UBERON:0001301: Difference between revisions
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|def="A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis] | |def="A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis] | ||
|xref=BTO:0000408;;EFO:0000982;;EMAPA:19290;;EV:0100103;;FMA:18255;;GAID:397;;galen:Epididymis;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg;;MA:0000397;;MAT:0000130;;MESH:A.05.360.444.849.286;;MIAA:0000130;;ncithesaurus:Epididymis;;SCTID:181432000;;VHOG:0001265 | |xref=BTO:0000408;;EFO:0000982;;EMAPA:19290;;EV:0100103;;FMA:18255;;GAID:397;;galen:Epididymis;;http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg;;MA:0000397;;MAT:0000130;;MESH:A.05.360.444.849.286;;MIAA:0000130;;ncithesaurus:Epididymis;;SCTID:181432000;;VHOG:0001265 | ||
|is_a= | |is_a=UBERON:0005904 | ||
|synonym="epididymus" EXACT [] | |synonym="epididymus" EXACT [] | ||
|comment=Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells. | |comment=Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells. | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 16:59, 26 June 2012
Name: | epididymis | ||
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Definition: | "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis] | ||
Xrefs: |
| ||
Synonyms: | "epididymus" EXACT [] | ||
Comments: | Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells. | ||
Alt_id: | UBERON:FMA_18255-MA_0000397-MIAA_0000130 | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0005904(duct of male reproductive system) |
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Children
derives from: | FF:0011289 (epididymis- adult sample),FF:0011471 (mouse epididymis and seminiferous tubule- neonate N30 sample),FF:0011506 (mouse epididymis and seminiferous tubule- neonate N00 sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10197-103E8 (epididymis, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 58-23B2 (epididymis, adult)
Mouse (Mus musculus)
- 10197-103E8 (epididymis, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 58-23B2 (epididymis, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001301 (epididymis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
5.42e-195 | FFCP PHASE2:Hg19::chr1:4169023..4169028,-#_821503cbafefcb9933eb6edc6a929677 | p@chr1:4169023..4169028, - |
5.42e-195 | FFCP PHASE1:Hg19::chr6:35744420..35744448,-#_821503cbafefcb9933eb6edc6a929677 | p@chr6:35744420..35744448, - |
5.42e-195 | FFCP PHASE2:Hg19::chr4:153167929..153167932,-#_821503cbafefcb9933eb6edc6a929677 | p@chr4:153167929..153167932, - |
5.42e-195 | FFCP PHASE1:Hg19::chrX:152082921..152082928,+#_821503cbafefcb9933eb6edc6a929677 | p9@ZNF185 |
5.42e-195 | FFCP PHASE1:Hg19::chr14:21238304..21238345,+#_821503cbafefcb9933eb6edc6a929677 | p@chr14:21238304..21238345, + |
5.42e-195 | FFCP PHASE1:Hg19::chr6:49931873..49931879,-#_821503cbafefcb9933eb6edc6a929677 | p1@DEFB114 |
5.42e-195 | FFCP PHASE1:Hg19::chr8:142335065..142335096,+#_821503cbafefcb9933eb6edc6a929677 | p@chr8:142335065..142335096, + |
5.42e-195 | FFCP PHASE1:Hg19::chr11:71578488..71578491,+#_821503cbafefcb9933eb6edc6a929677 | p@chr11:71578488..71578491, + |
5.42e-195 | FFCP PHASE2:Hg19::chr9:139652520..139652524,-#_821503cbafefcb9933eb6edc6a929677 | p12@LCN8 |
5.42e-195 | FFCP PHASE2:Hg19::chrX:40159589..40159601,-#_821503cbafefcb9933eb6edc6a929677 | p@chrX:40159589..40159601, - |
5.42e-195 | FFCP PHASE2:Hg19::chr7:155871488..155871492,+#_821503cbafefcb9933eb6edc6a929677 | p@chr7:155871488..155871492, + |
5.42e-195 | FFCP PHASE1:Hg19::chr14:21058820..21058830,+#_821503cbafefcb9933eb6edc6a929677 | p1@ENST00000554993, p1@uc001vxu.1 |
5.42e-195 | FFCP PHASE2:Hg19::chr8:132302164..132302165,+#_821503cbafefcb9933eb6edc6a929677 | p@chr8:132302164..132302165, + |
5.42e-195 | FFCP PHASE1:Hg19::chr16:56385193..56385202,+#_821503cbafefcb9933eb6edc6a929677 | p@chr16:56385193..56385202, + |
5.42e-195 | FFCP PHASE2:Hg19::chrX:100985204..100985241,+#_821503cbafefcb9933eb6edc6a929677 | p@chrX:100985204..100985241, + |
5.42e-195 | FFCP PHASE1:Hg19::chr20:44299411..44299420,-#_821503cbafefcb9933eb6edc6a929677 | p@chr20:44299411..44299420, - |
5.42e-195 | FFCP PHASE2:Hg19::chr9:139141139..139141172,+#_821503cbafefcb9933eb6edc6a929677 | p@chr9:139141139..139141172, + |
5.42e-195 | FFCP PHASE2:Hg19::chr8:26292001..26292021,-#_821503cbafefcb9933eb6edc6a929677 | p1@ENST00000515686 |
5.42e-195 | FFCP PHASE1:Hg19::chr10:64653994..64653999,-#_821503cbafefcb9933eb6edc6a929677 | p@chr10:64653994..64653999, - |
5.42e-195 | FFCP PHASE2:Hg19::chrX:15887310..15887344,-#_821503cbafefcb9933eb6edc6a929677 | p@chrX:15887310..15887344, - |
5.42e-195 | FFCP PHASE1:Hg19::chr20:44207942..44207956,-#_821503cbafefcb9933eb6edc6a929677 | p3@WFDC8 |
5.42e-195 | FFCP PHASE1:Hg19::chr11:128732046..128732054,+#_821503cbafefcb9933eb6edc6a929677 | p@chr11:128732046..128732054, + |
5.42e-195 | FFCP PHASE2:Hg19::chr10:102502448..102502455,+#_821503cbafefcb9933eb6edc6a929677 | p@chr10:102502448..102502455, + |
5.42e-195 | FFCP PHASE1:Hg19::chr19:18874785..18874809,-#_821503cbafefcb9933eb6edc6a929677 | p@chr19:18874785..18874809, - |
5.42e-195 | FFCP PHASE2:Hg19::chr20:209951..209962,+#_821503cbafefcb9933eb6edc6a929677 | p@chr20:209951..209962, + |
5.42e-195 | FFCP PHASE2:Hg19::chr4:57524061..57524074,-#_821503cbafefcb9933eb6edc6a929677 | p17@HOPX |
5.42e-195 | FFCP PHASE2:Hg19::chr2:10341486..10341491,-#_821503cbafefcb9933eb6edc6a929677 | p@chr2:10341486..10341491, - |
5.42e-195 | FFCP PHASE1:Hg19::chr19:56784204..56784211,+#_821503cbafefcb9933eb6edc6a929677 | p@chr19:56784204..56784211, + |
