FF:10414-106B9: Difference between revisions
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|top_motifs= | |top_motifs=LEF1_TCF7_TCF7L1,2:3.6878587106;SNAI1..3:2.18253750219;ZEB1:2.18048013125;LMO2:1.97565533715;FOXN1:1.87286132187;ELK1,4_GABP{A,B1}:1.72573251821;bHLH_family:1.71002556975;SOX2:1.44863769332;NRF1:1.44547320478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.36374674548;VSX1,2:1.30352883814;RORA:1.27182096818;NKX6-1,2:1.27069813054;AHR_ARNT_ARNT2:1.21005165098;FOX{F1,F2,J1}:1.18630915443;ZNF143:1.17264258923;RFX1:1.14821171191;MYOD1:1.12891002328;RFX2..5_RFXANK_RFXAP:1.10926440161;NFIX:1.08286102539;SOX17:1.07432865147;NFY{A,B,C}:1.06901605083;FOXO1,3,4:1.06552353333;ATF4:1.06094498768;PAX8:1.02628659123;TFDP1:1.01743726695;HIF1A:1.01682400743;AIRE:1.0089332571;ADNP_IRX_SIX_ZHX:0.976385101819;HAND1,2:0.958641884623;FOX{I1,J2}:0.893096141476;XBP1:0.890119502128;NKX2-3_NKX2-5:0.870353498503;LHX3,4:0.859114348449;SOX{8,9,10}:0.850015946345;TFAP2B:0.80370800121;SP1:0.803281182908;PITX1..3:0.797762752719;GFI1:0.79079102302;T:0.767847641088;NKX2-1,4:0.69704654423;TFAP2{A,C}:0.693201984022;ZFP161:0.525457560457;BREu{core}:0.512350211546;NANOG:0.508360892485;XCPE1{core}:0.501564809843;FOXA2:0.49643226018;FOXP1:0.493548444346;PRRX1,2:0.474270958716;MED-1{core}:0.47178059273;MYB:0.45589992041;CRX:0.453317377709;BPTF:0.430583311259;ATF6:0.418559142806;SREBF1,2:0.410110650307;FOX{D1,D2}:0.402783844296;ATF5_CREB3:0.391585222327;E2F1..5:0.387184945735;NKX3-2:0.37990053445;MTE{core}:0.33051214499;RBPJ:0.324907024871;CDC5L:0.317028171493;ALX1:0.316152220827;STAT1,3:0.283452900195;ZBTB16:0.269439784841;TEF:0.266661629811;PATZ1:0.264573582689;NR6A1:0.213611340165;CREB1:0.166180970107;NFE2:0.161126775692;CUX2:0.15771583549;OCT4_SOX2{dimer}:0.147132494857;ATF2:0.120026854745;CEBPA,B_DDIT3:0.0906787447345;HNF1A:0.0906694818066;NFE2L2:0.0849796030179;CDX1,2,4:0.0832176813991;PBX1:0.0814288576345;HOXA9_MEIS1:0.0660948933103;ARID5B:0.0622929340339;HNF4A_NR2F1,2:0.0593381673777;PAX2:0.0499079750925;EGR1..3:0.0305382895963;POU5F1:0.0243410373573;HIC1:0.00743923779732;YY1:-0.00088247679353;ONECUT1,2:-0.00876050235469;PDX1:-0.0232638924145;STAT5{A,B}:-0.0273064397159;DBP:-0.0417767670659;HLF:-0.0524128524695;NHLH1,2:-0.0711949258452;FOXQ1:-0.0948101747543;TP53:-0.0979707865538;PAX5:-0.106870562482;POU6F1:-0.127835187073;ELF1,2,4:-0.148183210095;GTF2A1,2:-0.153063564399;TOPORS:-0.160205513135;MTF1:-0.179187008324;TGIF1:-0.181327243767;HOX{A4,D4}:-0.181533090017;FOXM1:-0.188297918003;JUN:-0.197891488788;GTF2I:-0.220028161906;REST:-0.225349390074;MEF2{A,B,C,D}:-0.225950203667;FOSL2:-0.227272703333;BACH2:-0.228038626654;HOX{A6,A7,B6,B7}:-0.231952703637;GFI1B:-0.233331817517;POU2F1..3:-0.240521578879;MYFfamily:-0.243442900346;POU1F1:-0.243511187221;TBX4,5:-0.275626399476;FOXD3:-0.286118011851;NKX2-2,8:-0.29939519102;FOS_FOS{B,L1}_JUN{B,D}:-0.302133942982;IKZF2:-0.34458505388;SOX5:-0.348264695932;EBF1:-0.348446