DOID:201: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{DOID
|id=DOID:201
|name=connective tissue cancer
|namespace=
|def="A musculoskeletal system cancer that is located_in connective tissue." [url:http\://en.wikipedia.org/w...") |
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|id=DOID:201 | |id=DOID:201 | ||
|name=connective tissue cancer | |name=connective tissue cancer | ||
|namespace= | |namespace=disease_ontology | ||
|def="A musculoskeletal system cancer that is located_in connective tissue." [url:http\://en.wikipedia.org/wiki/Connective_tissue] | |def="A musculoskeletal system cancer that is located_in connective tissue." [url:http\://en.wikipedia.org/wiki/Connective_tissue] | ||
|xref= | |xref=MSH:D009372;;SNOMEDCT_2010_1_31:126598008;;SNOMEDCT_2010_1_31:254821003;;UMLS_CUI:C0027656 | ||
|is_a=DOID:0060100 | |is_a=DOID:0060100 | ||
|synonym="connective tissue neoplasm" EXACT [CSP2005:2008-3809];;"neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008];;"Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003] | |synonym="connective tissue neoplasm" EXACT [CSP2005:2008-3809];;"neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008];;"Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003] | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |||
|is_obsolete= | |||
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}} | }} | ||
Revision as of 13:59, 11 June 2012
| Name: | connective tissue cancer | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "A musculoskeletal system cancer that is located_in connective tissue." [url:http\://en.wikipedia.org/wiki/Connective_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"connective tissue neoplasm" EXACT [CSP2005:2008-3809] "neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008] "Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0060100(musculoskeletal system cancer) |
|---|
Children
| is a: | DOID:200 (giant cell tumor),DOID:3347 (osteosarcoma),DOID:3355 (fibrosarcoma),DOID:3371 (chondrosarcoma),DOID:3939 (lipomatous cancer),DOID:4231 (histiocytoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10720-109I9
- 10731-110B2
Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10720-109I9
- 10731-110B2
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:201 (connective tissue cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:27806224..27806236,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p5@ZNF512 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr14:83319766..83319776,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr14:83319766..83319776, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:139817600..139817609,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:139817600..139817609, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23027835..23027846,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23027835..23027846, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:39548606..39548614,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:39548606..39548614, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:41281630..41281644,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p6@RAB4B |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152589396..152589401,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p68@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157206082..157206087,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157206082..157206087, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152589452..152589462,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p43@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:158989981..158989988,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:158989981..158989988, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:12848028..12848033,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:12848028..12848033, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141813..2141822,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141813..2141822, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:135338270..135338275,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chrX:135338270..135338275, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:99680705..99680734,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:99680705..99680734, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:150740842..150740854,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:150740842..150740854, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:135338329..135338337,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chrX:135338329..135338337, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:196296715..196296737,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:196296715..196296737, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr21:38309134..38309135,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr21:38309134..38309135, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2141785..2141802,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141785..2141802, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23733790..23733815,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23733790..23733815, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2139856..2139863,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2139856..2139863, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:71031372..71031377,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p25@PTPRB |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:198595872..198595878,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:198595872..198595878, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:80080929..80080934,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr7:80080929..80080934, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr21:17357327..17357329,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr21:17357327..17357329, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:74780643..74780673,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p30@LOXL3 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23733790..23733815,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23733790..23733815, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:142987388..142987398,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:142987388..142987398, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:112916133..112916138,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:112916133..112916138, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23169005..23169009,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23169005..23169009, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:188420455..188420469,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:188420455..188420469, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:163194047..163194081,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:163194047..163194081, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:188420470..188420480,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:188420470..188420480, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:192408018..192408032,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:192408018..192408032, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:70636933..70636940,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p28@CNOT2 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:197873492..197873502,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:197873492..197873502, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:70351934..70351939,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:70351934..70351939, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:63700076..63700086,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:63700076..63700086, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:145124273..145124279,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:145124273..145124279, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:63700017..63700022,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:63700017..63700022, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:157230506..157230511,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230506..157230511, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23169005..23169009,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23169005..23169009, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:172009977..172009985,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:172009977..172009985, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:157230582..157230593,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157230582..157230593, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152592460..152592465,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:152592460..152592465, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr7:18439510..18439521,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr7:18439510..18439521, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr18:74961699..74961708,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p5@GALR1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:33244345..33244348,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:33244345..33244348, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141949..2141956,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p21@CNTN4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:33244066..33244083,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:33244066..33244083, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:127441545..127441550,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p58@MGLL |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:96181421..96181428,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:96181421..96181428, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr7:18439523..18439524,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr7:18439523..18439524, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152589291..152589303,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p38@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:80818259..80818266,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:80818259..80818266, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:154942216..154942223,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:154942216..154942223, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:30257128..30257133,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr11:30257128..30257133, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:96181433..96181441,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr15:96181433..96181441, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:72885984..72885997,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:72885984..72885997, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:30252646..30252648,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr11:30252646..30252648, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2140234..2140235,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p36@CNTN4 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:152589315..152589320,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p72@SYNE1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:154942376..154942386,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:154942376..154942386, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:2141888..2141892,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141888..2141892, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:2141746..2141758,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:2141746..2141758, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:106921055..106921063,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:106921055..106921063, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:79920639..79920642,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:79920639..79920642, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:228806586..228806591,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:228806586..228806591, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:107074457..107074458,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr8:107074457..107074458, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:99508248..99508255,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:99508248..99508255, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:177555440..177555446,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:177555440..177555446, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:150735014..150735021,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr6:150735014..150735021, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:145473286..145473295,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p5@AB464458 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:80818259..80818266,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:80818259..80818266, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:190023542..190023552,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:190023542..190023552, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:197873492..197873502,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:197873492..197873502, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:46884845..46884851,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr12:46884845..46884851, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:79634044..79634053, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:128083909..128083918,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:128083909..128083918, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:197890538..197890548,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:197890538..197890548, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:26425339..26425342,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr18:26425339..26425342, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr11:101742272..101742276, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:53436150..53436154,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr2:53436150..53436154, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr14:88322648..88322655,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr14:88322648..88322655, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:169935453..169935460,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:169935453..169935460, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:1577545..1577547,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:1577545..1577547, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr13:23027882..23027888,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23027882..23027888, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:108955070..108955084,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p16@SART3 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:169935479..169935481,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr4:169935479..169935481, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:1577559..1577577,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:1577559..1577577, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr1:197889977..197890013,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr1:197889977..197890013, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr18:22251681..22251685,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr18:22251681..22251685, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:39548606..39548614,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr5:39548606..39548614, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:41281630..41281644,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p6@RAB4B |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:54786954..54786965,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr10:54786954..54786965, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:18993581..18993586,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr9:18993581..18993586, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr3:30442082..30442087,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:30442082..30442087, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr3:157206082..157206087,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr3:157206082..157206087, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr13:23027882..23027888,+#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p@chr13:23027882..23027888, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:152589452..152589462,-#_8ecbf1d24e09ee5b2b3545dd0b85df3d | p43@SYNE1 |
