6edp1@Cst12
1.55e-25FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_1cf9b91bffb31d4a54fbd3d9fb47e0bap1@Tdrd12
1.55e-25FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_1cf9b91bffb31d4a54fbd3d9fb47e0bap1@Tdrd12
1.63e-25FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_a5fe94fc0b365d1547d372d0179cb8c6p4@Taf9b
1.63e-25FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_a5fe94fc0b365d1547d372d0179cb8c6p4@Taf9b

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002323&oldid=1832825"