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(Replaced content with " Data sources used in FANTOM5 SSTAR === CAGE peaks === * CAGE peak location (with the robust threshold) , annotation, and expression ** [https://fantom.gsc.riken.jp/5/da...")
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{{f5samplesTest
 
|DRA_sample_Accession=CAGE@SAMD00005875
Data sources used in FANTOM5 SSTAR
|accession_numbers=CAGE;DRX009119;DRR009993;DRZ001418;DRZ002801;DRZ012768;DRZ014151
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002370,UBERON:0000479,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113
 
|ancestors_in_cell_lineage_facet=
=== CAGE peaks ===
|ancestors_in_disease_facet=
* CAGE peak location (with the robust threshold) , annotation, and expression
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000311,FF:0011304
** [https://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/CAGE_peaks/hg19.cage_peak_phase1and2combined_tpm_ann.osc.txt.gz Human]
|comment=
** [https://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/CAGE_peaks/mm9.cage_peak_phase1and2combined_tpm_ann.osc.txt.gz Mouse]
|created_by=
* Ontology-based sample term enrichment analysis
|creation_date=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_CAGE_peaks/ Human]
|data_phase=2
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_CAGE_peaks/ Mouse]
|datafreeze_phase=2
 
|def=
=== Genes ===
|expression_enrichment_score=chr11:52096066..52096081,-!p2@Tcf7!2.67!559.15!Tcf7;;chr17:51971960..51971979,-!p1@Satb1!2.32!276.92!Satb1;;chr17:51971932..51971958,-!p2@Satb1!2.09!164.82!Satb1;;chr11:52095821..52095836,-!p3@Tcf7!2.06!114.31!Tcf7;;chr3:94181376..94181403,+!p2@Rorc!1.96!90.53!Rorc;;chr1:38721792..38721845,-!p1@Aff3!1.91!100.13!Aff3;;chr11:52096804..52096896,-!p1@Tcf7!1.86!542.91!Tcf7;;chr12:109242266..109242295,-!p1@Bcl11b!1.83!525.48!Bcl11b;;chr3:130815703..130815721,+!p2@Lef1!1.80!74.73!Lef1;;chr16:92826249..92826325,-!p1@Runx1!1.67!109.88!Runx1;;chr2:147190749..147190769,+!p1@Pax1!1.64!42.53!Pax1;;chr11:52095797..52095809,-!p5@Tcf7!1.58!37.37!Tcf7;;chr11:11590117..11590138,+!p4@Ikzf1!1.53!33.08!Ikzf1;;chr3:94181427..94181449,+!p3@Rorc!1.51!31.16!Rorc;;chr11:11584970..11585030,+!p2@Ikzf1!1.50!43.27!Ikzf1;;chr11:11590140..11590187,+!p3@Ikzf1!1.50!36.63!Ikzf1;;chr3:130813200..130813252,+!p1@Lef1!1.46!119.19!Lef1;;chr2:9800207..9800234,-!p1@Gata3!1.43!76.65!Gata3;;chr10:20880629..20880683,-!p1@Myb!1.43!72.66!Myb;;chr11:98407264..98407295,-!p1@Ikzf3!1.43!25.85!Ikzf3;;chr4:135728311..135728342,+!p3@E2f2!1.41!24.96!E2f2;;chr10:20880731..20880775,-!p2@Myb!1.39!48.59!Myb;;chr12:109241728..109241781,-!p2@Bcl11b!1.38!24.66!Bcl11b;;chr17:51971991..51972003,-!p4@Satb1!1.38!22.89!Satb1;;chr17:51965903..51965926,-!p5@Satb1!1.38!22.89!Satb1;;chr10:20880698..20880717,-!p3@Myb!1.34!32.79!Myb;;chr17:51972530..51972571,-!p7@Satb1!1.32!20.09!Satb1;;chr3:94181331..94181345,+!p4@Rorc!1.32!19.79!Rorc;;chr14:79915425..79915501,+!p1@Elf1!1.31!166.45!Elf1;;chr4:102787521..102787588,+!p4@Mier1!1.29!33.23!Mier1;;chr11:98407234..98407259,-!p2@Ikzf3!1.29!18.61!Ikzf3;;chr11:11585912..11585950,+!p6@Ikzf1!1.27!22.45!Ikzf1;;chr3:94181355..94181373,+!p5@Rorc!1.25!16.84!Rorc;;chr2:147190725..147190747,+!p2@Pax1!1.24!16.54!Pax1;;chr11:11586218..11586285,+!p1@Ikzf1!1.22!49.18!Ikzf1;;chr4:6917606..6917681,-!p1@Tox!1.21!62.77!Tox;;chr11:11585678..11585745,+!p5@Ikzf1!1.21!22.01!Ikzf1;;chr17:51972438..51972463,-!p8@Satb1!1.21!15.36!Satb1;;chr12:109241852..109241873,-!p4@Bcl11b!1.20!17.72!Bcl11b;;chr4:135728282..135728310,+!p4@E2f2!1.20!16.69!E2f2;;chr16:25801993..25802014,+!p1@Trp63!1.19!14.33!Trp63;;chr1:52065454..52065495,+!p1@Stat4!1.17!22.74!Stat4;;chr11:98826178..98826197,+!p7@Rara!1.17!13.74!Rara;;chr11:52096750..52096772,-!p4@Tcf7!1.16!20.68!Tcf7;;chr8:108583550..108583595,+!p2@Nfatc3!1.14!57.45!Nfatc3;;chr17:48025139..48025166,-!p8@Foxp4!1.13!14.77!Foxp4;;chr4:63064364..63064384,-!p1@Akna!1.12!35.45!Akna;;chr17:51972603..51972624,-!p9@Satb1!1.12!12.26!Satb1;;chr7:51787434..51787448,-!p1@Spib!1.11!16.98!Spib;;chr3:94181461..94181472,+!p6@Rorc!1.10!11.67!Rorc;;chr11:98407142..98407159,-!p5@Ikzf3!1.10!11.