UBERON:0000077: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 5: | Line 5: | ||
|def="An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm] | |def="An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm] | ||
|xref= | |xref= | ||
|is_a= | |is_a=UBERON:0004119;;UBERON:0004120 | ||
|synonym= | |synonym= | ||
|comment=Grouping term for query purposes. | |comment=Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=grouping_class | |subset=grouping_class | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 16:56, 26 June 2012
| Name: | mixed endoderm/mesoderm-derived structure |
|---|---|
| Definition: | "An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm] |
| Comments: | Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004119(endoderm-derived structure),UBERON:0004120(mesoderm-derived structure) |
|---|
Children
| is a: | UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001040 (yolk sac),UBERON:0001987 (placenta),UBERON:0002012 (pulmonary artery),UBERON:0002061 (truncus arteriosus),UBERON:0002370 (thymus),UBERON:0004340 (allantois),UBERON:0004363 (pharyngeal arch artery),UBERON:0004645 (urinary bladder urothelium),UBERON:0005432 (aortic sac),UBERON:0015796 (liver blood vessel) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10091-102C1
- 10092-102C2
- 10095-102C5
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10091-102C1
- 10092-102C2
- 10095-102C5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000077 (mixed endoderm/mesoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.33e-44 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_28422ec49ca5d60fcc8c4373a875d97f | p4@uc009bpa.1 |
| 5.33e-44 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_28422ec49ca5d60fcc8c4373a875d97f | p4@uc009bpa.1 |
| 1.44e-43 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_06d7e97d8ffc5823b291c8e541e79a6b | p8@uc009bpa.1 |
| 1.44e-43 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_06d7e97d8ffc5823b291c8e541e79a6b | p8@uc009bpa.1 |
| 1.44e-43 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_06d7e97d8ffc5823b291c8e541e79a6b | p@chr9:44807434..44807445, - |
| 1.44e-43 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_06d7e97d8ffc5823b291c8e541e79a6b | p@chr9:44807434..44807445, - |
| 4.36e-42 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_169a47f81301cc601bfe3be3aec04cc8 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 4.36e-42 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_169a47f81301cc601bfe3be3aec04cc8 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 2.13e-41 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_7ecabb3fc58e239f6d97067c62778595 | p@chr12:108361918..108361930, - |
| 2.13e-41 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_7ecabb3fc58e239f6d97067c62778595 | p@chr12:108361918..108361930, - |
| 2.13e-41 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_7ecabb3fc58e239f6d97067c62778595 | p@chr6:41491752..41491776, - |
| 2.13e-41 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_7ecabb3fc58e239f6d97067c62778595 | p@chr6:41491752..41491776, - |
| 2.35e-40 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_c78bd5f3f36c50cb4d42527bafd5cf96 | p2@ENSMUST00000103283 |
| 2.35e-40 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_c78bd5f3f36c50cb4d42527bafd5cf96 | p2@ENSMUST00000103283 |
| 2.69e-40 | FFCP PHASE1:Mm9::chr9:14708196..14708216,-#_6f00ad1daea7df9bbecc46fd93147dbe | p2@Folr4 |
| 2.69e-40 | FFCP PHASE2:Mm9::chr9:14708196..14708216,-#_6f00ad1daea7df9bbecc46fd93147dbe | p2@Folr4 |
| 2.73e-40 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_f252f800a730b35a3dd00bd69a799436 | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 2.73e-40 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_f252f800a730b35a3dd00bd69a799436 | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 1.43e-39 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_e23b193deadde49f0deb4f78d5f7e8aa | p@chr6:41494001..41494028, + |
| 1.43e-39 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_e23b193deadde49f0deb4f78d5f7e8aa | p@chr6:41494001..41494028, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_1c06ed13b832b4470181f2fe07c57405 | p11@Prkcq |
| 2.66e-39 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_1c06ed13b832b4470181f2fe07c57405 | p11@Prkcq |
| 3.03e-39 | FFCP PHASE2:Mm9::chr9:44807068..44807099,-#_8115f44ac16194142c1c12519f95e838 | p@chr9:44807068..44807099, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr9:44807068..44807099,-#_8115f44ac16194142c1c12519f95e838 | p@chr9:44807068..44807099, - |
