Personal tools

UBERON:0001785: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|name=cranial nerve
|name=cranial nerve
|namespace=
|namespace=
|def="Neural tree organ which is continuous with the brain. Examples: Trochlear nerve, facial nerve[FMA]. // Any of the major paired nerves of the head region. // Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [Wikipedia:Cranial_nerve, XB:curator, ZFIN:curator]
|def="Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord. In humans, there are traditionally twelve pairs of cranial nerves. Only the first and the second pair emerge from the cerebrum; the remaining ten pairs emerge from the brainstem[WP]." [Wikipedia:Cranial_nerve]
|xref=AAO:0000108;;BTO:0001104;;EHDAA2:0000323;;EMAPA:17263;;EMAPA:17264;;FMA:5865;;GAID:802;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Brain_human_normal_inferior_view_with_labels_en.svg/200px-Brain_human_normal_inferior_view_with_labels_en.svg.png;;MA:0000215;;MESH:A.08.800.800.120;;ncithesaurus:Cranial_Nerve;;NIF_GrossAnatomy:birnlex_1623;;OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA;;SCTID:244447006;;TAO:0000641;;VHOG:0000279;;XAO:0003089;;ZFA:0000641
|xref=AAO:0000108;;BTO:0001104;;EHDAA2:0000323;;EMAPA:17263;;EMAPA:17264;;FMA:5865;;GAID:802;;http://upload.wikimedia.org/wikipedia/commons/1/18/Brain_human_normal_inferior_view_with_labels_en-2.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Brain_human_normal_inferior_view_with_labels_en.svg/200px-Brain_human_normal_inferior_view_with_labels_en.svg.png;;MA:0000215;;MESH:A.08.800.800.120;;ncithesaurus:Cranial_Nerve;;NIF_GrossAnatomy:birnlex_1623;;OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA;;SCTID:244447006;;TAO:0000641;;VHOG:0000279;;XAO:0003089;;ZFA:0000641
|is_a=UBERON:0001021
|is_a=UBERON:0001021;;UBERON:0010314
|synonym="cranial nerves" RELATED [];;"cranial neural tree organ" EXACT []
|synonym="cranial nerves" RELATED [];;"cranial neural tree organ" EXACT [];;"nervus cranialis" RELATED LATIN [Wikipedia:Cranial_nerve]
|comment=Editors note: not classified as a nerve in FMA. Note the structure of EMAPA is rather odd here - EMAPA:17264 (nerve of CNS) has a single child, cranial. We make EMAPA:17264 a subclass of this structure, as this appears to be the intent
|comment=Editors note: not classified as a nerve in FMA. Note the structure of EMAPA is rather odd here - EMAPA:17264 (nerve of CNS) has a single child, cranial. We make EMAPA:17264 a subclass of this structure, as this appears to be the intent
|alt_id=UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641
|alt_id=UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim;;vertebrate_core
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
Line 20: Line 19:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.[TAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:59, 26 June 2012

Name:cranial nerve
Definition:"Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord. In humans, there are traditionally twelve pairs of cranial nerves. Only the first and the second pair emerge from the cerebrum; the remaining ten pairs emerge from the brainstem[WP]." [Wikipedia:Cranial_nerve]
Xrefs:
links:

AAO:0000108
BTO:0001104
EHDAA2:0000323
EMAPA:17263
EMAPA:17264
FMA:5865
GAID:802
[1]
[ 200px-Brain_human_normal_inferior_view_with_labels_en.svg.png 200px-Brain_human_normal_inferior_view_with_labels_en.svg.png]
MA:0000215
MESH:A.08.800.800.120
ncithesaurus:Cranial_Nerve
NIF_GrossAnatomy:birnlex_1623
OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA
SCTID:244447006
TAO:0000641
VHOG:0000279
XAO:0003089

ZFA:0000641
Synonyms: "cranial nerves" RELATED []
"cranial neural tree organ" EXACT []
"nervus cranialis" RELATED LATIN [Wikipedia:Cranial_nerve]
Comments:Editors note: not classified as a nerve in FMA. Note the structure of EMAPA is rather odd here - EMAPA:17264 (nerve of CNS) has a single child, cranial. We make EMAPA:17264 a subclass of this structure, as this appears to be the intent
Alt_id: UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001021(nerve),UBERON:0010314(structure with developmental contribution from neural crest)