5.42e-195 | FFCP PHASE1:Hg19::chr9:139652568..139652569,-#_821503cbafefcb9933eb6edc6a929677 | p17@LCN8 |
5.42e-195 | FFCP PHASE2:Hg19::chr12:6750422..6750429,-#_821503cbafefcb9933eb6edc6a929677 | p15@LPAR5 |
5.42e-195 | FFCP PHASE2:Hg19::chr4:88161653..88161660,-#_821503cbafefcb9933eb6edc6a929677 | p2@ENST00000506274 |
5.42e-195 | FFCP PHASE1:Hg19::chr14:21502902..21502916,-#_821503cbafefcb9933eb6edc6a929677 | p1@RNASE13 |
5.42e-195 | FFCP PHASE2:Hg19::chr20:44207968..44207975,-#_821503cbafefcb9933eb6edc6a929677 | p5@WFDC8 |
5.42e-195 | FFCP PHASE1:Hg19::chr4:153486478..153486500,-#_821503cbafefcb9933eb6edc6a929677 | p@chr4:153486478..153486500, - |
5.42e-195 | FFCP PHASE1:Hg19::chr10:119878381..119878386,-#_821503cbafefcb9933eb6edc6a929677 | p@chr10:119878381..119878386, - |
5.42e-195 | FFCP PHASE1:Hg19::chr20:55865344..55865346,-#_821503cbafefcb9933eb6edc6a929677 | p@chr20:55865344..55865346, - |
5.42e-195 | FFCP PHASE1:Hg19::chr1:209616877..209616883,-#_821503cbafefcb9933eb6edc6a929677 | p@chr1:209616877..209616883, - |
5.42e-195 | FFCP PHASE2:Hg19::chr1:182369795..182369805,-#_821503cbafefcb9933eb6edc6a929677 | p2@TEDDM1 |
5.42e-195 | FFCP PHASE2:Hg19::chr10:127467889..127467896,-#_821503cbafefcb9933eb6edc6a929677 | p@chr10:127467889..127467896, - |
5.42e-195 | FFCP PHASE2:Hg19::chr16:56385193..56385202,+#_821503cbafefcb9933eb6edc6a929677 | p@chr16:56385193..56385202, + |
5.42e-195 | FFCP PHASE2:Hg19::chr14:21502129..21502134,-#_821503cbafefcb9933eb6edc6a929677 | p5@RNASE13 |
5.42e-195 | FFCP PHASE1:Hg19::chr10:77806932..77806938,+#_821503cbafefcb9933eb6edc6a929677 | p@chr10:77806932..77806938, + |
5.42e-195 | FFCP PHASE2:Hg19::chr5:59668691..59668699,-#_821503cbafefcb9933eb6edc6a929677 | p114@PDE4D |
5.42e-195 | FFCP PHASE1:Hg19::chr3:48264969..48264974,+#_821503cbafefcb9933eb6edc6a929677 | p5@CAMP |
5.42e-195 | FFCP PHASE2:Hg19::chr11:71578488..71578491,+#_821503cbafefcb9933eb6edc6a929677 | p@chr11:71578488..71578491, + |
5.42e-195 | FFCP PHASE1:Hg19::chr20:23433471..23433480,-#_821503cbafefcb9933eb6edc6a929677 | p2@CST11 |
5.42e-195 | FFCP PHASE1:Hg19::chr1:27277269..27277282,-#_821503cbafefcb9933eb6edc6a929677 | p@chr1:27277269..27277282, - |
5.42e-195 | FFCP PHASE2:Hg19::chr20:29994007..29994020,-#_821503cbafefcb9933eb6edc6a929677 | p1@DEFB121 |
5.42e-195 | FFCP PHASE2:Hg19::chr10:119878409..119878417,-#_821503cbafefcb9933eb6edc6a929677 | p@chr10:119878409..119878417, - |
5.42e-195 | FFCP PHASE1:Hg19::chr14:21055821..21055829,-#_821503cbafefcb9933eb6edc6a929677 | p3@RNASE11 |
5.42e-195 | FFCP PHASE2:Hg19::chr2:137045521..137045528,+#_821503cbafefcb9933eb6edc6a929677 | p@chr2:137045521..137045528, + |
5.42e-195 | FFCP PHASE1:Hg19::chr8:11839760..11839774,+#_821503cbafefcb9933eb6edc6a929677 | p1@DEFB135 |
5.42e-195 | FFCP PHASE2:Hg19::chrX:19031911..19031914,-#_821503cbafefcb9933eb6edc6a929677 | p@chrX:19031911..19031914, - |
5.42e-195 | FFCP PHASE1:Hg19::chr20:44258401..44258402,+#_821503cbafefcb9933eb6edc6a929677 | p4@WFDC10A |
5.42e-195 | FFCP PHASE2:Hg19::chr20:23433502..23433514,-#_821503cbafefcb9933eb6edc6a929677 | p1@CST11 |
5.42e-195 | FFCP PHASE1:Hg19::chr8:24314164..24314166,+#_821503cbafefcb9933eb6edc6a929677 | p@chr8:24314164..24314166, + |
5.42e-195 | FFCP PHASE1:Hg19::chr6:28493753..28493768,+#_821503cbafefcb9933eb6edc6a929677 | p1@GPX5 |
5.42e-195 | FFCP PHASE1:Hg19::chr1:4169023..4169028,-#_821503cbafefcb9933eb6edc6a929677 | p@chr1:4169023..4169028, - |
5.42e-195 | FFCP PHASE2:Hg19::chr14:21053277..21053291,-#_821503cbafefcb9933eb6edc6a929677 | p@chr14:21053277..21053291, - |
5.42e-195 | FFCP PHASE1:Hg19::chr15:25165648..25165652,+#_821503cbafefcb9933eb6edc6a929677 | p@chr15:25165648..25165652, + |
5.42e-195 | FFCP PHASE1:Hg19::chr11:61280976..61280983,-#_821503cbafefcb9933eb6edc6a929677 | p@chr11:61280976..61280983, - |
5.42e-195 | FFCP PHASE1:Hg19::chr2:97578539..97578563,-#_821503cbafefcb9933eb6edc6a929677 | p@chr2:97578539..97578563, - |
5.42e-195 | FFCP PHASE2:Hg19::chr11:62009104..62009124,+#_821503cbafefcb9933eb6edc6a929677 | p@chr11:62009104..62009124, + |
5.42e-195 | FFCP PHASE1:Hg19::chrX:15525470..15525483,+#_821503cbafefcb9933eb6edc6a929677 | p5@BMX |
5.42e-195 | FFCP PHASE1:Hg19::chr6:50927244..50927252,+#_821503cbafefcb9933eb6edc6a929677 | p@chr6:50927244..50927252, + |
5.42e-195 | FFCP PHASE2:Hg19::chr11:64323569..64323574,+#_821503cbafefcb9933eb6edc6a929677 | p7@SLC22A11 |
5.42e-195 | FFCP PHASE2:Hg19::chr20:185333..185342,+#_821503cbafefcb9933eb6edc6a929677 | p@chr20:185333..185342, + |
5.42e-195 | FFCP PHASE2:Hg19::chr10:77806947..77806952,+#_821503cbafefcb9933eb6edc6a929677 | p@chr10:77806947..77806952, + |
5.42e-195 | FFCP PHASE1:Hg19::chr17:48456180..48456192,+#_821503cbafefcb9933eb6edc6a929677 | p6@EME1 |
5.42e-195 | FFCP PHASE1:Hg19::chrX:23684731..23684738,-#_821503cbafefcb9933eb6edc6a929677 | p@chrX:23684731..23684738, - |
5.42e-195 | FFCP PHASE1:Hg19::chr11:7727980..7727990,-#_821503cbafefcb9933eb6edc6a929677 | p3@OVCH2 |
5.42e-195 | FFCP PHASE1:Hg19::chr9:139652508..139652517,-#_821503cbafefcb9933eb6edc6a929677 | p3@LCN8 |
5.42e-195 | FFCP PHASE2:Hg19::chr1:4169565..4169571,+#_821503cbafefcb9933eb6edc6a929677 | p@chr1:4169565..4169571, + |
5.42e-195 | FFCP PHASE2:Hg19::chr15:25165629..25165640,+#_821503cbafefcb9933eb6edc6a929677 | p@chr15:25165629..25165640, + |
5.42e-195 | FFCP PHASE1:Hg19::chr10:102502448..102502455,+#_821503cbafefcb9933eb6edc6a929677 | p@chr10:102502448..102502455, + |
5.42e-195 | FFCP PHASE1:Hg19::chr7:20655274..20655279,+#_821503cbafefcb9933eb6edc6a929677 | p8@ABCB5 |
5.42e-195 | FFCP PHASE1:Hg19::chr4:153167893..153167900,-#_821503cbafefcb9933eb6edc6a929677 | p@chr4:153167893..153167900, - |
5.42e-195 | FFCP PHASE2:Hg19::chr8:144161715..144161725,+#_821503cbafefcb9933eb6edc6a929677 | p@chr8:144161715..144161725, + |
5.42e-195 | FFCP PHASE2:Hg19::chr7:43843249..43843256,+#_821503cbafefcb9933eb6edc6a929677 | p@chr7:43843249..43843256, + |
5.42e-195 | FFCP PHASE2:Hg19::chr17:48456180..48456192,+#_821503cbafefcb9933eb6edc6a929677 | p6@EME1 |
5.42e-195 | FFCP PHASE2:Hg19::chr11:26586938..26586948,-#_821503cbafefcb9933eb6edc6a929677 | p9@MUC15 |
5.42e-195 | FFCP PHASE2:Hg19::chr9:139652534..139652543,-#_821503cbafefcb9933eb6edc6a929677 | p4@LCN8 |
5.42e-195 | FFCP PHASE1:Hg19::chr2:10341486..10341491,-#_821503cbafefcb9933eb6edc6a929677 | p@chr2:10341486..10341491, - |
5.42e-195 | FFCP PHASE2:Hg19::chr6:49815946..49815952,-#_821503cbafefcb9933eb6edc6a929677 | p@chr6:49815946..49815952, - |
5.42e-195 | FFCP PHASE1:Hg19::chr11:125613178..125613226,-#_821503cbafefcb9933eb6edc6a929677 | p@chr11:125613178..125613226, - |
5.42e-195 | FFCP PHASE2:Hg19::chr14:21238304..21238345,+#_821503cbafefcb9933eb6edc6a929677 | p@chr14:21238304..21238345, + |
5.42e-195 | FFCP PHASE2:Hg19::chr9:116997736..116997752,+#_821503cbafefcb9933eb6edc6a929677 | p@chr9:116997736..116997752, + |
5.42e-195 | FFCP PHASE1:Hg19::chr17:42015069..42015072,+#_821503cbafefcb9933eb6edc6a929677 | p@chr17:42015069..42015072, + |
5.42e-195 | FFCP PHASE1:Hg19::chr20:209951..209962,+#_821503cbafefcb9933eb6edc6a929677 | p@chr20:209951..209962, + |
5.42e-195 | FFCP PHASE2:Hg19::chr6:106332801..106332809,+#_821503cbafefcb9933eb6edc6a929677 | p@chr6:106332801..106332809, + |
5.42e-195 | FFCP PHASE2:Hg19::chr10:119590679..119590687,-#_821503cbafefcb9933eb6edc6a929677 | p@chr10:119590679..119590687, - |
5.42e-195 | FFCP PHASE2:Hg19::chr14:21058820..21058830,+#_821503cbafefcb9933eb6edc6a929677 | p1@ENST00000554993, p1@uc001vxu.1 |
5.42e-195 | FFCP PHASE2:Hg19::chr9:93975437..93975444,-#_821503cbafefcb9933eb6edc6a929677 | p@chr9:93975437..93975444, - |
5.42e-195 | FFCP PHASE1:Hg19::chr20:44207968..44207975,-#_821503cbafefcb9933eb6edc6a929677 | p5@WFDC8 |
5.42e-195 | FFCP PHASE1:Hg19::chr15:63383501..63383508,+#_821503cbafefcb9933eb6edc6a929677 | p@chr15:63383501..63383508, + |
5.42e-195 | FFCP PHASE1:Hg19::chr4:170834002..170834005,+#_821503cbafefcb9933eb6edc6a929677 | p@chr4:170834002..170834005, + |
5.42e-195 | FFCP PHASE2:Hg19::chr17:42015069..42015072,+#_821503cbafefcb9933eb6edc6a929677 | p@chr17:42015069..42015072, + |
5.42e-195 | FFCP PHASE1:Hg19::chr2:183567799..183567806,+#_821503cbafefcb9933eb6edc6a929677 | p@chr2:183567799..183567806, + |
5.42e-195 | FFCP PHASE2:Hg19::chr9:136570132..136570169,-#_821503cbafefcb9933eb6edc6a929677 | p@chr9:136570132..136570169, - |
5.42e-195 | FFCP PHASE2:Hg19::chr6:28493654..28493661,+#_821503cbafefcb9933eb6edc6a929677 | p2@GPX5 |