081527;ZNF423:-0.372377665367;HOX{A5,B5}:-0.376240461687;EVI1:-0.390941449565;TEAD1:-0.416915398028;RREB1:-0.424302624919;HSF1,2:-0.427832950991;PAX4:-0.436518518174;EN1,2:-0.440987849189;MYBL2:-0.448519544894;POU3F1..4:-0.454401535936;MAFB:-0.454571961646;ZNF148:-0.464533476221;GZF1:-0.477413720172;TAL1_TCF{3,4,12}:-0.495487339216;AR:-0.495505283778;NFIL3:-0.502122136386;HBP1_HMGB_SSRP1_UBTF:-0.507783996753;SPIB:-0.508355160839;TLX2:-0.520418431877;NFKB1_REL_RELA:-0.534441493179;PAX3,7:-0.543646446592;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548028350714;NR5A1,2:-0.578106859981;TLX1..3_NFIC{dimer}:-0.583823035813;ZBTB6:-0.595297625195;IRF7:-0.596180956958;TFCP2:-0.598100531769;DMAP1_NCOR{1,2}_SMARC:-0.59878700406;ZNF384:-0.599491235971;GATA6:-0.645933217049;MZF1:-0.651736429745;ZIC1..3:-0.669841514692;IKZF1:-0.681242619636;NKX3-1:-0.705857644012;ETS1,2:-0.712865222175;TFAP4:-0.716554557867;RUNX1..3:-0.738409271544;EP300:-0.743965767139;ESRRA:-0.774555327136;FOXP3:-0.784521899153;MAZ:-0.795890567491;PAX6:-0.818405296557;FOXL1:-0.826432678981;NANOG{mouse}:-0.84828534274;PAX1,9:-0.848560749894;ZNF238:-0.851863697402;IRF1,2:-0.858839728268;SPI1:-0.898692550784;HES1:-0.924076941622;GATA4:-0.970439927582;ESR1:-0.970920352738;KLF4:-0.987764418057;ALX4:-0.992934462418;PRDM1:-0.995081556438;TBP:-1.00569414754;UFEwm:-1.00977254969;NR3C1:-1.17998306729;SMAD1..7,9:-1.1978927826;GLI1..3:-1.26799685892;HMGA1,2:-1.29037075305;RXRA_VDR{dimer}:-1.31251474039;HMX1:-1.34709449466;GCM1,2:-1.35954788164;NFE2L1:-1.38750079116;NFATC1..3:-1.52918497278;STAT2,4,6:-1.5549991949;NR1H4:-1.60920873795;SRF:-1.94040228797;PPARG:-2.07762447135;SPZ1:-2.10547381404;RXR{A,B,G}:-2.22702375589 | ||
|comment= | |comment= | ||
|created_by= | |created_by= |
Revision as of 18:00, 14 March 2012
Name: | maxillary sinus tumor cell line:HSQ-89 |
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Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ExpandAdditional information |
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ExpandDownload raw sequence, BAM & CTSS |
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Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10732
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10732
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10732
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:1357 maxillary sinus cancer
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0001764 maxillary sinus
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000033 (head)
0000061 (anatomical structure)
0000153 (anterior region of body)
0000464 (anatomical space)
0000465 (material anatomical entity)
0000466 (immaterial anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000480 (anatomical group)
0001004 (respiratory system)
0001062 (anatomical entity)
0001764 (maxillary sinus)
0001825 (paranasal sinus)
0002553 (anatomical cavity)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA