FF:10412-106B7: Difference between revisions
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|top_motifs= | |top_motifs=TBX4,5:1.91253225193;IRF7:1.75219240991;ZEB1:1.71246957667;bHLH_family:1.67568738597;ADNP_IRX_SIX_ZHX:1.6661465009;SNAI1..3:1.62316361665;VSX1,2:1.44428552858;RBPJ:1.43296953676;TP53:1.34698100844;POU1F1:1.31146039853;ZNF148:1.12105321735;ELK1,4_GABP{A,B1}:1.09596597469;PITX1..3:1.0200111651;CEBPA,B_DDIT3:0.963425872828;TEAD1:0.955326669572;FOXN1:0.939848064163;PDX1:0.906759898973;MYOD1:0.89709044638;YY1:0.888302878667;E2F1..5:0.853275695389;POU2F1..3:0.818131107722;NKX6-1,2:0.795047247526;IRF1,2:0.781558737926;TFDP1:0.781308030842;EP300:0.777544260306;TFAP2{A,C}:0.774250949299;FOXQ1:0.769129690233;FOXO1,3,4:0.764816328056;FOS_FOS{B,L1}_JUN{B,D}:0.750393212505;NR6A1:0.727781101561;CDC5L:0.68757531595;ATF4:0.658341121704;FOSL2:0.614470306447;STAT5{A,B}:0.569896030907;BACH2:0.560595526512;FOXP1:0.547337182597;NANOG:0.538126463099;FOXA2:0.482507762099;NKX2-1,4:0.477988900231;FOXM1:0.45806541932;AHR_ARNT_ARNT2:0.450345296263;ATF2:0.413802347627;FOX{I1,J2}:0.386988571861;OCT4_SOX2{dimer}:0.385844608208;HLF:0.361920995425;ZBTB6:0.35055378354;NFY{A,B,C}:0.349650078518;EN1,2:0.347411360972;IKZF1:0.345699568356;RORA:0.341639657569;PAX2:0.337810107251;NKX2-3_NKX2-5:0.336150091197;TLX1..3_NFIC{dimer}:0.333971189971;NFE2:0.328386530729;GLI1..3:0.327088018264;HIF1A:0.308760451454;SOX2:0.305750507391;FOX{D1,D2}:0.304966585674;FOXD3:0.301371255534;MED-1{core}:0.301103399101;HBP1_HMGB_SSRP1_UBTF:0.295794993093;POU5F1:0.266014280055;GFI1B:0.226363045083;MYBL2:0.216508707902;POU6F1:0.213890649499;ATF5_CREB3:0.185839039622;TBP:0.185331084993;NFKB1_REL_RELA:0.169347517136;HOXA9_MEIS1:0.168922840842;NKX2-2,8:0.142411989154;GFI1:0.142080546681;ELF1,2,4:0.131601399728;SMAD1..7,9:0.117624851162;CRX:0.0965551621785;ZNF143:0.0932391214643;PRRX1,2:0.0664940182506;HAND1,2:0.0630620766731;SOX17:0.0342595920785;HOX{A6,A7,B6,B7}:0.00608878628209;LMO2:-0.000531745704037;HMGA1,2:-0.00503160211274;ONECUT1,2:-0.0171709595852;STAT2,4,6:-0.0308842720146;LHX3,4:-0.0414698427755;HNF1A:-0.05261772954;GTF2A1,2:-0.0537746802274;SOX{8,9,10}:-0.0669521429432;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0739449304173;GCM1,2:-0.084155872924;MYB:-0.0927481168502;GTF2I:-0.128914429571;BPTF:-0.136996542399;ETS1,2:-0.13739051241;DMAP1_NCOR{1,2}_SMARC:-0.139206549396;STAT1,3:-0.154008923131;NFIL3:-0.161273298201;ZNF238:-0.165272357876;ZNF384:-0.170255854468;ZFP161:-0.173280332965;PAX8:-0.178766050394;AIRE:-0.179492771098;PBX1:-0.183275514927;NFIX:-0.190967040297;EBF1:-0.209172297079;FOX{F1,F2,J1}:-0.222540627991;PRDM1:-0.223268095024;MTF1:-0.225229113823;PAX1,9:-0.236913326506;MTE{core}:-0.244977998816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.253518642655;RFX1:-0.256470054808;MAZ:-0.259322041621;MEF2{A,B,C,D}:-0.259650132208;LEF1_TCF7_TCF7L1,2:-0.263851704592;RUNX1..3:-0.28338621513;RFX2..5_RFXANK_RFXAP:-0.286489895557;NRF1:-0.288016881195;ARID5B:-0.289471802135;JUN:-0.289605719331;SPIB:-0.30099569609;GATA6:-0.308284420364;ZNF423:-0.30976157073;DBP:-0.310068669807;MYFfamily:-0.31569036818;PPARG:-0.321765717345;SREBF1,2:-0.331591827585;PAX4:-0.35281905292;NFE2L2:-0.359993396434;TFAP2B:-0.372704639306;TOPORS:-0.380431495394;ESRRA:-0.393497017391;NKX3-2:-0.403613985216;SPI1:-0.409755407786;HOX{A5,B5}:-0.415096586739;TLX2:-0.422619191548;ZBTB16:-0.427579773013;CUX2:-0.427888562782;MZF1:-0.428638594796;CREB1:-0.433343718892;GZF1:-0.447786686621;NR3C1:-0.448280944303;ATF6:-0.457072283466;HOX{A4,D4}:-0.462345156172;FOXL1:-0.464543459366;HNF4A_NR2F1,2:-0.473511502011;PAX3,7:-0.478522897444;HES1:-0.490798852871;NKX3-1:-0.498735938845;RREB1:-0.507692263037;XCPE1{core}:-0.511013681696;NR5A1,2:-0.513340637087;SOX5:-0.513595082782;REST:-0.520041433443;BREu{core}:-0.522078433609;TFCP2:-0.529006153052;HSF1,2:-0.5458990035;T:-0.563812627281;AR:-0.571014124332;HIC1:-0.576385489892;SRF:-0.587205368407;SP1:-0.587953564229;ESR1:-0.599378777212;ALX1:-0.635753969863;MAFB:-0.680563747821;TEF:-0.707558403451;IKZF2:-0.711182346685;GATA4:-0.82553294186;NFATC1..3:-0.828792315594;NHLH1,2:-0.831838060831;EGR1..3:-0.842159275805;TFAP4:-0.844683189479;TGIF1:-0.853987567323;PATZ1:-0.85546605466;UFEwm:-0.858625774439;NR1H4:-0.867846288489;CDX1,2,4:-0.876731284768;KLF4:-0.913699078791;PAX6:-0.921301729475;ALX4:-0.926351751786;FOXP3:-0.979365168625;RXR{A,B,G}:-1.06751927158;TAL1_TCF{3,4,12}:-1.11285435545;ZIC1..3:-1.11941649136;HMX1:-1.25587391238;NFE2L1:-1.305809194;EVI1:-1.32118949944;POU3F1..4:-1.32599303148;XBP1:-1.36020802472;SPZ1:-1.42368861898;RXRA_VDR{dimer}:-1.42731028826;PAX5:-1.54227010165;NANOG{mouse}:-2.07037368015 | ||
|comment= | |comment= | ||
|created_by= | |created_by= |
Revision as of 18:00, 14 March 2012
Name: | malignant trichilemmal cyst cell line:DJM-1 |
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Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ExpandAdditional information |
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ExpandDownload raw sequence, BAM & CTSS |
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Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10730
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10730
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10730
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
DOID: Disease
0050687 (cell type cancer)
14566 (disease of cellular proliferation)
162 (cancer)
1749 (squamous cell carcinoma)
305 (carcinoma)
4 (disease)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA