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(Created page with "{{DOID |id=DOID:3905 |name=lung carcinoma |namespace= |def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and h...")
 
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|id=DOID:3905
|id=DOID:3905
|name=lung carcinoma
|name=lung carcinoma
|namespace=
|namespace=disease_ontology
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
|xref=
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
|is_a=DOID:1324
|is_a=DOID:1324
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
|comment=
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 14:00, 11 June 2012

Name:lung carcinoma
Namespace:disease_ontology
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https\://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr14:88452908..88452916,-#_ff13f51a990286586a726a44f2e602cap@chr14:88452908..88452916, -
2.62e-23FFCP PHASE1:Hg19::chr2:23850222..23850227,+#_ff13f51a990286586a726a44f2e602cap@chr2:23850222..23850227, +
2.62e-23FFCP PHASE1:Hg19::chr18:73967160..73967162,-#_ff13f51a990286586a726a44f2e602cap@chr18:73967160..73967162, -
2.62e-23FFCP PHASE2:Hg19::chr21:11130568..11130575,+#_ff13f51a990286586a726a44f2e602cap@chr21:11130568..11130575, +
2.62e-23FFCP PHASE2:Hg19::chr10:29213480..29213487,-#_ff13f51a990286586a726a44f2e602cap@chr10:29213480..29213487, -
2.62e-23FFCP PHASE1:Hg19::chr5:134907210..134907215,-#_ff13f51a990286586a726a44f2e602cap@chr5:134907210..134907215, -
2.62e-23FFCP PHASE2:Hg19::chr6:154858754..154858762,+#_ff13f51a990286586a726a44f2e602cap@chr6:154858754..154858762, +
2.62e-23FFCP PHASE2:Hg19::chr2:75145327..75145329,+#_ff13f51a990286586a726a44f2e602cap9@ENST00000435984
2.62e-23FFCP PHASE2:Hg19::chr1:100110851..100110860,+#_ff13f51a990286586a726a44f2e602cap@chr1:100110851..100110860, +
2.62e-23FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000430271
2.62e-23FFCP PHASE1:Hg19::chr15:62007373..62007374,-#_ff13f51a990286586a726a44f2e602cap2@ENST00000559590
2.62e-23FFCP PHASE2:Hg19::chr5:28572013..28572023,-#_ff13f51a990286586a726a44f2e602cap@chr5:28572013..28572023, -
2.62e-23FFCP PHASE2:Hg19::chr2:220594700..220594702,+#_ff13f51a990286586a726a44f2e602cap6@ENST00000442416
2.62e-23FFCP PHASE2:Hg19::chr13:109644678..109644725,+#_ff13f51a990286586a726a44f2e602cap@chr13:109644678..109644725, +
2.62e-23FFCP PHASE1:Hg19::chr2:97625602..97625628,-#_ff13f51a990286586a726a44f2e602cap@chr2:97625602..97625628, -
2.62e-23FFCP PHASE1:Hg19::chr2:208001650..208001675,-#_ff13f51a990286586a726a44f2e602cap@chr2:208001650..208001675, -
2.62e-23FFCP PHASE2:Hg19::chr7:158237237..158237241,+#_ff13f51a990286586a726a44f2e602cap@chr7:158237237..158237241, +
2.62e-23FFCP PHASE2:Hg19::chr3:95401649..95401655,-#_ff13f51a990286586a726a44f2e602cap3@ENST00000463799
2.62e-23FFCP PHASE1:Hg19::chr3:86701921..86701925,-#_ff13f51a990286586a726a44f2e602cap@chr3:86701921..86701925, -
2.62e-23FFCP PHASE2:Hg19::chr9:95426545..95426559,-#_ff13f51a990286586a726a44f2e602cap@chr9:95426545..95426559, -
2.62e-23FFCP PHASE1:Hg19::chr16:13010571..13010578,+#_ff13f51a990286586a726a44f2e602cap@chr16:13010571..13010578, +
2.62e-23FFCP PHASE2:Hg19::chr8:97962018..97962029,-#_ff13f51a990286586a726a44f2e602cap@chr8:97962018..97962029, -
2.62e-23FFCP PHASE1:Hg19::chr14:60194446..60194457,-#_ff13f51a990286586a726a44f2e602cap16@RTN1
2.62e-23FFCP PHASE1:Hg19::chr7:26482694..26482710,-#_ff13f51a990286586a726a44f2e602cap@chr7:26482694..26482710, -
2.62e-23FFCP PHASE1:Hg19::chr2:135120480..135120481,+#_ff13f51a990286586a726a44f2e602cap@chr2:135120480..135120481, +
2.62e-23FFCP PHASE1:Hg19::chr12:76206813..76206837,-#_ff13f51a990286586a726a44f2e602cap@chr12:76206813..76206837, -
2.62e-23FFCP PHASE2:Hg19::chr3:26426173..26426176,+#_ff13f51a990286586a726a44f2e602cap@chr3:26426173..26426176, +
2.62e-23FFCP PHASE2:Hg19::chr2:51255348..51255351,+#_ff13f51a990286586a726a44f2e602cap@chr2:51255348..51255351, +
2.62e-23FFCP PHASE2:Hg19::chr1:225650299..225650317,-#_ff13f51a990286586a726a44f2e602cap@chr1:225650299..225650317, -
2.62e-23FFCP PHASE1:Hg19::chr3:1991867..1991875,-#_ff13f51a990286586a726a44f2e602cap@chr3:1991867..1991875, -
2.62e-23FFCP PHASE1:Hg19::chr1:199134722..199134729,+#_ff13f51a990286586a726a44f2e602cap@chr1:199134722..199134729, +
2.62e-23FFCP PHASE2:Hg19::chr7:79840323..79840338,+#_ff13f51a990286586a726a44f2e602cap@chr7:79840323..79840338, +
2.62e-23FFCP PHASE2:Hg19::chr18:10085817..10085825,+#_ff13f51a990286586a726a44f2e602cap@chr18:10085817..10085825, +
2.62e-23FFCP PHASE2:Hg19::chr12:84664736..84664743,+#_ff13f51a990286586a726a44f2e602cap2@ENST00000547882
2.62e-23FFCP PHASE1:Hg19::chr2:68113370..68113379,-#_ff13f51a990286586a726a44f2e602cap@chr2:68113370..68113379, -
2.62e-23FFCP PHASE1:Hg19::chr2:192805413..192805418,+#_ff13f51a990286586a726a44f2e602cap@chr2:192805413..192805418, +
2.62e-23FFCP PHASE1:Hg19::chr19:7834829..7834834,+#_ff13f51a990286586a726a44f2e602cap@chr19:7834829..7834834, +
2.62e-23FFCP PHASE2:Hg19::chr3:86701902..86701920,-#_ff13f51a990286586a726a44f2e602cap@chr3:86701902..86701920, -
2.62e-23FFCP PHASE2:Hg19::chr3:102635473..102635480,-#_ff13f51a990286586a726a44f2e602cap@chr3:102635473..102635480, -
2.62e-23FFCP PHASE2:Hg19::chr11:1643561..1643566,+#_ff13f51a990286586a726a44f2e602cap@chr11:1643561..1643566, +
2.62e-23FFCP PHASE1:Hg19::chrX:97443927..97443947,+#_ff13f51a990286586a726a44f2e602cap@chrX:97443927..97443947, +
2.62e-23FFCP PHASE1:Hg19::chr4:37653629..37653673,-#_ff13f51a990286586a726a44f2e602cap@chr4:37653629..37653673, -
2.62e-23FFCP PHASE1:Hg19::chr3:78334430..78334433,-#_ff13f51a990286586a726a44f2e602cap@chr3:78334430..78334433, -
2.62e-23FFCP PHASE1:Hg19::chr15:97554594..97554599,-#_ff13f51a990286586a726a44f2e602cap@chr15:97554594..97554599, -
2.62e-23FFCP PHASE2:Hg19::chr8:85893922..85893940,+#_ff13f51a990286586a726a44f2e602cap@chr8:85893922..85893940, +
2.62e-23FFCP PHASE1:Hg19::chr12:41194014..41194019,+#_ff13f51a990286586a726a44f2e602cap@chr12:41194014..41194019, +
2.62e-23FFCP PHASE2:Hg19::chr2:238385078..238385087,-#_ff13f51a990286586a726a44f2e602cap@chr2:238385078..238385087, -
2.62e-23FFCP PHASE1:Hg19::chr9:17454052..17454060,+#_ff13f51a990286586a726a44f2e602cap@chr9:17454052..17454060, +
2.62e-23FFCP PHASE1:Hg19::chr6:23637684..23637686,-#_ff13f51a990286586a726a44f2e602cap@chr6:23637684..23637686, -
2.62e-23FFCP PHASE2:Hg19::chr10:129703377..129703388,+#_ff13f51a990286586a726a44f2e602cap@chr10:129703377..129703388, +
2.62e-23FFCP PHASE1:Hg19::chr8:100549773..100549807,-#_ff13f51a990286586a726a44f2e602cap@chr8:100549773..100549807, -
2.62e-23FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_ff13f51a990286586a726a44f2e602cap16@CPXM1
2.62e-23FFCP PHASE2:Hg19::chr8:98075951..98075959,-#_ff13f51a990286586a726a44f2e602cap@chr8:98075951..98075959, -
2.62e-23FFCP PHASE2:Hg19::chr3:194808375..194808396,+#_ff13f51a990286586a726a44f2e602cap@chr3:194808375..194808396, +
2.62e-23FFCP PHASE1:Hg19::chr9:97856010..97856019,+#_ff13f51a990286586a726a44f2e602cap@chr9:97856010..97856019, +
2.62e-23FFCP PHASE1:Hg19::chr8:98015616..98015617,-#_ff13f51a990286586a726a44f2e602cap@chr8:98015616..98015617, -
2.62e-23FFCP PHASE1:Hg19::chr3:189838995..189839000,-#_ff13f51a990286586a726a44f2e602cap31@LEPREL1
2.62e-23FFCP PHASE1:Hg19::chr1:188856567..188856573,-#_ff13f51a990286586a726a44f2e602cap2@ENST00000414765
2.62e-23FFCP PHASE2:Hg19::chr7:7749088..7749127,+#_ff13f51a990286586a726a44f2e602cap@chr7:7749088..7749127, +
2.62e-23FFCP PHASE2:Hg19::chr4:185426203..185426209,-#_ff13f51a990286586a726a44f2e602cap@chr4:185426203..185426209, -

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