CL:0002173: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002173
|name=extraglomerular mesangial cell
|namespace=cell
|def="A cell that is a specialized type of pericyte providing structural support for the capillary...") |
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|name=extraglomerular mesangial cell | |name=extraglomerular mesangial cell | ||
|namespace=cell | |namespace=cell | ||
|def="A cell that is a specialized type of pericyte providing structural support for the capillary loops of kidney. A flat, elongated cell with extensive fine cytoplasmic processes found outside the kidney glomerulus near the macula densa and bound laterally by afferent and efferent arterioles. Being phagocytic, this cell participates in the continuous turnover of the basal lamina by removing its outer portion containing residues of filtration, while the lamina is renewed on its inner surface by the endothelial cells." [GOC:tfm, http:/www.copewithcytokines.de/cope.cgi?key=Lacis | |def="A cell that is a specialized type of pericyte providing structural support for the capillary loops of kidney. A flat, elongated cell with extensive fine cytoplasmic processes found outside the kidney glomerulus near the macula densa and bound laterally by afferent and efferent arterioles. Being phagocytic, this cell participates in the continuous turnover of the basal lamina by removing its outer portion containing residues of filtration, while the lamina is renewed on its inner surface by the endothelial cells." [GOC:tfm, http:/www.copewithcytokines.de/cope.cgi?key=Lacis%20cells, ISBN:0412046911] | ||
|xref=FMA:84143;;KUPO:0001033 | |xref=FMA:84143;;KUPO:0001033 | ||
|is_a=CL:0000650 | |is_a=CL:0000650;;CL:1000618;;CL:1001318 | ||
|synonym="Goormaghtigh cell" EXACT [];;"lacis cell" RELATED [];;"polar cushion cells" EXACT [] | |synonym="Goormaghtigh cell" EXACT [];;"lacis cell" RELATED [];;"polar cushion cells" EXACT [] | ||
|comment= | |comment= | ||
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|located_in= | |located_in= | ||
|part_of=UBERON:0002321 | |part_of=UBERON:0002321 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:40, 15 June 2012
| Name: | extraglomerular mesangial cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A cell that is a specialized type of pericyte providing structural support for the capillary loops of kidney. A flat, elongated cell with extensive fine cytoplasmic processes found outside the kidney glomerulus near the macula densa and bound laterally by afferent and efferent arterioles. Being phagocytic, this cell participates in the continuous turnover of the basal lamina by removing its outer portion containing residues of filtration, while the lamina is renewed on its inner surface by the endothelial cells." [GOC:tfm, http:/www.copewithcytokines.de/cope.cgi?key=Lacis%20cells, ISBN:0412046911] | ||
| Xrefs: |
| ||
| Synonyms: |
"Goormaghtigh cell" EXACT [] "lacis cell" RELATED [] "polar cushion cells" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-08-25T02:20:55Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000650(mesangial cell),CL:1000618(juxtaglomerular complex cell),CL:1001318(renal interstitial pericyte) |
|---|---|
| part_of: | UBERON:0002321(extraglomerular mesangium) |
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Mouse (Mus musculus)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002173 (extraglomerular mesangial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.34e-79 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_3764715f1c4f5f084d92a7bed1c9bf70 | p@chr2:133426030..133426041, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_3764715f1c4f5f084d92a7bed1c9bf70 | p@chr2:133426030..133426041, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_d20190c0992240c3f7a9f66d59c51cc0 | p23@TTC39A |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_d20190c0992240c3f7a9f66d59c51cc0 | p23@TTC39A |
| 2.03e-66 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_cfa55f4caec5d9ebed816597fb402af2 | p@chr2:133426106..133426117, - |
| 2.03e-66 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_cfa55f4caec5d9ebed816597fb402af2 | p@chr2:133426106..133426117, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_96b6e6297e6ec14cc9436e2c231c2ec4 | p8@PAX2 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_96b6e6297e6ec14cc9436e2c231c2ec4 | p@chr10:134535354..134535366, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_96b6e6297e6ec14cc9436e2c231c2ec4 | p8@PAX2 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_96b6e6297e6ec14cc9436e2c231c2ec4 | p@chr10:134535354..134535366, - |
| 3.11e-50 | FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_fd98eb42c371fbab8b08d3c18015e112 | p19@PEMT |
| 3.11e-50 | FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_fd98eb42c371fbab8b08d3c18015e112 | p19@PEMT |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_c5ad551b8f0d4ac6c8ccbd0d266f1ab3 | p10@PAX2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_c5ad551b8f0d4ac6c8ccbd0d266f1ab3 | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_c5ad551b8f0d4ac6c8ccbd0d266f1ab3 | p10@PAX2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_c5ad551b8f0d4ac6c8ccbd0d266f1ab3 | p@chr9:81641483..81641491, - |