52!Ikzf3;;chr9:32503590..32503680,+!p1@Ets1!1.09!406.74!Ets1;;chr8:124984566..124984595,-!p1@Snai3!1.09!17.58!Snai3;;chr5:108155007..108155034,-!p1@Gfi1!1.09!11.22!Gfi1;;chr17:51965928..51965960,-!p10@Satb1!1.08!10.93!Satb1;;chr17:51952856..51952876,-!p12@Satb1!1.06!10.49!Satb1;;chr12:57796615..57796687,+!p1@Pax9!1.05!10.34!Pax9;;chr2:173044380..173044432,-!p1@Zbp1!1.04!23.78!Zbp1;;chr11:98407340..98407359,-!p4@Ikzf3!1.04!9.90!Ikzf3;;chr11:52096732..52096741,-!p6@Tcf7!1.04!9.90!Tcf7;;chr17:51972400..51972428,-!p11@Satb1!1.03!9.60!Satb1;;chr5:138186979..138187025,+!p4@Tsc22d4!1.01!34.41!Tsc22d4;;chr11:100800901..100800921,-!p4@Stat3!1.00!10.63!Stat3;;chr3:94181408..94181419,+!p7@Rorc!0.99!8.71!Rorc;;chr5:104182963..104182982,+!p5@Aff1!0.98!18.46!Aff1;;chr19:25746898..25746910,+!p1@Dmrt2!0.98!12.70!Dmrt2;;chr4:135728181..135728203,+!p2@E2f2!0.98!11.52!E2f2;;chr17:51951634..51951651,-!p6@Satb1!0.97!16.39!Satb1;;chr3:130813254..130813263,+!p4@Lef1!0.96!8.12!Lef1;;chr11:98407370..98407395,-!p3@Ikzf3!0.95!7.83!Ikzf3;;chr11:98338697..98338709,-!p9@Ikzf3!0.94!7.68!Ikzf3;;chr17:45692642..45692663,+!p1@Nfkbie!0.92!24.22!Nfkbie;;chr5:108494765..108494786,+!p2@Mtf2!0.92!9.90!Mtf2;;chr17:51972575..51972595,-!p13@Satb1!0.92!7.24!Satb1;;chr16:23988711..23988727,-!p1@Bcl6!0.89!83.74!Bcl6;;chr1:69732354..69732402,-!p1@Ikzf2!0.89!7.68!Ikzf2;;chr11:11590085..11590106,+!p7@Ikzf1!0.89!6.79!Ikzf1;;chr11:52074095..52074127,-!p8@Tcf7!0.88!6.65!Tcf7;;chr3:130815472..130815497,+!p6@Lef1!0.87!6.50!Lef1;;chr17:51965860..51965876,-!p14@Satb1!0.87!6.35!Satb1;;chr10:88145766..88145770,-!p1@Spic!0.86!8.42!Spic;;chr11:52070502..52070527,-!p7@Tcf7!0.86!6.20!Tcf7;;chr11:98407121..98407133,-!p10@Ikzf3!0.86!6.20!Ikzf3;;chr12:74147689..74147711,-!p1@Six1!0.84!13.44!Six1;;chr17:45692676..45692695,+!p2@Nfkbie!0.84!12.55!Nfkbie;;chr4:134708451..134708469,+!p1@Runx3!0.84!10.93!Runx3;;chr3:130813736..130813752,+!p3@Lef1!0.84!8.57!Lef1;;chr11:11590188..11590200,+!p8@Ikzf1!0.84!5.91!Ikzf1;;chr9:71959562..71959624,-!p3@Tcf12!0.83!21.27!Tcf12;;chr6:99216488..99216534,-!p2@Foxp1!0.82!16.69!Foxp1;;chr5:108155037..108155060,-!p2@Gfi1!0.81!5.46!Gfi1;;chr4:134676555..134676575,+!p2@Runx3!0.81!5.46!Runx3;;chr11:106134241..106134320,-!p2@Smarcd2!0.80!66.02!Smarcd2;;chr1:133904862..133904893,+!p6@Elk4!0.80!11.37!Elk4;;chr5:104183477..104183548,+!p6@Aff1!0.80!10.93!Aff1;;chr9:71958979..71959032,-!p4@Tcf12!0.80!6.94!Tcf12;;chr13:30841099..30841116,+!p1@Irf4!0.78!8.12!Irf4;;chr16:92697560..92697592,-!p2@Runx1!0.77!33.38!Runx1;;chr11:52070478..52070500,-!p10@Tcf7!0.77!4.87!Tcf7;;chr7:148514080..148514108,-!p4@Deaf1!0.76!10.93!Deaf1;;chr12:3891753..3891801,+!p4@Dnmt3a!0.76!8.12!Dnmt3a;;chr12:3891810..3891829,+!p2@Dnmt3a!0.76!7.68!Dnmt3a;;chr1:52176315..52176343,+!p1@Stat1!0.75!73.84!Stat1;;chrX:48558950..48559016,-!p1@Mbnl3!0.75!16.10!Mbnl3;;chr10:86956396..86956411,-!p1@Ascl1!0.75!7.53!Ascl1;;chr11:98407087..98407102,-!p11@Ikzf3!0.75!4.58!Ikzf3;;chr5:138187341..138187406,+!p3@Tsc22d4!0.73!51.69!Tsc22d4;;chr7:134169762..134169795,-!p3@Maz!0.73!44.01!Maz;;chr15:61816932..61816952,+!p2@Myc!0.73!40.17!Myc;;chr10:13685980..13686007,+!p6@Hivep2!0.73!5.61!Hivep2;;chr4:102787381..102787397,+!p9@Mier1!0.73!5.17!Mier1;;chr10:20881160..20881175,-!p4@Myb!0.73!4.43!Myb;;chr10:77506405..77506441,-!p1@Aire!0.73!4.43!Aire;;chr12:109241804..109241823,-!p5@Bcl11b!0.73!4.43!Bcl11b;;chr10:13686012..13686028,+!p8@Hivep2!0.73!4.43!Hivep2;;chr1:64579555..64579570,+!p3@Creb1!0.72!22.60!Creb1;;chr11:11590205..11590216,+!p9@Ikzf1!0.72!4.28!Ikzf1;;chr16:95924005..95924042,+!p2@Ets2!0.71!84.48!Ets2;;chr7:134169810..134169824,-!p7@Maz!0.71!17.28!Maz;;chr6:115803317..115803361,-!p2@Mbd4!0.71!11.22!Mbd4;;chr11:100721761..100721851,+!p1@Stat5a!0.70!33.08!Stat5a;;chr11:100683839..100683890,-!p2@Stat5b!0.70!10.19!Stat5b;;chr2:91077034..91077078,-!p2@Ddb2!0.70!9.60!Ddb2;;chr11:98407305..98407321,-!p6@Ikzf3!0.70!3.99!Ikzf3;;chr11:98407164..98407177,-!p8@Ikzf3!0.70!3.99!Ikzf3;;chr10:67000609..67000625,+!p1@Egr2!0.69!9.90!Egr2;;chr12:109242296..109242307,-!p3@Bcl11b!0.69!6.06!Bcl11b;;chr1:87546583..87546595,+!p1@Sp100!0.69!5.76!Sp100;;chr1:52065508..52065522,+