UBERON:0005358: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005358
|name=ventricle of nervous system
|namespace=
|def=
|xref=FMA:242770
|is_a=UBERON:0000073;;UBERON:0002300
|synonym="Region of wall of ventri...") |
No edit summary |
||
| Line 21: | Line 21: | ||
|part_of=UBERON:0001016 | |part_of=UBERON:0001016 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:22, 15 June 2012
| Name: | ventricle of nervous system | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: | "Region of wall of ventricular system of neuraxis" EXACT [FMA:242770] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000073(regional part of nervous system),UBERON:0002300() |
|---|---|
| part_of: | UBERON:0001016(nervous system) |
Children
| is a: | UBERON:0004086 (brain ventricle) |
|---|---|
| part of: | UBERON:0005283 (tela choroidea) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005358 (ventricle of nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_4fe15be917483f7ec02a6d30cbd2fa07 | p58@NAV1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_4fe15be917483f7ec02a6d30cbd2fa07 | p55@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_4fe15be917483f7ec02a6d30cbd2fa07 | p58@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_4fe15be917483f7ec02a6d30cbd2fa07 | p55@NAV1 |
| 8.99e-131 | FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_57329450699578ea6dec1fca6713422f | p@chr8:24997361..24997368, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_57329450699578ea6dec1fca6713422f | p@chr8:24997361..24997368, - |
| 3.96e-66 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_cb38fde2cdab92a49157aa2dc7cc0109 | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_cb38fde2cdab92a49157aa2dc7cc0109 | p73@SEPT9 |
| 3.96e-66 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_cb38fde2cdab92a49157aa2dc7cc0109 | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_cb38fde2cdab92a49157aa2dc7cc0109 | p73@SEPT9 |
| 4.77e-57 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_3167fbf8662cad8875ee4c4b7e75b303 | p@chr12:15941738..15941768, + |
| 4.77e-57 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_3167fbf8662cad8875ee4c4b7e75b303 | p@chr12:15941738..15941768, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_b9cde97afcead35d2ec59d1c7113bb3c | p@chr5:149537789..149537803, - |
| 6.36e-57 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_b9cde97afcead35d2ec59d1c7113bb3c | p@chr5:149537789..149537803, - |
| 8.82e-51 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_abd78c66292632d16235b2093ac5709c | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_abd78c66292632d16235b2093ac5709c | p7@OBFC1 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_abd78c66292632d16235b2093ac5709c | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_abd78c66292632d16235b2093ac5709c | p7@OBFC1 |
| 5.15e-50 | FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_f2aac2dfda5d348cb8b16f81719d2958 | p@chr16:65159735..65159744, - |
| 5.15e-50 | FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_f2aac2dfda5d348cb8b16f81719d2958 | p@chr16:65159735..65159744, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_e27460301ed181452685dea79f8c6e0d | p20@EBF1 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_e27460301ed181452685dea79f8c6e0d | p20@EBF1 |
| 1.53e-44 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_acb6a7aeb76710c12c7fc21836c34a0c | p@chr11:60680190..60680212, + |
| 1.53e-44 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_acb6a7aeb76710c12c7fc21836c34a0c | p@chr11:60680190..60680212, + |
| 5.99e-41 | FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_4c6bae3bf68623117ad2311eca417e14 | p7@METTL11A |
| 5.99e-41 | FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_4c6bae3bf68623117ad2311eca417e14 | p7@METTL11A |
| 8.98e-41 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_33495049a5098186cb289f28dcf9170a | p@chr1:19778678..19778689, - |
| 8.98e-41 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_33495049a5098186cb289f28dcf9170a | p@chr1:19778678..19778689, - |
| 1.34e-40 | FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_0cf78a4ea60b3c8d6db419e8d8f7d6c5 | p8@ENPEP |
| 1.34e-40 | FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_0cf78a4ea60b3c8d6db419e8d8f7d6c5 | p8@ENPEP |
| 9.84e-37 | FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_8bcb00e21b8305b5f952151f259bb357 | p3@ALX4 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_8bcb00e21b8305b5f952151f259bb357 | p3@ALX4 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_a92625bcf7dc2bc94b985efc0ed79588 | p@chr1:236203048..236203055, - |
| 1.18e-36 | FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_a92625bcf7dc2bc94b985efc0ed79588 | p@chr1:236203048..236203055, - |
| 1.42e-36 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_1c2febe9d4d8918757501f76a060d304 | p20@RIMS1 |
| 1.42e-36 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_1c2febe9d4d8918757501f76a060d304 | p20@RIMS1 |
| 1.7e-36 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_fc1bf1a20ff636186c8a277a194139db | p@chr14:87636652..87636657, - |
| 1.7e-36 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_fc1bf1a20ff636186c8a277a194139db | p@chr14:87636652..87636657, - |
| 2.04e-36 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_ee2aa802aaeca06638d7d40a383fc810 | p30@PRKCH |
| 2.04e-36 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_ee2aa802aaeca06638d7d40a383fc810 | p30@PRKCH |
| 1.11e-34 | FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_ea0b940d45bd93df6c14886dac4bba8b | p5@CMKLR1 |
| 1.11e-34 | FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_ea0b940d45bd93df6c14886dac4bba8b | p5@CMKLR1 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_e89b76514498bb29c55fb597c26cc39a | p11@SLC25A25 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_e89b76514498bb29c55fb597c26cc39a | p11@SLC25A25 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_69632efdc3b5b0652412ed2dcbf2bec4 | p@chr15:95869480..95869493, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_69632efdc3b5b0652412ed2dcbf2bec4 | p@chr15:95869480..95869493, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_69632efdc3b5b0652412ed2dcbf2bec4 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_69632efdc3b5b0652412ed2dcbf2bec4 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_69632efdc3b5b0652412ed2dcbf2bec4 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_69632efdc3b5b0652412ed2dcbf2bec4 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_69632efdc3b5b0652412ed2dcbf2bec4 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_69632efdc3b5b0652412ed2dcbf2bec4 | p17@PVT1 |
| 1.37e-31 | FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_e60478ffaae893c09b51cdd280e6f905 | p3@MOGAT1 |
| 1.37e-31 | FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_e60478ffaae893c09b51cdd280e6f905 | p3@MOGAT1 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_910ffd3942c05bbd74f5f3554fdc9669 | p@chr5:134260455..134260471, - |
| 4.71e-31 | FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_910ffd3942c05bbd74f5f3554fdc9669 | p@chr5:134260455..134260471, - |
| 4.71e-31 | FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_910ffd3942c05bbd74f5f3554fdc9669 | p3@AB464362 |
| 4.71e-31 | FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_910ffd3942c05bbd74f5f3554fdc9669 | p3@AB464362 |
| 6.96e-30 | FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_aa90c102d841f57db9aa3404a89bae60 | p@chr16:65159902..65159909, - |
| 6.96e-30 | FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_aa90c102d841f57db9aa3404a89bae60 | p@chr16:65159902..65159909, - |
| 1.08e-29 | FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_32cbd7685f63ff6b90f31f99a41b7f27 | p@chr5:149537807..149537827, - |
| 1.08e-29 | FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_32cbd7685f63ff6b90f31f99a41b7f27 | p@chr5:149537807..149537827, - |
| 9.09e-27 | FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_cf161d4ac0a88395572323d321217211 | p6@ZIC4 |
| 9.09e-27 | FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_cf161d4ac0a88395572323d321217211 | p6@ZIC4 |
| 1.67e-26 | FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_230a99866e7ac7b76578c1399f067164 | p@chr2:238066183..238066194, - |
| 1.67e-26 | FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_230a99866e7ac7b76578c1399f067164 | p@chr2:238066183..238066194, - |
| 4.08e-26 | FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_4619b8003bc46f94330843c5f1ed240c | p@chr5:40910094..40910097, + |
| 4.08e-26 | FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_4619b8003bc46f94330843c5f1ed240c | p@chr5:40910094..40910097, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_b7e5462fb57fe742c506336778b8b353 | p@chr11:61634768..61634777, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_b7e5462fb57fe742c506336778b8b353 | p@chr11:61634768..61634777, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_21e0c5949f0dc9a76ea01328c8fd7fc8 | p2@ENST00000518934, p2@uc003xti.1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_21e0c5949f0dc9a76ea01328c8fd7fc8 | p2@ENST00000518934, p2@uc003xti.1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_d95e88278fe155f57e2a48f3a6d698af | p@chr6:129504885..129504896, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_d95e88278fe155f57e2a48f3a6d698af | p@chr6:129504885..129504896, - |
| 1.44e-25 | FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_1bbb27f26d8d9990d5f51ce42170a4ed | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_1bbb27f26d8d9990d5f51ce42170a4ed | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr12:279773..279812,+#_1bbb27f26d8d9990d5f51ce42170a4ed | p@chr12:279773..279812, + |
| 1.44e-25 | FFCP PHASE1:Hg19::chr12:279773..279812,+#_1bbb27f26d8d9990d5f51ce42170a4ed | p@chr12:279773..279812, + |
| 2.37e-25 | FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_94d12e7c1e39eee652839951c5dca6aa | p@chr3:147112699..147112713, - |
| 2.37e-25 | FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_94d12e7c1e39eee652839951c5dca6aa | p@chr3:147112699..147112713, - |
| 1.15e-24 | FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_5be985cdbd6f603caf4242d0ceae2c77 | p5@FOXD2 |
| 1.15e-24 | FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_5be985cdbd6f603caf4242d0ceae2c77 | p5@FOXD2 |
| 1.45e-24 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_9404f42acef47c4faabd189e9e10613b | p@chr9:16138889..16138902, - |
| 1.45e-24 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_9404f42acef47c4faabd189e9e10613b | p@chr9:16138889..16138902, - |
| 2.97e-24 | FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_3348c9fd81d9095ed4fd82a2b00d9006 | p6@MYO1B |
| 2.97e-24 | FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_3348c9fd81d9095ed4fd82a2b00d9006 | p6@MYO1B |
| 3.34e-24 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_fa1a37dfe2f182fc1e309f1d96146381 | p@chr3:147088197..147088208, - |
| 3.34e-24 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_fa1a37dfe2f182fc1e309f1d96146381 | p@chr3:147088197..147088208, - |
| 5.35e-24 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_6424b52905895e5cb2ac020fa395da17 | p@chr17:1013251..1013277, - |
| 5.35e-24 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_6424b52905895e5cb2ac020fa395da17 | p@chr17:1013251..1013277, - |
| 1.01e-23 | FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_3baa9efb6ebf8905c93d71f8909f6f85 | p@chr11:60640905..60640919, + |
| 1.01e-23 | FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_3baa9efb6ebf8905c93d71f8909f6f85 | p@chr11:60640905..60640919, + |
| 1.42e-23 | FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_38be61c37076d4d8da497f6cb1eda057 | p49@SEPT9 |
| 1.42e-23 | FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_38be61c37076d4d8da497f6cb1eda057 | p49@SEPT9 |
| 3.49e-23 | FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_0cab0dc15c65ca7f2e8a5f6846566e7d | p30@ST5 |
| 3.49e-23 | FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_0cab0dc15c65ca7f2e8a5f6846566e7d | p30@ST5 |
| 6.84e-23 | FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_5cbb36fec0a3103cf3ed5c9ea99046ed | p2@AB527577, p2@CU693346 |
| 6.84e-23 | FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_5cbb36fec0a3103cf3ed5c9ea99046ed | p2@AB527577, p2@CU693346 |
| 2.06e-22 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_db3f64a4d74c451cbaf430db438dc6ef | p6@CCDC86 |
| 2.06e-22 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_db3f64a4d74c451cbaf430db438dc6ef | p6@CCDC86 |