| 8.98e-41 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_61247ec7d7864e15f06bc923b303af47 | p@chr17:171082..171101, + |
| 8.98e-41 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_61247ec7d7864e15f06bc923b303af47 | p@chr17:171082..171101, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_5ac1b883d58ea400e18728864e4ec5c2 | p@chr3:172384246..172384250, + |
| 1.1e-40 | FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_5ac1b883d58ea400e18728864e4ec5c2 | p@chr3:172384246..172384250, + |
| 1.64e-40 | FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_b2f05db1f484f5359edd7a6958fdad7f | p@chr1:45087902..45087912, + |
| 1.64e-40 | FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_b2f05db1f484f5359edd7a6958fdad7f | p@chr1:45087902..45087912, + |
| 3.68e-40 | FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_4e283c226c145837d7a2a926519676d0 | p5@PAX2 |
| 3.68e-40 | FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_4e283c226c145837d7a2a926519676d0 | p5@PAX2 |
| 8.2e-37 | FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_253b2935b2fe9c92da92f42b409f7995 | p6@PAX2 |
| 8.2e-37 | FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_253b2935b2fe9c92da92f42b409f7995 | p6@PAX2 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_1002acbcb22f799ea93652679bd8b735 | p3@CRB2 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_1002acbcb22f799ea93652679bd8b735 | p3@CRB2 |
| 6.0e-34 | FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_77243232acb74a58ae4d96d4d2efd7ed | p@chr2:113984760..113984792, + |
| 6.0e-34 | FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_77243232acb74a58ae4d96d4d2efd7ed | p@chr2:113984760..113984792, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_80f3423ad58c25dc7649fe35077314dc | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:858638..858648,+#_80f3423ad58c25dc7649fe35077314dc | p@chr1:858638..858648, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:555661..555679,+#_80f3423ad58c25dc7649fe35077314dc | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_80f3423ad58c25dc7649fe35077314dc | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:555661..555679,+#_80f3423ad58c25dc7649fe35077314dc | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:858638..858648,+#_80f3423ad58c25dc7649fe35077314dc | p@chr1:858638..858648, + |
| 8.39e-34 | FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_aabbe3c334955ece794d51da167ae84f | p13@SPOCK2 |
| 8.39e-34 | FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_aabbe3c334955ece794d51da167ae84f | p13@SPOCK2 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_0a3262603c7aaa933be8756e05e2a298 | p25@PHLDB1 |
| 1.17e-33 | FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_0a3262603c7aaa933be8756e05e2a298 | p25@PHLDB1 |
| 3.35e-32 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_1aa5e2159c20648a7229b31495fea1c3 | p@chr2:693362..693373, + |
| 3.35e-32 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_1aa5e2159c20648a7229b31495fea1c3 | p@chr2:693362..693373, + |
| 2.54e-31 | FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_3a48cde7f9b5f2787d1025a093a480d9 | p1@RIPPLY1 |
| 2.54e-31 | FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_3a48cde7f9b5f2787d1025a093a480d9 | p1@RIPPLY1 |
| 8.05e-30 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_0a006e5812b84d4f9e93df64c904b2a1 | p@chr17:171147..171161, + |
| 8.05e-30 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_0a006e5812b84d4f9e93df64c904b2a1 | p@chr17:171147..171161, + |
| 2.96e-29 | FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_e71cd3b0173ffb16bb2bae91dcc04f96 | p@chr2:165477405..165477418, - |
| 2.96e-29 | FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_e71cd3b0173ffb16bb2bae91dcc04f96 | p@chr2:165477405..165477418, - |
| 4.55e-29 | FFCP PHASE2:Hg19::chr1:874109..874143,+#_d968e1ed08139f94a0b278c3e356d70e | p@chr1:874109..874143, + |
| 4.55e-29 | FFCP PHASE1:Hg19::chr1:874109..874143,+#_d968e1ed08139f94a0b278c3e356d70e | p@chr1:874109..874143, + |
| 1.43e-28 | FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_d101b1847ff4f605f3084591a11b5d60 | p@chr2:113999199..113999214, + |
| 1.43e-28 | FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_d101b1847ff4f605f3084591a11b5d60 | p@chr2:113999199..113999214, + |
| 1.83e-27 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_42e184fdd230dd344833620059f4ed4f | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_42e184fdd230dd344833620059f4ed4f | p@chr16:86604624..86604648, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_42e184fdd230dd344833620059f4ed4f | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_42e184fdd230dd344833620059f4ed4f | p@chr16:86604624..86604648, + |