| 3.37e-39 | FFCP PHASE1:Mm9::chr6:41128379..41128400,+#_a119b0d03dc169781dbe5724f276424a | p2@uc009boj.1 |
| 3.37e-39 | FFCP PHASE2:Mm9::chr6:41128379..41128400,+#_a119b0d03dc169781dbe5724f276424a | p2@uc009boj.1 |
| 3.49e-39 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_c2816eca89619d2e259786e65e02150b | p@chr9:44809185..44809215, - |
| 3.49e-39 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_c2816eca89619d2e259786e65e02150b | p@chr9:44809185..44809215, - |
| 4.06e-39 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_f8536971c967d2f8df76647ea26d2d27 | p@chr14:54791784..54791787, + |
| 4.06e-39 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_f8536971c967d2f8df76647ea26d2d27 | p@chr14:54791784..54791787, + |
| 5.93e-39 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_9c6a0fcf5b42c4caa0eb3833c9fab21a | p1@ENSMUST00000103263 |
| 5.93e-39 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_9c6a0fcf5b42c4caa0eb3833c9fab21a | p1@ENSMUST00000103263 |
| 7.78e-39 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_e8f2764ed9ef855efa094a29279c477c | p@chr9:44793518..44793537, + |
| 7.78e-39 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_e8f2764ed9ef855efa094a29279c477c | p@chr9:44793518..44793537, + |
| 9.21e-39 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_7cfccfc1201fa7e9ff6d9ebf697153a1 | p@chr6:41071548..41071565, + |
| 9.21e-39 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_7cfccfc1201fa7e9ff6d9ebf697153a1 | p@chr6:41071548..41071565, + |
| 1.25e-38 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_c9d7ceeb4123d94b959ac9eabf10b985 | p5@Themis |
| 1.25e-38 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_c9d7ceeb4123d94b959ac9eabf10b985 | p5@Themis |
| 1.38e-38 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_d57558222321d93cc9def16324ad66f3 | p5@uc009bpa.1 |
| 1.38e-38 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_d57558222321d93cc9def16324ad66f3 | p5@uc009bpa.1 |
| 2.04e-38 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_e98fd1138d42aeb726dbffc63d11adc5 | p2@uc009bnp.1, p2@uc012eki.1 |
| 2.04e-38 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_e98fd1138d42aeb726dbffc63d11adc5 | p2@uc009bnp.1, p2@uc012eki.1 |
| 3.45e-38 | FFCP PHASE1:Mm9::chr6:41493353..41493378,+#_7da7542c1b43bcf5c9cd752f22202a75 | p1@ENSMUST00000103296, p1@uc009bpv.1 |
| 3.45e-38 | FFCP PHASE2:Mm9::chr6:41493353..41493378,+#_7da7542c1b43bcf5c9cd752f22202a75 | p1@ENSMUST00000103296, p1@uc009bpv.1 |
| 8.18e-38 | FFCP PHASE2:Mm9::chr15:66633167..66633182,-#_90f8c26942144f2f461051e6d4c75724 | p6@Sla |
| 8.18e-38 | FFCP PHASE1:Mm9::chr15:66633167..66633182,-#_90f8c26942144f2f461051e6d4c75724 | p6@Sla |
| 1.04e-37 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_f29036d9d958a66f4f4d03ae941a24fd | p5@Tcf7 |
| 1.04e-37 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_f29036d9d958a66f4f4d03ae941a24fd | p5@Tcf7 |
| 1.18e-37 | FFCP PHASE1:Mm9::chr6:41493580..41493619,+#_4fff000cebd91204839ba1b99ed692e8 | p1@ENSMUST00000169595 |
| 1.18e-37 | FFCP PHASE2:Mm9::chr6:41493580..41493619,+#_4fff000cebd91204839ba1b99ed692e8 | p1@ENSMUST00000169595 |
| 1.55e-37 | FFCP PHASE2:Mm9::chr6:41491889..41491902,+#_4aa54d5e9856d9a07a6527cf791d77b7 | p2@uc009bpo.1, p2@uc009bpp.1 |
| 1.55e-37 | FFCP PHASE1:Mm9::chr6:41491889..41491902,+#_4aa54d5e9856d9a07a6527cf791d77b7 | p2@uc009bpo.1, p2@uc009bpp.1 |
| 1.61e-37 | FFCP PHASE1:Mm9::chr6:41493624..41493641,+#_5528d714977518a868bff80f9aaf4cd9 | p2@ENSMUST00000169595 |
| 1.61e-37 | FFCP PHASE2:Mm9::chr6:41493624..41493641,+#_5528d714977518a868bff80f9aaf4cd9 | p2@ENSMUST00000169595 |
| 2.32e-37 | FFCP PHASE2:Mm9::chr7:25692325..25692345,+#_8c726917402d3d52cfe76a7530568b66 | p6@Arhgef1 |
| 2.32e-37 | FFCP PHASE1:Mm9::chr7:25692325..25692345,+#_8c726917402d3d52cfe76a7530568b66 | p6@Arhgef1 |
| 2.53e-37 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_d8b6c99d8f1806d30af4babb215bce37 | p@chr14:61328148..61328173, + |
| 2.53e-37 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_d8b6c99d8f1806d30af4babb215bce37 | p@chr14:61328148..61328173, + |
| 4.04e-37 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_43ec01e8df16fb7deea699276d186efb | p1@uc012ekr.1 |
| 4.04e-37 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_43ec01e8df16fb7deea699276d186efb | p1@uc012ekr.1 |
| 4.71e-37 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_71c4377ca76ba0102fa72ea30786f4c5 | p2@1810009J06Rik |
| 4.71e-37 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_71c4377ca76ba0102fa72ea30786f4c5 | p2@1810009J06Rik |
| 5.24e-37 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_7d32931e24460560543663ecf595b9fc | p2@uc009bpa.1 |