!p2@Stat4!0.69!4.73!Stat4;;chr9:32348943..32349001,-!p1@Fli1!0.68!35.74!Fli1;;chr13:55431084..55431137,-!p1@Mxd3!0.68!33.82!Mxd3;;chr2:91077082..91077122,-!p1@Ddb2!0.68!27.03!Ddb2;;chr11:3190303..3190351,+!p3@Patz1!0.68!8.27!Patz1;;chr2:173044357..173044377,-!p2@Zbp1!0.68!5.76!Zbp1;;chr12:77470718..77470752,-!p4@Zbtb25!0.68!5.61!Zbtb25;;chr4:135728473..135728494,+!p5@E2f2!0.68!3.84!E2f2;;chr12:109241897..109241915,-!p6@Bcl11b!0.68!3.84!Bcl11b;;chr2:147190772..147190783,+!p3@Pax1!0.67!3.69!Pax1;;chr4:135728343..135728357,+!p9@E2f2!0.67!3.69!E2f2;;chr16:95924055..95924077,+!p1@Ets2!0.66!227.59!Ets2;;chr9:57684520..57684612,-!p1@Arid3b!0.66!36.18!Arid3b;;chr8:108160490..108160512,+!p2@Ctcf!0.66!34.12!Ctcf;;chr14:65568469..65568511,-!p2@Hmbox1!0.66!13.14!Hmbox1;;chr15:100430393..100430410,-!p3@Pou6f1!0.66!3.54!Pou6f1;;chr8:72676653..72676668,+!p4@2310045N01Rik,p4@Mef2b!0.66!3.54!Mef2b;;chr11:98407210..98407221,-!p7@Ikzf3!0.66!3.54!Ikzf3;;chr1:38721779..38721790,-!p6@Aff3!0.66!3.54!Aff3;;chr7:56136362..56136400,-!p1@E2f8!0.64!25.70!E2f8;;chr19:46380235..46380277,+!p3@Nfkb2!0.64!8.12!Nfkb2;;chr7:71083729..71083742,-!p4@Klf13!0.64!6.50!Klf13;;chr5:138187411..138187422,+!p8@Tsc22d4!0.64!5.61!Tsc22d4;;chrX:48559029..48559051,-!p7@Mbnl3!0.64!4.58!Mbnl3;;chr9:72122748..72122757,+!p4@Zfp280d!0.64!4.14!Zfp280d;;chr8:125921689..125921725,+!p3@Tcf25!0.64!3.40!Tcf25;;chrX:7156792..7156811,+!p1@Foxp3!0.64!3.40!Foxp3;;chr11:78200071..78200100,-!p1@Foxn1!0.64!3.40!Foxn1;;chr3:130815382..130815401,+!p14@Lef1!0.64!3.40!Lef1;;chr18:80904854..80904919,-!p2@Nfatc1!0.63!45.78!Nfatc1;;chr3:95021663..95021687,-!p3@Gabpb2!0.63!12.70!Gabpb2;;chr1:133904901..133904934,+!p3@Elk4!0.63!10.78!Elk4;;chr4:102792039..102792052,+!p7@Mier1!0.63!4.87!Mier1;;chr1:87495371..87495397,-!p1@Sp110!0.63!3.25!Sp110;;chr17:86087592..86087615,-!p1@Six2!0.63!3.25!Six2;;chr11:52070563..52070589,-!p9@Tcf7!0.63!3.25!Tcf7;;chr11:100711801..100711910,-!p1@Stat5b!0.62!51.84!Stat5b;;chrX:48559055..48559077,-!p6@Mbnl3!0.62!4.28!Mbnl3;;chr8:72520015..72520053,-!p2@Gatad2a!0.61!24.66!Gatad2a;;chr18:74375772..74375799,+!p2@Cxxc1!0.61!10.34!Cxxc1;;chr5:138187583..138187602,+!p6@Tsc22d4!0.61!6.20!Tsc22d4;;chr11:3191741..3191769,+!p5@Patz1!0.61!4.14!Patz1;;chr5:138187466..138187477,+!p11@Tsc22d4!0.61!3.99!Tsc22d4;;chr1:38721767..38721778,-!p5@Aff3!0.61!3.10!Aff3;;chr4:102792009..102792021,+!p6@Mier1!0.60!5.61!Mier1;;chr1:133904946..133904974,+!p7@Elk4!0.60!4.87!Elk4;;chr10:77506352..77506356,-!p2@Aire!0.60!2.95!Aire;;chr11:98826216..98826227,+!p10@Rara!0.60!2.95!Rara;;chr7:87171047..87171078,+!p1@Zfp710!0.59!11.22!Zfp710;;chrX:48559079..48559108,-!p2@Mbnl3!0.59!7.53!Mbnl3;;chr7:31206743..31206761,+!p1@Nfkbid!0.59!4.28!Nfkbid;;chr12:100802113..100802127,-!p5@Foxn3!0.59!3.99!Foxn3;;chr6:47544966..47545046,-!p1@Ezh2!0.58!71.63!Ezh2;;chr11:62272010..62272050,-!p2@Ncor1!0.58!10.63!Ncor1;;chr8:74405624..74405679,+!p3@Zfp709!0.58!5.46!Zfp709;;chr17:27693622..27693635,+!p11@Hmga1-rs1,p12@Hmga1!0.58!3.69!Hmga1;;chr4:135736690..135736705,+!p6@E2f2!0.58!3.40!E2f2;;chr3:130813268..130813275,+!p12@Lef1!0.58!2.81!Lef1;;chrX:98449898..98449913,+!p2@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r18:24145736..24145783,-!p1@Zscan30!0.19!6.20!Zscan30;;chr5:104121453..104121479,+!p4@Aff1!0.19!5.61!Aff1;;chr17:84105477..84105509,+!p3@Mta3!0.19!4.73!Mta3;;chr14:65977459..65977489,+!p3@Zfp395!0.19!4.14!Zfp395;;chr1:13362515..13362538,-!p2@Ncoa2!0.19!3.99!Ncoa2;;chr4:108131994..108132056,+!p2@Zcchc11!0.19!3.84!Zcchc11;;chr13:37870307..37870337,+!p5@Rreb1!0.19!2.36!Rreb1;;chr4:133310214..133310231,-!p11@Arid1a!0.19!1.48!Arid1a;;chr13:67476665..67476693,-!p2@Zfp456!0.19!1.33!Zfp456;;chr8:47825203..47825225,+!p3@Irf2!0.19!1.03!Irf2;;chr9:19426719..19426729,+!p4@Zfp317!0.19!1.03!Zfp317;;chr2:126501847..126501876,-!p5@Gabpb1!0.19!0.74!Gabpb1;;chr8:47825107..47825145,+!p1@Irf2!0.18!54.65!Irf2;;chr4:34830168..34830213,-!p1@Zfp292!0.18!51.69!Zfp292;;chr1:182499044..182499091,+!p1@Parp1!0.18!45.05!Parp1;;chr15:81702313..81702346,-!p1@Phf5a!0.18!41.50!Phf5a;;chr11:102180255..102180318,-!p1@Ubtf!0.18!30.72!Ubtf;;chr15:38230448..38230470,-!p1@Klf10!0.18!28.