| 2.74e-27 | FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_6012ed948a39ca5683cb7de0a19ec9a8 | p@chr19:56091499..56091517, - |
| 2.74e-27 | FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_6012ed948a39ca5683cb7de0a19ec9a8 | p@chr19:56091499..56091517, - |
| 2.78e-26 | FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_e0b347159e504a1adc20f612f4aa6a78 | p@chr9:112260040..112260045, + |
| 2.78e-26 | FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_e0b347159e504a1adc20f612f4aa6a78 | p@chr9:112260040..112260045, + |
| 4.63e-26 | FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_52c1ca6a071b83ee28284b9e849b4e21 | p@chr22:30645170..30645182, - |
| 4.63e-26 | FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_52c1ca6a071b83ee28284b9e849b4e21 | p@chr22:30645170..30645182, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_2fa1dde28ec441490f83b2953be374b8 | p@chr8:22419319..22419327, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_2fa1dde28ec441490f83b2953be374b8 | p@chr8:22419319..22419327, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_37a191799dfd6be7f3426889dca2075a | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_37a191799dfd6be7f3426889dca2075a | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_37a191799dfd6be7f3426889dca2075a | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_37a191799dfd6be7f3426889dca2075a | p15@WT1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_37a191799dfd6be7f3426889dca2075a | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_37a191799dfd6be7f3426889dca2075a | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_37a191799dfd6be7f3426889dca2075a | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_37a191799dfd6be7f3426889dca2075a | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_37a191799dfd6be7f3426889dca2075a | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_37a191799dfd6be7f3426889dca2075a | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_37a191799dfd6be7f3426889dca2075a | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_37a191799dfd6be7f3426889dca2075a | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_37a191799dfd6be7f3426889dca2075a | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_37a191799dfd6be7f3426889dca2075a | p14@PAX2 |
| 2.37e-25 | FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_c3b7d8fa0fe55052f432cb712e00ecca | p1@ENST00000523364, p1@uc010kux.1 |
| 2.37e-25 | FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_c3b7d8fa0fe55052f432cb712e00ecca | p1@ENST00000523364, p1@uc010kux.1 |
| 4.38e-25 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_7ae9e39f8b1fd46f4e6b10450b3d19bc | p16@HOXA10 |
| 4.38e-25 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_7ae9e39f8b1fd46f4e6b10450b3d19bc | p16@HOXA10 |
| 4.43e-25 | FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_afb251e2fb88ff012a0ed30a437a6d13 | p6@MTMR11 |
| 4.43e-25 | FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_afb251e2fb88ff012a0ed30a437a6d13 | p6@MTMR11 |
| 7.09e-25 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_d50a1efd619edc1342dddb1de4b93879 | p4@PAX2 |
| 7.09e-25 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_d50a1efd619edc1342dddb1de4b93879 | p4@PAX2 |
| 3.76e-24 | FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_9be0a028b1b2ca22e54ac0d9251769e3 | p@chr1:46797583..46797614, - |
| 3.76e-24 | FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_9be0a028b1b2ca22e54ac0d9251769e3 | p@chr1:46797583..46797614, - |
| 7.62e-24 | FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_c296944bb2e68a1665946c710d0f8b82 | p@chr6:94129519..94129544, + |
| 7.62e-24 | FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_c296944bb2e68a1665946c710d0f8b82 | p@chr6:94129519..94129544, + |
| 8.02e-24 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_081e9097c9db1dc1042637950ae774f0 | p@chr2:693380..693398, + |
| 8.02e-24 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_081e9097c9db1dc1042637950ae774f0 | p@chr2:693380..693398, + |
| 8.98e-24 | FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_1ae11a3ac6c07c2a594ab8abd09b4eb3 | p@chr2:133426077..133426103, - |
| 8.98e-24 | FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_1ae11a3ac6c07c2a594ab8abd09b4eb3 | p@chr2:133426077..133426103, - |
| 1.99e-23 | FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_49a80d3123879651e3de7b23765ae4ae | p5@WT1-AS |
| 1.99e-23 | FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_49a80d3123879651e3de7b23765ae4ae | p5@WT1-AS |
| 4.37e-23 | FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_4c00a9963a761cbe1ecb96de86696835 | p@chr2:176968471..176968476, - |
| 4.37e-23 | FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_4c00a9963a761cbe1ecb96de86696835 | p@chr2:176968471..176968476, - |
| 4.89e-23 | FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_620604ff6d6f0e9bb31bc43d4c587884 | p1@ENST00000469884 |
| 4.89e-23 | FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_620604ff6d6f0e9bb31bc43d4c587884 | p1@ENST00000469884 |