| 5.24e-37 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_7d32931e24460560543663ecf595b9fc | p2@uc009bpa.1 |
| 5.75e-37 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_2f3c27c5e6953eda0a8f329dde03d2a9 | p2@Sh2d1a |
| 5.75e-37 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_2f3c27c5e6953eda0a8f329dde03d2a9 | p2@Sh2d1a |
| 6.09e-37 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_f35499633b722a2be75ffadf208cbb94 | p1@uc012ekk.1 |
| 6.09e-37 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_f35499633b722a2be75ffadf208cbb94 | p1@uc012ekk.1 |
| 6.75e-37 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_6c7ee21e7c4dbe830a93d8108fb56e87 | p1@ENSMUST00000103265 |
| 6.75e-37 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_6c7ee21e7c4dbe830a93d8108fb56e87 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 6.75e-37 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_6c7ee21e7c4dbe830a93d8108fb56e87 | p1@ENSMUST00000103265 |
| 6.75e-37 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_6c7ee21e7c4dbe830a93d8108fb56e87 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 8.39e-37 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_b0ac31ff953ecbcf6d878571abad8206 | p@chr7:133512043..133512060, - |
| 8.39e-37 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_b0ac31ff953ecbcf6d878571abad8206 | p@chr7:133512043..133512060, - |
| 1.29e-36 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_5af9edfdf8160133a82340eda06dbd64 | p5@Trat1 |
| 1.29e-36 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_5af9edfdf8160133a82340eda06dbd64 | p5@Trat1 |
| 1.31e-36 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_ffd907ba3e30e030bd8072693d76fe2c | p2@Gm5409 |
| 1.31e-36 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_ffd907ba3e30e030bd8072693d76fe2c | p2@Gm5409 |
| 1.86e-36 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_172416a1badf68afd62b5049e7036543 | p@chr14:54794540..54794554, + |
| 1.86e-36 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_172416a1badf68afd62b5049e7036543 | p@chr14:54794540..54794554, + |
| 1.87e-36 | FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_cbd79083f826868c6560f619ed656221 | p@chr6:41489240..41489252, + |
| 1.87e-36 | FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_cbd79083f826868c6560f619ed656221 | p@chr6:41489240..41489252, + |
| 1.97e-36 | FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_0f36e2a473121063868f598ed7636b96 | p@chr6:41491801..41491815, - |
| 1.97e-36 | FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_0f36e2a473121063868f598ed7636b96 | p@chr6:41491801..41491815, - |
| 1.97e-36 | FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_0f36e2a473121063868f598ed7636b96 | p@chr14:54496363..54496388, + |
| 1.97e-36 | FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_0f36e2a473121063868f598ed7636b96 | p@chr14:54496363..54496388, + |
| 2.19e-36 | FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_41d086e622f1dd9af49273104cbe6b54 | p@chr6:41494376..41494389, - |
| 2.19e-36 | FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_41d086e622f1dd9af49273104cbe6b54 | p1@ENSMUST00000103282 |
| 2.19e-36 | FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_41d086e622f1dd9af49273104cbe6b54 | p@chr6:41494376..41494389, - |
| 2.19e-36 | FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_41d086e622f1dd9af49273104cbe6b54 | p1@ENSMUST00000103282 |
| 2.25e-36 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_84d1b7ce971b6b5cefe42d54b3e84e15 | p6@uc009bpa.1 |
| 2.25e-36 | FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_84d1b7ce971b6b5cefe42d54b3e84e15 | p6@uc009bpa.1 |
| 2.25e-36 | FFCP PHASE1:Mm9::chr16:10690320..10690361,+#_84d1b7ce971b6b5cefe42d54b3e84e15 | p@chr16:10690320..10690361, + |
| 2.25e-36 | FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_84d1b7ce971b6b5cefe42d54b3e84e15 | p@chr4:125978325..125978339, - |
| 2.25e-36 | FFCP PHASE2:Mm9::chr16:10690320..10690361,+#_84d1b7ce971b6b5cefe42d54b3e84e15 | p@chr16:10690320..10690361, + |
| 2.25e-36 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_84d1b7ce971b6b5cefe42d54b3e84e15 | p@chr4:125978325..125978339, - |
| 2.25e-36 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_84d1b7ce971b6b5cefe42d54b3e84e15 | p8@Lat |
| 2.25e-36 | FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_84d1b7ce971b6b5cefe42d54b3e84e15 | p8@Lat |
| 2.33e-36 | FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_c315a20539f13a4e5143640a3b09e5af | p7@Lat |
| 2.33e-36 | FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_c315a20539f13a4e5143640a3b09e5af | p7@Lat |