Children

is a:UBERON:0000941 (cranial nerve II)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001785 (cranial nerve), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_6d601da4095f861eeab604ba2180eb3bp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_6d601da4095f861eeab604ba2180eb3bp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_1a5f33708bc0b969452086a20bc855dap@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_1a5f33708bc0b969452086a20bc855dap@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_1a5f33708bc0b969452086a20bc855dap@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_1a5f33708bc0b969452086a20bc855dap@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_1a5f33708bc0b969452086a20bc855dap@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_1a5f33708bc0b969452086a20bc855dap@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_1a5f33708bc0b969452086a20bc855dap@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_1a5f33708bc0b969452086a20bc855dap@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_1a5f33708bc0b969452086a20bc855dap@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_1a5f33708bc0b969452086a20bc855dap@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_1a5f33708bc0b969452086a20bc855dap@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_1a5f33708bc0b969452086a20bc855dap@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_1a5f33708bc0b969452086a20bc855dap@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_1a5f33708bc0b969452086a20bc855dap@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_1a5f33708bc0b969452086a20bc855dap@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_1a5f33708bc0b969452086a20bc855dap@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_1a5f33708bc0b969452086a20bc855dap@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_1a5f33708bc0b969452086a20bc855dap@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_1a5f33708bc0b969452086a20bc855dap@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_1a5f33708bc0b969452086a20bc855dap@chr5:149250331..149250335, -
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_57fed55761a10e5c25e283baa5099efep@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_57fed55761a10e5c25e283baa5099efep@chr7:73444812..73444816, +
2.55e-98FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_57fed55761a10e5c25e283baa5099efep@chr19:20382476..20382481, -
2.55e-98FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_57fed55761a10e5c25e283baa5099efep10@PPAP2A
2.55e-98FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_57fed55761a10e5c25e283baa5099efep@chr3:27750995..27750997, -
2.55e-98FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_57fed55761a10e5c25e283baa5099efep@chr14:85119696..85119699, +
2.55e-98FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_57fed55761a10e5c25e283baa5099efep3@BC098451
2.55e-98FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_57fed55761a10e5c25e283baa5099efep12@C16orf62
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_57fed55761a10e5c25e283baa5099efep@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_57fed55761a10e5c25e283baa5099efep@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_57fed55761a10e5c25e283baa5099efep10@ALK
2.55e-98FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_57fed55761a10e5c25e283baa5099efep@chr18:45498690..45498695, -
2.55e-98FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_57fed55761a10e5c25e283baa5099efep@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_57fed55761a10e5c25e283baa5099efep@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_57fed55761a10e5c25e283baa5099efep@chr5:172318159..172318160, +
2.55e-98FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_57fed55761a10e5c25e283baa5099efep@chr2:134472430..134472432, +
2.55e-98FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_57fed55761a10e5c25e283baa5099efep@chr8:130597061..130597068, +
2.55e-98FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_57fed55761a10e5c25e283baa5099efep@chr5:33229308..33229311, -
2.55e-98FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_57fed55761a10e5c25e283baa5099efep@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_57fed55761a10e5c25e283baa5099efep@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_57fed55761a10e5c25e283baa5099efep@chr14:78718132..78718157, +
2.55e-98FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_57fed55761a10e5c25e283baa5099efep@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_57fed55761a10e5c25e283baa5099efep@chr21:22483836..22483880, +
2.55e-98FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_57fed55761a10e5c25e283baa5099efep2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_57fed55761a10e5c25e283baa5099efep@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_57fed55761a10e5c25e283baa5099efep9@TCF25
2.55e-98FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_57fed55761a10e5c25e283baa5099efep@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_57fed55761a10e5c25e283baa5099efep@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_57fed55761a10e5c25e283baa5099efep@chr12:59444098..59444102, +