50!Klf10;;chr16:84835605..84835666,+!p1@Gabpa!0.18!21.71!Gabpa;;chr13:67654035..67654112,-!p1@Zfp748!0.18!19.64!Zfp748;;chr7:24866907..24866967,+!p1@LOC676710,p1@Zfp180!0.18!17.13!Zfp180;;chr1:179372411..179372509,+!p1@Zfp238!0.18!16.84!Zfp238;;chrX:20639107..20639188,-!p1@Zfp182!0.18!16.84!Zfp182;;chr10:127707602..127707633,+!p1@Stat2!0.18!11.37!Stat2;;chr14:56223010..56223067,+!p1@Irf9!0.18!10.19!Irf9;;chr17:84105510..84105540,+!p2@Mta3!0.18!6.50!Mta3;;chr17:48061692..48061723,-!p5@Foxp4!0.18!5.76!Foxp4;;chr4:131817441..131817487,-!p1@Gmeb1!0.18!5.46!Gmeb1;;chr7:135020438..135020468,+!p1@Zfp646!0.18!5.17!Zfp646;;chr2:37278526..37278575,-!p2@Rc3h2!0.18!5.02!Rc3h2;;chr17:27693546..27693557,+!p6@Hmga1!0.18!4.14!Hmga1;;chr14:52634234..52634281,-!p3@Zfp219!0.18!2.95!Zfp219;;chr8:124900562..124900573,+!p3@Zc3h18!0.18!2.81!Zc3h18;;chr8:74405860..74405905,+!p2@Zfp709!0.18!2.22!Zfp709;;chr18:76401789..76401814,+!p4@Smad2!0.18!2.22!Smad2;;chr7:49761111..49761128,-!p2@ENSMUST00000174407,p2@uc009gmb.1!0.18!2.07!Zfp141;;chr4:118954858..118954885,-!p5@Ybx1!0.18!1.62!Ybx1;;chr2:168032516..168032525,-!p5@Adnp!0.18!1.33!Adnp;;chr11:99092312..99092333,-!p4@Smarce1!0.18!1.18!Smarce1;;chr3:87329568..87329589,+!p2@Etv3!0.18!1.03!Etv3;;chr7:13421299..13421303,+!p3@Zfp110!0.18!1.03!Zfp110;;chrX:48559194..48559210,-!p4@Mbnl3!0.18!0.89!Mbnl3;;chr11:62270791..62270834,-!p1@Ncor1!0.17!66.76!Ncor1;;chr5:34530319..34530398,-!p1@Mxd4!0.17!65.43!Mxd4;;chr8:26951227..26951266,-!p1@Ash2l!0.17!53.02!Ash2l;;chr9:44689360..44689406,-!p1@Mll1!0.17!49.62!Mll1;;chr19:4397052..4397098,-!p1@Kdm2a!0.17!34.56!Kdm2a;;chr10:22451112..22451136,-!p1@Tbpl1!0.17!32.05!Tbpl1;;chr7:13595144..13595205,-!p1@Zbtb45!0.17!25.40!Zbtb45;;chr17:33766023..33766059,+!p1@Zfp414!0.17!19.94!Zfp414;;chr9:96096707..96096772,+!p1@Tfdp2!0.17!19.64!Tfdp2;;chr1:64579364..64579389,+!p2@Creb1!0.17!11.37!Creb1;;chr7:50834947..50835010,+!p2@Zfp719!0.17!6.35!Zfp719;;chr13:67274092..67274140,+!p1@Rsl1!0.17!3.99!Rsl1;;chr11:87881803..87881817,+!p3@Vezf1!0.17!3.54!Vezf1;;chr5:22940320..22940331,+!p2@Mll5!0.17!3.25!Mll5;;chr7:134519542..134519569,-!p1@Zfp747!0.17!3.25!Zfp747;;chr7:135020324..135020368,-!p4@Zfp668!0.17!3.10!Zfp668;;chr17:48061631..48061648,-!p7@Foxp4!0.17!2.81!Foxp4;;chr11:87881818..87881834,+!p4@Vezf1!0.17!2.51!Vezf1;;chr19:26679596..26679607,+!p8@Smarca2!0.17!1.92!Smarca2;;chr5:65194709..65194716,+!p10@Klf3!0.17!1.77!Klf3;;chr11:60036258..60036276,-!p3@Srebf1!0.17!1.48!Srebf1;;chr4:119212321..119212332,+!p2@Foxj3!0.17!1.33!Foxj3;;chr7:56136974..56136989,-!p4@E2f8!0.17!1.33!E2f8;;chr12:3806513..3806527,+!p9@Dnmt3a!0.17!1.18!Dnmt3a;;chr2:126501184..126501196,-!p6@Gabpb1!0.17!1.03!Gabpb1;;chr2:154395552..154395561,-!p3@E2f1!0.17!1.03!E2f1;;chr7:135020660..135020688,+!p3@Zfp646!0.17!1.03!Zfp646;;chr7:134169648..134169657,-!p14@Maz!0.17!1.03!Maz;;chr7:30094448..30094481,+!p4@Dpf1!0.17!0.74!Dpf1;;chr19:5637736..5637766,+!p1@Rela!0.16!34.71!Rela;;chr13:59924433..59924504,-!p1@Zcchc6!0.16!28.36!Zcchc6;;chr2:73730645..73730673,-!p2@Atf2,p2@LOC100047997!0.16!26.29!Atf2;;chr9:30837968..30838036,+!p1@Zbtb44!0.16!22.01!Zbtb44;;chr11:80196801..80196806,+!p2@Zfp207!0.16!18.61!Zfp207;;chr9:22112085..22112138,-!p1@Zfp810!0.16!15.66!Zfp810;;chr13:44826694..44826710,+!p3@Jarid2!0.16!13.74!Jarid2;;chr2:181100089..181100119,+!p1@Zgpat!0.16!11.52!Zgpat;;chr9:113840108..113840184,+!p2@Ubp1!0.16!11.37!Ubp1;;chr2:72817320..72817399,-!p2@Sp3!0.16!10.63!Sp3;;chr9:96159665..96159680,+!p3@Tfdp2!0.16!5.17!Tfdp2;;chr3:94641302..94641341,+!p3@Pogz!0.16!4.43!Pogz;;chr7:6124135..6124158,+!p2@Zfp444!0.16!4.28!Zfp444;;chr7:88138585..88138600,+!p2@Zfp592!0.16!2.95!Zfp592;;chr3:135354452..135354475,-!p5@Nfkb1!0.16!2.51!Nfkb1;;chr4:108151497..108151514,+!p3@Zcchc11!0.16!1.77!Zcchc11;;chr18:39648811..39648818,-!p4@Nr3c1!0.16!1.48!Nr3c1;;chr17:15636925..15636940,+!p2@Tbp!0.16!1.18!Tbp;;chr8:72356384..72356434,+!p2@Pbx4!0.16!1.18!Pbx4;;chr1:135551736..135551746,-!p3@Zc3h11a!0.16!1.18!Zc3h11a;;chr14:67853425..67853454,+!p1@Ebf2!0.16!1.03!Ebf2;;chr12:72149359..72149406,+!p4@Arid4a!0.16!0.89!Arid4a;;chr6:16848347..16848391,-!p1@Tfec!0.16!0.89!Tfec;;chr9:20385789..20385