UBERON:0005291: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005291
|name=embryonic tissue
|namespace=
|def="A portion of tissue that is part of an embryo." [OBOL:automatic]
|xref=
|is_a=UBERON:0000479;;UBERON...") |
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Revision as of 17:22, 15 June 2012
| Name: | embryonic tissue |
|---|---|
| Definition: | "A portion of tissue that is part of an embryo." [OBOL:automatic] |
| Synonyms: |
"developing tissue" RELATED [] "portion of embryonic tissue" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0002050(embryonic structure) |
|---|---|
| part_of: | UBERON:0000922(embryo),UBERON:0002050(embryonic structure) |
Children
| is a: | UBERON:0000076 (external ectoderm),UBERON:0001049 (neural tube),UBERON:0003050 (olfactory placode),UBERON:0003051 (ear vesicle),UBERON:0003056 (pre-chordal neural plate),UBERON:0003071 (eye primordium),UBERON:0003075 (neural plate),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003099 (cranial neural crest),UBERON:0003220 (metanephric mesenchyme),UBERON:0003249 (epithelium of otic placode),UBERON:0003820 (prostate bud),UBERON:0003894 (liver primordium),UBERON:0003922 (pancreatic epithelial bud),UBERON:0004061 (neural tube mantle layer),UBERON:0004117 (pharyngeal pouch),UBERON:0004140 (primary heart field),UBERON:0004141 (heart tube),UBERON:0005062 (neural fold),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme),UBERON:0005295 (sex cord),UBERON:0005333 (mammary bud),UBERON:0005356 (Rathke's pouch),UBERON:0005428 (vagal neural crest),UBERON:0005641 (otocyst epithelium),UBERON:0005866 (pre-cartilage condensation),UBERON:0005891 (coelomic epithelium),UBERON:0006258 (lateral plate mesenchyme),UBERON:0006267 (notochordal plate),UBERON:0006293 (spleen primordium),UBERON:0007005 (cardiac mesoderm),UBERON:0007383 (enveloping layer of ectoderm),UBERON:0007690 (early pharyngeal endoderm),UBERON:0008835 (hepatic diverticulum),UBERON:0009526 (maxillary process mesenchyme),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0009846 (embryonic cloacal epithelium),UBERON:0009881 (anterior lateral plate mesoderm),UBERON:0010046 (entire pharyngeal arch associated mesenchyme),UBERON:0010286 (midbrain neural tube),UBERON:0010316 (germ layer / neural crest),UBERON:0010359 (pharyngeal arch mesenchyme from neural crest) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11947-126B3 (Mesoderm, embryo E8.5)
Mouse (Mus musculus)
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
- 11947-126B3 (Mesoderm, embryo E8.5)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005291 (embryonic tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.5e-31 | FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_5b066d59181ecc997ac6454fbc91a3ad | p1@CST3 |
| 7.5e-31 | FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_5b066d59181ecc997ac6454fbc91a3ad | p1@CST3 |
| 6.91e-29 | FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_c5984a643f17a63136320b662a5be1a8 | p1@KCTD12 |
| 6.91e-29 | FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_c5984a643f17a63136320b662a5be1a8 | p1@KCTD12 |
| 1.31e-28 | FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_f0580261f3fa1fdf5d980d20b44d80c1 | p1@TSC22D1 |
| 1.31e-28 | FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_f0580261f3fa1fdf5d980d20b44d80c1 | p1@TSC22D1 |
| 6.82e-28 | FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_7da0c6d4bf4cc6298a6c2fce9cc5386a | p1@PID1 |
| 6.82e-28 | FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_7da0c6d4bf4cc6298a6c2fce9cc5386a | p1@PID1 |
| 1.74e-26 | FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_b03d0b59cd08a0dd99a7cabb0f5151e7 | p1@DOCK4 |
| 1.74e-26 | FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_b03d0b59cd08a0dd99a7cabb0f5151e7 | p1@DOCK4 |
| 4.12e-26 | FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_ea1ba289ae1f3c88f486791fb7b4616e | p1@TOLLIP |
| 4.12e-26 | FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_ea1ba289ae1f3c88f486791fb7b4616e | p1@TOLLIP |
| 6.68e-25 | FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_7d3958ac7fa6d7acec96a725b7b60aaf | p1@ALDH2 |
| 6.68e-25 | FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_7d3958ac7fa6d7acec96a725b7b60aaf | p1@ALDH2 |
| 6.83e-25 | FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_e5fe84ecd06ffe9de807f49e9bfa666f | p3@KCTD12 |
| 6.83e-25 | FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_e5fe84ecd06ffe9de807f49e9bfa666f | p3@KCTD12 |
| 1.27e-24 | FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_d0f2f87493354591db5de5322da87811 | p1@WDFY3 |
| 1.27e-24 | FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_d0f2f87493354591db5de5322da87811 | p1@WDFY3 |