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_57fed55761a10e5c25e283baa5099efep@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_57fed55761a10e5c25e283baa5099efep@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_57fed55761a10e5c25e283baa5099efep@chr5:58471631..58471634, +
2.55e-98FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_57fed55761a10e5c25e283baa5099efep@chr15:36402459..36402465, -
2.55e-98FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_57fed55761a10e5c25e283baa5099efep@chr11:57030314..57030346, +
2.55e-98FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_57fed55761a10e5c25e283baa5099efep@chr7:73444812..73444816, +
2.55e-98FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_57fed55761a10e5c25e283baa5099efep4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr3:27750995..27750997,-#_57fed55761a10e5c25e283baa5099efep@chr3:27750995..27750997, -
2.55e-98FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_57fed55761a10e5c25e283baa5099efep@chr4:139501766..139501798, -
2.55e-98FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_57fed55761a10e5c25e283baa5099efep@chr16:66170755..66170759, -
2.55e-98FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_57fed55761a10e5c25e283baa5099efep@chr10:118927879..118927891, +
2.55e-98FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_57fed55761a10e5c25e283baa5099efep@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_57fed55761a10e5c25e283baa5099efep1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_57fed55761a10e5c25e283baa5099efep@chr2:29484252..29484254, -
2.55e-98FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_57fed55761a10e5c25e283baa5099efep@chr12:68567714..68567717, +
2.55e-98FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_57fed55761a10e5c25e283baa5099efep@chr3:39827273..39827281, +
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_57fed55761a10e5c25e283baa5099efep10@ALK
2.55e-98FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_57fed55761a10e5c25e283baa5099efep@chr12:59444098..59444102, +
2.55e-98FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_57fed55761a10e5c25e283baa5099efep18@TGFB3
2.55e-98FFCP PHASE1:Hg19::chr12:127992016..127992052,+#_57fed55761a10e5c25e283baa5099efep@chr12:127992016..127992052, +
2.55e-98FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_57fed55761a10e5c25e283baa5099efep@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_57fed55761a10e5c25e283baa5099efep@chr5:126962527..126962529, -
2.55e-98FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_57fed55761a10e5c25e283baa5099efep@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_57fed55761a10e5c25e283baa5099efep@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_57fed55761a10e5c25e283baa5099efep2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_57fed55761a10e5c25e283baa5099efep@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_57fed55761a10e5c25e283baa5099efep59@ANK3
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_57fed55761a10e5c25e283baa5099efep@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_57fed55761a10e5c25e283baa5099efep@chr22:30951607..30951613, -
2.55e-98FFCP PHASE1:Hg19::chr7:88535666..88535671,+#_57fed55761a10e5c25e283baa5099efep@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_57fed55761a10e5c25e283baa5099efep@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_57fed55761a10e5c25e283baa5099efep@chr1:218214846..218214850, -
2.55e-98FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_57fed55761a10e5c25e283baa5099efep@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_57fed55761a10e5c25e283baa5099efep@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_57fed55761a10e5c25e283baa5099efep@chr2:133035182..133035195, -
2.55e-98FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_57fed55761a10e5c25e283baa5099efep@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_57fed55761a10e5c25e283baa5099efep9@TCF25
2.55e-98FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_57fed55761a10e5c25e283baa5099efep@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_57fed55761a10e5c25e283baa5099efep@chr4:139501766..139501798, -
2.55e-98FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_57fed55761a10e5c25e283baa5099efep@chr11:30166055..30166059, -
2.55e-98FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_57fed55761a10e5c25e283baa5099efep@chr9:79519652..79519664, -
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_57fed55761a10e5c25e283baa5099efep1@ENST00000510391
2.55e-98FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_57fed55761a10e5c25e283baa5099efep@chr2:29484252..29484254, -
2.55e-98FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_57fed55761a10e5c25e283baa5099efep@chr14:37227792..37227796, -
2.55e-98FFCP PHASE2:Hg19::chr12:296753..296755,-#_57fed55761a10e5c25e283baa5099efep@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_57fed55761a10e5c25e283baa5099efep@chr1:44991346..44991355, +
2.55e-98FFCP PHASE1:Hg19::chr14:106176908..106176916,-#_57fed55761a10e5c25e283baa5099efep3@BC098451
2.55e-98FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_57fed55761a10e5c25e283baa5099efep@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_57fed55761a10e5c25e283baa5099efep@chr3:39827273..39827281, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001785&oldid=1835577"