803,+!p5@Zfp846!0.16!0.74!Zfp846;;chr2:17977331..17977360,+!p11@Mllt10!0.16!0.59!Mllt10;;chr1:169528520..169528542,+!p2@Rxrg!0.16!0.44!Rxrg;;chr2:115884524..115884535,-!p27@Meis2!0.16!0.44!Meis2;;chr1:194979383..194979393,+!p3@Irf6!0.16!0.44!Irf6;;chr8:74842792..74842814,+!p2@Klf2!0.16!0.44!Klf2;;chr3:130813833..130813848,+!p16@Lef1!0.16!0.44!Lef1;;chr4:102792066..102792069,+!p14@Mier1!0.16!0.44!Mier1;;chr4:102789824..102789856,+!p19@Mier1!0.16!0.44!Mier1;;chr4:63064279..63064293,-!p7@Akna!0.16!0.44!Akna;;chr12:74147860..74147888,-!p2@Six1!0.16!0.44!Six1;;chr12:77470660..77470671,-!p8@Zbtb25!0.16!0.44!Zbtb25;;chr14:76888344..76888348,+!p26@Tsc22d1!0.16!0.44!Tsc22d1;;chr12:50484072..50484092,+!p4@Foxg1!0.16!0.44!Foxg1;;chr12:50483639..50483654,+!p1@Foxg1!0.16!0.44!Foxg1;;chr14:13178241..13178254,-!p4@Fezf2!0.16!0.44!Fezf2;;chr6:99385340..99385362,-!p11@Foxp1!0.16!0.44!Foxp1;;chr6:52108291..52108323,-!p1@Hoxa1!0.16!0.44!Hoxa1;;chr7:108966820..108966835,+!p1@Phox2a!0.16!0.44!Phox2a;;chr11:11589947..11589950,+!p18@Ikzf1!0.16!0.44!Ikzf1;;chr10:30375665..30375674,-!p11@Ncoa7!0.16!0.44!Ncoa7;;chr10:66998241..66998263,+!p2@Egr2!0.16!0.44!Egr2;;chr11:100721584..100721587,+!p8@Stat5a!0.16!0.44!Stat5a;;chr11:57645506..57645523,-!p1@Hand1!0.16!0.44!Hand1;;chr11:100683794..100683805,-!p4@Stat5b!0.16!0.44!Stat5b;;chr10:106931775..106931798,-!p1@Myf6!0.16!0.44!Myf6;;chr19:46380433..46380451,+!p5@Nfkb2!0.16!0.44!Nfkb2;;chr15:96117679..96117696,+!p6@Arid2!0.16!0.44!Arid2;;chr16:25802129..25802142,+!p3@Trp63!0.16!0.44!Trp63;;chr19:46380374..46380397,+!p7@Nfkb2!0.16!0.44!Nfkb2;;chr5:147760216..147760292,+!p1@Gtf3a!0.15!57.16!Gtf3a;;chr12:114336410..114336478,+!p1@Mta1!0.15!39.88!Mta1;;chr14:57397138..57397189,-!p1@Pspc1!0.15!38.84!Pspc1;;chr6:64992569..64992656,+!p1@Smarcad1!0.15!37.37!Smarcad1;;chr10:33670996..33671069,-!p1@Zufsp!0.15!24.96!Zufsp;;chrX:91368426..91368498,-!p1@Zfx!0.15!22.60!Zfx;;chr15:76181777..76181802,+!p2@Maf1!0.15!20.23!Maf1;;chr4:32325688..32325777,+!p1@Bach2!0.15!10.49!Bach2;;chr3:94641624..94641645,+!p2@Pogz!0.15!7.98!Pogz;;chr3:52072315..52072327,+!p2@Foxo1!0.15!7.24!Foxo1;;chr4:119406389..119406411,+!p1@Hivep3!0.15!5.46!Hivep3;;chr5:134790355..134790369,-!p4@Gtf2i!0.15!5.46!Gtf2i;;chr2:164737086..164737108,-!p2@Zfp335!0.15!3.84!Zfp335;;chr10:79390075..79390115,+!p2@Arid3a!0.15!3.54!Arid3a;;chr3:87945895..87945946,+!p2@Mef2d!0.15!3.25!Mef2d;;chr7:135020412..135020433,+!p2@Zfp646!0.15!2.36!Zfp646;;chr17:71200558..71200572,-!p4@Tgif1!0.15!2.36!Tgif1;;chr12:85658041..85658051,+!p3@Zfp410!0.15!2.22!Zfp410;;chr10:26093876..26093894,-!p2@L3mbtl3!0.15!2.22!L3mbtl3;;chr5:22939771..22939797,+!p4@Mll5!0.15!1.92!Mll5;;chr18:3337612..3337644,-!p8@Crem!0.15!1.62!Crem;;chr8:72663049..72663061,-!p4@LOC100048268,p4@Rfxank!0.15!1.48!Rfxank;;chr1:167932722..167932740,-!p2@Pou2f1!0.15!1.33!Pou2f1;;chr13:29045131..29045159,-!p3@Sox4!0.15!1.03!Sox4;;chr15:103170561..103170572,-!p4@Zfp385a!0.15!1.03!Zfp385a;;chr11:69393784..69393805,+!p3@Trp53!0.15!0.89!Trp53;;chr11:102177974..102177992,-!p17@Ubtf!0.15!0.74!Ubtf;;chr9:56266504..56266516,+!p5@Hmg20a!0.15!0.59!Hmg20a;;chr7:52253119..52253130,+!p4@Irf3!0.15!0.59!Irf3;;chr4:117354821..117354830,-!p3@Dmap1!0.15!0.59!Dmap1;;chr5:77695241..77695257,+!p10@Rest!0.15!0.59!Rest;;chr13:58503837..58503885,-!p1@Hnrnpk!0.14!354.90!Hnrnpk;;chr15:81977668..81977705,+!p1@Srebf2!0.14!94.37!Srebf2;;chr6:35083688..35083730,-!p1@Cnot4!0.14!62.32!Cnot4;;chr17:15636872..15636923,+!p1@Tbp!0.14!47.26!Tbp;;chr5:139060930..139060975,-!p1@Zfp68!0.14!44.90!Zfp68;;chr7:97591284..97591375,+!p1@Crebzf!0.14!40.02!Crebzf;;chr16:91044627..91044703,-!p1@Gcfc1!0.14!39.29!Gcfc1;;chr7:30954720..30954785,-!p1@LOC677248,p1@Zfp146!0.14!31.90!Zfp146;;chr7:52253030..52253070,+!p1@Irf3!0.14!27.03!Irf3;;
* Transcription factors (curated list)
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316,FF:0000294
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Transcription_factors/TF2CLUSTER_human_official.xls Human]
|fonse_cell_line=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Transcription_factors/TF2CLUSTER_mouse_official.xls Mouse]
|fonse_cell_line_closure=
 
|fonse_cellprecursor=
* Gene details (obtained from EntrezGene)
|fonse_cellprecursor_closure=
** [ftp://ftp.ncbi.nih.gov/gene/DATA/ Human and Mouse]
|fonse_developsfrom=
 
|fonse_developsfrom_closure=UBERON:0005428
=== Coexpression module ===
|fonse_disease=
* FFCP member list
|fonse_disease_closure=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/SYNC015_combined_clustertables.txt Human]
|fonse_isa=EFO:0002091,FF:0011304
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mouse_filtered2_p75_m22_T.clusters.txt Mouse]
|fonse_isa_closure=EFO:0000001,EFO:0000683,EFO:0002091,FF:0000001,FF:0000004,FF:0000101,FF:0000102,FF:0000103,FF:0000303,FF:0000311,FF:0011304,FF:2104-43C7,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000078,UBERON:0000465,UBERON:0001062,UBERON:0002368,UBERON:0002370,UBERON:0002530,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0005057,UBERON:0005058,snap:Role,snap:SpecificallyDependentContinuant
* Sample ontology enrichment analysis
|fonse_location=FF:0011304,UBERON:0000479,UBERON:0000949,UBERON:0002390,UBERON:0002405,UBERON:0009113
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ human]
|fonse_location_closure=FF:0011304,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000078,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000949,UBERON:0001062,UBERON:0002193,UBERON:0002368,UBERON:0002370,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0005057,UBERON:0005058,UBERON:0009113
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ mouse]
|fonse_organ=
* GOStat results on Coexpression module
|fonse_organ_closure=UBERON:0002368,UBERON:0002370,UBERON:0002530,UBERON:0004177,UBERON:0005057,UBERON:0005058
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19_co-expression_GOstats.tar.gz human]
|fonse_organismsubdivision=UBERON:0009113
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9_co-expression_GOstats.tar.gz mouse]
|fonse_organismsubdivision_closure=UBERON:0009113
* Pathway enrichment analysis
|fonse_sampletype=FF:0000004
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19_co-expression_modules.tar.gz human]
|fonse_sampletype_closure=FF:0000004
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9_co-expression_modules.tar.gz mouse]
|fonse_stage=
* TFBS overrepresentation
|fonse_stage_closure=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19.novel_motif.coexpression_clusters_overrepresentation.txt.gz human_novel_motif]
|fonse_system=UBERON:0000949,UBERON:0002390,UBERON:0002405
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz human_jaspar_motif]
|fonse_system_closure=UBERON:0000949,UBERON:0002193,UBERON:0002390,UBERON:0002405
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9.novel_motif.coexpression_clusters_overrepresentation.txt.gz mouse_novel_motif]
|fonse_taxon=FF:0000103
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz  mouse_jaspar_motif]
|fonse_taxon_closure=FF:0000103
* [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/ENCODE_TF_ChIP-seq_peak_enrichment_coexprclusterencode.filtered.csv.gz ENCODE_TF_ChIP-seq_peak enrichment analysis]
|fonse_treatment=
* Relative expression of the co-expression module
|fonse_treatment_closure=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/coexpression_DPI_cluster_scores_median_human_Aug3_2012.txt.gz human]
|has_quality=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/coexpression_DPI_cluster_scores_median_mouse_Oct9_2012.txt.gz mouse]
|id=FF:2104-43C7
 
|is_a=EFO:0002091;;FF:0011304
=== Motifs ===
|is_obsolete=
* Novel motifs GREAT analysis results
|library_id=CNhs11137
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/hg19.table.txt Human]
|library_id_phase_based=2:CNhs11137
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/mm9.table.txt Mouse]
|microRNAs=
* Novel motifs Significance of the correlation with CAGE expression
|microRNAs_nn=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt Human]
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;2104
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt Mouse]
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;2104
* Jaspar motifs Significance of the correlation with CAGE expression
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/thymus%252c%2520neonate%2520N03.CNhs11137.2104-43C7.mm10.nobarcode.bam
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt Human]
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/thymus%252c%2520neonate%2520N03.CNhs11137.2104-43C7.mm10.nobarcode.ctss.bed.gz
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt Mouse]
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/thymus%252c%2520neonate%2520N03.CNhs11137.2104-43C7.mm9.nobarcode.bam
 
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/thymus%252c%2520neonate%2520N03.CNhs11137.2104-43C7.mm9.ctss.bed.gz
=== Sample ===
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/thymus%252c%2520neonate%2520N03.CNhs11137.2104-43C7.mm9.nobarcode.rdna.fa.gz
* sample name and attributes
|name=thymus, neonate N03
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/HumanSamples2.0.sdrf.xlsx Human]
|namespace=FANTOM5
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/MouseSamples2.3.sdrf.xlsx Mouse]
|part_of=
* [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Transcription_factors/ Transcription factors, relative expression]
|profile_cagescan=,,,
* [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/ HOMER motifs]
|profile_hcage=CNhs11137,LSID735,release008,COMPLETED
* Repeat family, relative expression
|profile_rnaseq=
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Repeat_expression/DPI_cluster_scores_human_median_by_repFamilies_Aug06_2012.txt.gz human]
|profile_srnaseq=,,,
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Repeat_expression/DPI_cluster_scores_mouse_median_by_repFamilies_Aug06_2012.txt.gz mouse]
|repeat_enrich_byfamily=0.051583626600133,0.0198302448126585,0.000435988991472569,0.0598244186619439,0.597013658347586,0,0.113944153435087,0,0,0,0,0.117264905281298,0,0,0,0,0,0,0.175314501664736,0,0.137786636085225,0,0,0,0,0,0,0,0,0,0.120080806872897,0,0.372636498268659,0,0,0,0,0,0.218704065865853,0,0.0901387410143157,-0.497405080126809,-0.110581666674616,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0.101992172187334,0,0,0,0.0971591577001173,0.216080398552055,0.150222899578158,0.16732888760575,0.0598244186619439,0,-0.0672592169170953,0,0.0598244186619439,0,0,-0.175413150643511,-0.257156434859544,0.196741677330542,0,0,0,0,0,0,-0.13777053625572,-0.0848827759306494,-0.183692357678639,0,0,0,0,0
 