| 6.07e-24 | FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_cd8544d09bdb2bc46e6db17fc30345d1 | p1@ROGDI |
| 6.07e-24 | FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_cd8544d09bdb2bc46e6db17fc30345d1 | p1@ROGDI |
| 1.62e-23 | FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_114368a575c9363c9e5a5e9844aca3ee | p1@RGL1 |
| 1.62e-23 | FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_114368a575c9363c9e5a5e9844aca3ee | p1@RGL1 |
| 2.33e-23 | FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_c9dbc4c9c781aeefe38eea3d9e37d31b | p1@PPP2CB |
| 2.33e-23 | FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_c9dbc4c9c781aeefe38eea3d9e37d31b | p1@PPP2CB |
| 2.57e-23 | FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_0afbf4d7e5b6472c62142a8981bad733 | p2@KCTD12 |
| 2.57e-23 | FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_0afbf4d7e5b6472c62142a8981bad733 | p2@KCTD12 |
| 4.06e-23 | FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_08c37248ee0d7ed3fbc3016ab3187617 | p2@FAM198B |
| 4.06e-23 | FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_08c37248ee0d7ed3fbc3016ab3187617 | p2@FAM198B |
| 6.15e-23 | FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_8b0ac267ae99819e0228c94d15e2a3ad | p1@C15orf38 |
| 6.15e-23 | FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_8b0ac267ae99819e0228c94d15e2a3ad | p1@C15orf38 |
| 7.82e-23 | FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_1bc3bb9dced17b46b1d96b4717764f9e | p1@PLD3 |
| 7.82e-23 | FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_1bc3bb9dced17b46b1d96b4717764f9e | p1@PLD3 |
| 1.53e-22 | FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_841d3c6daebb83691b6372151ce2d3bb | p2@ATP6V0C |
| 1.53e-22 | FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_841d3c6daebb83691b6372151ce2d3bb | p2@ATP6V0C |
| 2.37e-22 | FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_eb60c8753e0ec704f41c9c1b26f2bb17 | p2@SRC |
| 2.37e-22 | FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_eb60c8753e0ec704f41c9c1b26f2bb17 | p2@SRC |
| 5.65e-22 | FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_aa1761c1ea12b9d667e092dae1364aad | p1@CDC42EP2 |
| 5.65e-22 | FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_aa1761c1ea12b9d667e092dae1364aad | p1@CDC42EP2 |
| 5.66e-22 | FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_20d5d49010ade8e69d41ba0677f2b809 | p1@PITPNA |
| 5.66e-22 | FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_20d5d49010ade8e69d41ba0677f2b809 | p1@PITPNA |
| 5.93e-22 | FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_2d709e2f4b7a96e64811804a8b6180b5 | p1@C3 |
| 5.93e-22 | FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_2d709e2f4b7a96e64811804a8b6180b5 | p1@C3 |
| 6.18e-22 | FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_cf2488cc5f14eebd5f3b4b91e51eaeea | p2@TTYH3 |
| 6.18e-22 | FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_cf2488cc5f14eebd5f3b4b91e51eaeea | p2@TTYH3 |
| 1.1e-21 | FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_4a708305b54508f61eaa788f5e3fe166 | p2@BIN1 |
| 1.1e-21 | FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_4a708305b54508f61eaa788f5e3fe166 | p2@BIN1 |
| 2.41e-21 | FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_9c18c2ee7c863f8ad21baeca376b39ad | p1@WBP2 |
| 2.41e-21 | FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_9c18c2ee7c863f8ad21baeca376b39ad | p1@WBP2 |
| 3.59e-21 | FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_9476aec0a55613877929d6b2c2c29b72 | p1@TCN2 |
| 3.59e-21 | FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_9476aec0a55613877929d6b2c2c29b72 | p1@TCN2 |
| 3.69e-21 | FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_f06cb7f5f66196042eaed01a2a4e5fdd | p1@NFIB |
| 3.69e-21 | FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_f06cb7f5f66196042eaed01a2a4e5fdd | p1@NFIB |
| 4.02e-21 | FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_3b5134c3b0dbb432e98180c3a8685c30 | p2@NFIB |
| 4.02e-21 | FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_3b5134c3b0dbb432e98180c3a8685c30 | p2@NFIB |
| 4.54e-21 | FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_2ce4ae9c83a055e9ab3374c6f4f67425 | p1@IRGQ |
| 4.54e-21 | FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_2ce4ae9c83a055e9ab3374c6f4f67425 | p1@IRGQ |
| 5.7e-21 | FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_384b17ca380bddadb501c1a0bb4578ea | p1@CCDC149 |
| 5.7e-21 | FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_384b17ca380bddadb501c1a0bb4578ea | p1@CCDC149 |
| 6.27e-21 | FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_f476d2b846bb350aaef5607e87b48d54 | p1@BIN1 |
| 6.27e-21 | FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_f476d2b846bb350aaef5607e87b48d54 | p1@BIN1 |
| 1.02e-20 | FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_908b1a5091a703b4a0c7637f3a97b95b | p1@PRKACA |
| 1.02e-20 | FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_908b1a5091a703b4a0c7637f3a97b95b | p1@PRKACA |
| 1.29e-20 | FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_a09153c7ec6601a6365c409c4b471ef4 | p1@C16orf7 |
| 1.29e-20 | FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_a09153c7ec6601a6365c409c4b471ef4 | p1@C16orf7 |
| 1.45e-20 | FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_43ee00add889c86ba980761ed754d6b5 | p1@KIF1B |
| 1.45e-20 | FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_43ee00add889c86ba980761ed754d6b5 | p1@KIF1B |
| 2.63e-20 | FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_18bd163a0ab2a45062b5d7a077f3790f | p@chr18:59561635..59561651, - |
| 2.63e-20 | FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_18bd163a0ab2a45062b5d7a077f3790f | p@chr18:59561635..59561651, - |
| 3.08e-20 | FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_18d126fc8c1704ee460b43166fd69144 | p1@ACVR1B |
| 3.08e-20 | FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_18d126fc8c1704ee460b43166fd69144 | p1@ACVR1B |
| 3.96e-20 | FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_5031c7ca39c78217261223280d6efeb2 | p@chr20:23614485..23614564, - |
| 3.96e-20 | FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_5031c7ca39c78217261223280d6efeb2 | p@chr20:23614485..23614564, - |
| 5.35e-20 | FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_1903d1ce2de7463197699db572959f3f | p1@WLS |
| 5.35e-20 | FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_1903d1ce2de7463197699db572959f3f | p1@WLS |
| 6.51e-20 | FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_6e0e91a8694f860af001e4d57f52c9e8 | p3@SVIL |
| 6.51e-20 | FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_6e0e91a8694f860af001e4d57f52c9e8 | p3@SVIL |
| 6.99e-20 | FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_5830a6a66da8d82fa7bb9c684b8636c7 | p1@OAZ2 |
| 6.99e-20 | FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_5830a6a66da8d82fa7bb9c684b8636c7 | p1@OAZ2 |
| 8.06e-20 | FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_d6fb6cc1dd019871dc43d964f4959ff0 | p1@DNAJB5 |
| 8.06e-20 | FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_d6fb6cc1dd019871dc43d964f4959ff0 | p1@DNAJB5 |
| 9.9e-20 | FFCP PHASE2:Hg19::chrX:100333858..100333876,+#_e7d7beb64be2668ecc3a2711295f57fe | p1@TMEM35 |
| 9.9e-20 | FFCP PHASE1:Hg19::chrX:100333858..100333876,+#_e7d7beb64be2668ecc3a2711295f57fe | p1@TMEM35 |
| 1.09e-19 | FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_8a621f3f882e26878e6ff89f7be600b0 | p1@ATP6V0C |
| 1.09e-19 | FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_8a621f3f882e26878e6ff89f7be600b0 | p1@ATP6V0C |
| 1.11e-19 | FFCP PHASE1:Hg19::chr17:68165657..68165688,+#_f1660727e4d7c7d25ae87351dfb8aece | p1@KCNJ2 |
| 1.11e-19 | FFCP PHASE2:Hg19::chr17:68165657..68165688,+#_f1660727e4d7c7d25ae87351dfb8aece | p1@KCNJ2 |
| 1.12e-19 | FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_cdd6818d49840fb66a1543895e933e04 | p2@SOX15 |
| 1.12e-19 | FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_cdd6818d49840fb66a1543895e933e04 | p2@SOX15 |
| 1.16e-19 | FFCP PHASE2:Hg19::chr19:11466086..11466159,+#_ed86fcdf2b625086e5177729c8dff41e | p1@LPPR2 |
| 1.16e-19 | FFCP PHASE1:Hg19::chr19:11466086..11466159,+#_ed86fcdf2b625086e5177729c8dff41e | p1@LPPR2 |
| 1.32e-19 | FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_14d5cac66e1f2ea5a3af78569ec08358 | p@chr18:59561658..59561685, - |
| 1.32e-19 | FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_14d5cac66e1f2ea5a3af78569ec08358 | p@chr18:59561658..59561685, - |
| 1.38e-19 | FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_dcf2a0ec054e98ca7b0aa5e00160691c | p1@ATP2A2 |
| 1.38e-19 | FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_dcf2a0ec054e98ca7b0aa5e00160691c | p1@ATP2A2 |
| 1.45e-19 | FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_0c7b43206de49d80eb27f4e6c79fc3ec | p1@SMPDL3A |
| 1.45e-19 | FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_0c7b43206de49d80eb27f4e6c79fc3ec | p1@SMPDL3A |
| 1.86e-19 | FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_22d7fb808772d0fc482b2c7c9970606a | p2@KIAA1598 |
| 1.86e-19 | FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_22d7fb808772d0fc482b2c7c9970606a | p2@KIAA1598 |
| 3.3e-19 | FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_ba785d316e64bfd446e7213bbebd01fa | p1@FMNL2 |
| 3.3e-19 | FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_ba785d316e64bfd446e7213bbebd01fa | p1@FMNL2 |