|rna_box=43
=== Ontology ===
|rna_catalog_number=
* [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Ontology/ Sample ontology(FF), Cell ontology(CL), Human disease ontology(DOID) and Uber anatomy ontology (UBERON)]
|rna_concentration=
* [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Ontology/ Ontology mapping: FF sample <--> CL, DOID, UBERON, FF term]
|rna_extraction_protocol=
 
|rna_lot_number=
=== CAGEd-oPOSSUM ===
|rna_od260/230=
* [http://cagedop.cmmt.ubc.ca/CAGEd_oPOSSUM/results/precomputed/human/index.html Human]
|rna_od260/280=
* [http://cagedop.cmmt.ubc.ca/CAGEd_oPOSSUM/results/precomputed/mouse/index.html Mouse]
|rna_position=C7
|rna_rin=
|rna_sample_type=
|rna_tube_id=43C7
|rna_weight_ug=
|sample_age=
|sample_category=developmental
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=
|sample_description=
|sample_dev_stage=3 days neonate
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=2104
|sample_note=
|sample_sex=mixture
|sample_species=Mouse (Mus musculus)
|sample_strain=C57BL/6J
|sample_tissue=thymus
|top_motifs=PITX1..3:2.44928602258;RORA:2.28540772304;ALX4:2.26521359701;TEF:2.23176528515;E2F1..5:2.04704843476;ZBTB16:1.85900072825;ELF1,2,4:1.817132296;PPARG:1.77776231749;ETS1,2:1.71525007107;SPZ1:1.69363262134;RUNX1..3:1.69050299822;FOXP1:1.67535603983;AIRE:1.54304046569;TLX2:1.52791551492;DMAP1_NCOR{1,2}_SMARC:1.51181197941;CDX1,2,4:1.50468262215;POU1F1:1.47612185895;SPI1:1.45207819267;IRF1,2:1.34060849358;NFY{A,B,C}:1.21843060039;SPIB:1.19100449959;NFKB1_REL_RELA:1.03892988099;MYB:1.0118460205;FOXD3:0.977980960227;ELK1,4_GABP{A,B1}:0.952214374938;FOXP3:0.937825182004;EN1,2:0.931254043833;NFATC1..3:0.92484044159;PAX4:0.751045933481;POU5F1:0.674051901412;LMO2:0.657174745873;BPTF:0.652152113459;GFI1:0.649061770814;IRF7:0.558215465424;STAT1,3:0.53872257444;PDX1:0.510830014082;RXRA_VDR{dimer}:0.48483356297;SNAI1..3:0.433202757882;NR6A1:0.431269077254;NRF1:0.387423092158;ZEB1:0.385643606321;YY1:0.335529426399;ZNF384:0.314516836874;SOX{8,9,10}:0.303487316249;ZNF143:0.255666627049;NFIX:0.231481724575;TAL1_TCF{3,4,12}:0.194126608114;NANOG{mouse}:0.19106415667;LEF1_TCF7_TCF7L1,2:0.18077612694;ZNF238:0.178827522822;PBX1:0.173247161212;STAT5{A,B}:0.121916721803;TFDP1:0.114426185429;IKZF2:0.106340470305;TOPORS:0.0889359529953;RBPJ:0.0615752765549;OCT4_SOX2{dimer}:0.0414229900277;HOX{A4,D4}:-0.0272218513902;FOX{I1,J2}:-0.0283016437774;SOX2:-0.0403766496066;NKX6-1,2:-0.0410026308509;NR1H4:-0.0726690275357;POU2F1..3:-0.0756335754851;HLF:-0.0801536411276;CRX:-0.0802882585475;SOX17:-0.104331823176;FOXO1,3,4:-0.119911962095;TBP:-0.120218677849;NANOG:-0.135860046594;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.144379402981;HES1:-0.144450558842;FOXM1:-0.153207111685;PRDM1:-0.156495289596;MYOD1:-0.163694687268;KLF4:-0.164753218225;HOX{A5,B5}:-0.171250945688;ATF5_CREB3:-0.189896590428;RREB1:-0.195715557743;SREBF1,2:-0.204106401555;NKX2-1,4:-0.212801518495;BREu{core}:-0.221837569121;CEBPA,B_DDIT3:-0.239415899357;RFX2..5_RFXANK_RFXAP:-0.243399737805;ALX1:-0.249972619479;CUX2:-0.263276606318;NHLH1,2:-0.282833997604;PAX8:-0.289641969031;FOXL1:-0.307677799429;HBP1_HMGB_SSRP1_UBTF:-0.32791804221;PAX6:-0.333854487293;SRF:-0.343789042257;NKX2-2,8:-0.34401843475;NFE2L1:-0.354189945562;GATA6:-0.359563469987;CDC5L:-0.371586487893;FOXQ1:-0.373575867623;TGIF1:-0.381335241609;FOS_FOS{B,L1}_JUN{B,D}:-0.381937743064;POU6F1:-0.385753548104;T:-0.393424811487;ARID5B:-0.394614342459;TBX4,5:-0.424811178824;POU3F1..4:-0.435671718094;FOX{D1,D2}:-0.46226972077;PRRX1,2:-0.475457598087;MTE{core}:-0.483755808322;EBF1:-0.493770518278;ZFP161:-0.502221553901;MZF1:-0.502340603023;SMAD1..7,9:-0.528722472082;JUN:-0.55358754815;ESR1:-0.554785758308;HNF4A_NR2F1,2:-0.565811715837;MEF2{A,B,C,D}:-0.566782534167;HMX1:-0.574132910931;NR5A1,2:-0.594046586315;NKX2-3_NKX2-5:-0.60803748987;RXR{A,B,G}:-0.629188049953;TP53:-0.6315692978;EVI1:-0.647823153659;NKX3-1:-0.649880202465;AR:-0.652054108502;MYFfamily:-0.653471688626;BACH2:-0.656068412789;AHR_ARNT_ARNT2:-0.665562959015;MYBL2:-0.669500640546;ZNF423:-0.70573738373;PATZ1:-0.708998659574;ZNF148:-0.721649358112;RFX1:-0.729301319322;HNF1A:-0.749641694366;MTF1:-0.749825421875;UFEwm:-0.751673299176;EP300:-0.763629021013;GATA4:-0.772951920222;FOX{F1,F2,J1}:-0.778274656741;LHX3,4:-0.790209847676;STAT2,4,6:-0.794431922257;NR3C1:-0.79864893316;CREB1:-0.818881673506;HMGA1,2:-0.830968318602;NFE2:-0.883143378875;FOXA2:-0.894834651868;MED-1{core}:-0.896452781868;DBP:-0.913532892336;VSX1,2:-0.916885445966;bHLH_family:-0.929239776642;PAX2:-0.977682826758;HSF1,2:-0.994881800954;TEAD1:-1.00292716579;SOX5:-1.01434417495;REST:-1.01646643226;EGR1..3:-1.01873969282;HIC1:-1.03421651502;FOXN1:-1.07261969544;GTF2I:-1.08590945969;HAND1,2:-1.08714631265;ATF4:-1.10879234426;FOSL2:-1.11428128743;XCPE1{core}:-1.12496044749;TFAP4:-1.13375524232;TFAP2B:-1.14616447262;MAZ:-1.15875937847;NFIL3:-1.16978429199;MAFB:-1.18230303069;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.19126691397;ESRRA:-1.20060571261;ONECUT1,2:-1.20542556997;ATF2:-1.21705836808;NKX3-2:-1.22819861696;NFE2L2:-1.25096629195;ZIC1..3:-1.25251695296;TFCP2:-1.25647329369;TLX1..3_NFIC{dimer}:-1.26102265331;PAX1,9:-1.26183835701;HOXA9_MEIS1:-1.30315680583;GZF1:-1.33732781315;ZBTB6:-1.34180971264;TFAP2{A,C}:-1.43192942576;GCM1,2:-1.58018149575;IKZF1:-1.58509388069;SP1:-1.59923483325;ATF6:-1.6523160401;ADNP_IRX_SIX_ZHX:-1.6586099854;GFI1B:-1.70805856683;GTF2A1,2:-1.79273074712;GLI1..3:-1.86379165986;PAX5:-2.18211118642;HIF1A:-2.71051908211
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:2104-43C7;search_select_hide=table117:2104-43C7
}}

Revision as of 19:24, 16 February 2022

Data sources used in FANTOM5 SSTAR


CAGE peaks

  • CAGE peak location (with the robust threshold) , annotation, and expression
  • Ontology-based sample term enrichment analysis

Genes

Coexpression module

Motifs

  • Novel motifs GREAT analysis results
  • Novel motifs Significance of the correlation with CAGE expression
  • Jaspar motifs Significance of the correlation with CAGE expression

Sample

Ontology

CAGEd-oPOSSUM

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