UBERON:0003887: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 17:04, 26 June 2012
| Name: | intraembryonic coelom | ||
|---|---|---|---|
| Definition: | "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom] | ||
| Xrefs: |
| ||
| Synonyms: | "somatic coelom" EXACT [Wikipedia:Intraembryonic_coelom] | ||
| Comments: | TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. Todo: check ZFA, which appears to be a structure present in adults |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003886(body cavity precursor) |
|---|
Children
| develops from: | UBERON:0001179 (peritoneal cavity) |
|---|---|
| part of: | UBERON:0002120 (pronephros) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003887 (intraembryonic coelom), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.61e-53 | FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_4c6da0d1970fea77a9a8ec2fc9af5054 | p@chr7:4051097..4051112, + |
| 4.61e-53 | FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_4c6da0d1970fea77a9a8ec2fc9af5054 | p@chr7:4051097..4051112, + |
| 2.77e-52 | FFCP PHASE2:Mm9::chr19:45161527..45161539,+#_b87fcab46e1cb142f46b45acc893805c | p@chr19:45161527..45161539, + |
| 2.77e-52 | FFCP PHASE1:Mm9::chr19:45161527..45161539,+#_b87fcab46e1cb142f46b45acc893805c | p@chr19:45161527..45161539, + |
| 5.59e-50 | FFCP PHASE2:Hg19::chr10:15416548..15416557,-#_40bf3d3fd199b0acbbbcb42a4a642d23 | p@chr10:15416548..15416557, - |
| 5.59e-50 | FFCP PHASE1:Hg19::chr10:15416548..15416557,-#_40bf3d3fd199b0acbbbcb42a4a642d23 | p@chr10:15416548..15416557, - |
| 4.52e-45 | FFCP PHASE1:Mm9::chr19:45224323..45224368,+#_ea32bbb458ce86879e2f65a95e1c2d2b | p@chr19:45224323..45224368, + |
| 4.52e-45 | FFCP PHASE2:Mm9::chr19:45224323..45224368,+#_ea32bbb458ce86879e2f65a95e1c2d2b | p@chr19:45224323..45224368, + |
| 3.17e-44 | FFCP PHASE2:Hg19::chrX:11284012..11284023,-#_00ad8b217146d8ec8722a81f76d5844f | p16@ARHGAP6 |
| 3.17e-44 | FFCP PHASE1:Hg19::chrX:11284012..11284023,-#_00ad8b217146d8ec8722a81f76d5844f | p16@ARHGAP6 |
| 8.43e-44 | FFCP PHASE2:Mm9::chr13:108293519..108293533,-#_b440897647f8ba20565fc644bc93c417 | p@chr13:108293519..108293533, - |
| 8.43e-44 | FFCP PHASE1:Mm9::chr13:108293519..108293533,-#_b440897647f8ba20565fc644bc93c417 | p@chr13:108293519..108293533, - |
| 1.59e-39 | FFCP PHASE2:Mm9::chr19:42116119..42116133,+#_ea6ab282312baa629790e643fc868e6c | p@chr19:42116119..42116133, + |
| 1.59e-39 | FFCP PHASE1:Mm9::chr19:42116119..42116133,+#_ea6ab282312baa629790e643fc868e6c | p@chr19:42116119..42116133, + |
| 8.61e-38 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_2a89a65bd570b3cb0b949c7c4ed90a45 | p@chr2:120409486..120409492, + |
| 8.61e-38 | FFCP PHASE1:Hg19::chr17:72313399..72313408,-#_2a89a65bd570b3cb0b949c7c4ed90a45 | p@chr17:72313399..72313408, - |
| 8.61e-38 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_2a89a65bd570b3cb0b949c7c4ed90a45 | p@chr2:120409486..120409492, + |
| 8.61e-38 | FFCP PHASE2:Hg19::chr17:72313399..72313408,-#_2a89a65bd570b3cb0b949c7c4ed90a45 | p@chr17:72313399..72313408, - |
| 9.76e-38 | FFCP PHASE1:Hg19::chr1:32042590..32042605,+#_bb0c76046a199586dcbd17da76c5bb37 | p24@TINAGL1 |
| 9.76e-38 | FFCP PHASE2:Hg19::chr1:32042590..32042605,+#_bb0c76046a199586dcbd17da76c5bb37 | p24@TINAGL1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:56859584..56859589,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859584..56859589, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_65704eaef37b23c8078e41c91b5804d0 | p1@uc003pyn.1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_65704eaef37b23c8078e41c91b5804d0 | p1@uc001ftm.1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_65704eaef37b23c8078e41c91b5804d0 | p18@AIF1L |
| 5.98e-34 | FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr17:78171885..78171900, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr16:84218794..84218800, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_65704eaef37b23c8078e41c91b5804d0 | p5@NR5A1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859603..56859606, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr21:28820892..28820899,-#_65704eaef37b23c8078e41c91b5804d0 | p4@ENST00000420186, p4@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_65704eaef37b23c8078e41c91b5804d0 | p60@SYNE1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr10:98014908..98014919, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr14:68644730..68644737, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_65704eaef37b23c8078e41c91b5804d0 | p8@NR5A1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr19:32401253..32401271, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr1:172416185..172416189, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_65704eaef37b23c8078e41c91b5804d0 | p11@PDLIM2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_65704eaef37b23c8078e41c91b5804d0 | p21@PTAFR |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:124516729..124516752,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr9:124516729..124516752, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr21:28820954..28820963,-#_65704eaef37b23c8078e41c91b5804d0 | p3@ENST00000420186, p3@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859603..56859606, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_65704eaef37b23c8078e41c91b5804d0 | p10@VPS13A |
| 5.98e-34 | FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_65704eaef37b23c8078e41c91b5804d0 | p2@ENST00000517384 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr3:31465107..31465133,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr3:31465107..31465133, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr9:127260615..127260651, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr1:157811772..157811796,-#_65704eaef37b23c8078e41c91b5804d0 | p7@CD5L |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr10:98014908..98014919, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859608..56859619, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr21:28820911..28820933,-#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000420186, p1@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr4:76901930..76901942,+#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000501239 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr10:98014943..98014960, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:127269462..127269484,-#_65704eaef37b23c8078e41c91b5804d0 | p2@NR5A1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chrX:69645652..69645664,+#_65704eaef37b23c8078e41c91b5804d0 | p7@GDPD2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000524012 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859608..56859619, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr8:22424743..22424759,-#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000517384 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_65704eaef37b23c8078e41c91b5804d0 | p1@uc003pyn.1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_65704eaef37b23c8078e41c91b5804d0 | p1@uc001ftm.1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr10:98014943..98014960, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859638..56859643, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr21:28820941..28820952,-#_65704eaef37b23c8078e41c91b5804d0 | p2@ENST00000420186, p2@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_65704eaef37b23c8078e41c91b5804d0 | p19@RAPGEF5 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr21:28820892..28820899,-#_65704eaef37b23c8078e41c91b5804d0 | p4@ENST00000420186, p4@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:1891326..1891337, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:133973310..133973321,+#_65704eaef37b23c8078e41c91b5804d0 | p18@AIF1L |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:127269488..127269495,-#_65704eaef37b23c8078e41c91b5804d0 | p5@NR5A1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_65704eaef37b23c8078e41c91b5804d0 | p12@JDP2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_65704eaef37b23c8078e41c91b5804d0 | p8@NR5A1 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr19:32401253..32401271, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr9:79894790..79894797,+#_65704eaef37b23c8078e41c91b5804d0 | p10@VPS13A |
| 5.98e-34 | FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_65704eaef37b23c8078e41c91b5804d0 | p60@SYNE1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr16:84218794..84218800, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr9:124516729..124516752, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr15:95561320..95561328, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859638..56859643, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr1:172416185..172416189, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_65704eaef37b23c8078e41c91b5804d0 | p10@PAX2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr8:22436248..22436259,+#_65704eaef37b23c8078e41c91b5804d0 | p11@PDLIM2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr3:31465107..31465133,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr3:31465107..31465133, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:1891326..1891337, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859693..56859701, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_65704eaef37b23c8078e41c91b5804d0 | p3@ENST00000420186, p3@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_65704eaef37b23c8078e41c91b5804d0 | p2@ENST00000517384 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_65704eaef37b23c8078e41c91b5804d0 | p21@PTAFR |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr9:127260615..127260651, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000420186, p1@uc002ymh.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr17:78171885..78171900, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_65704eaef37b23c8078e41c91b5804d0 | p12@JDP2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_65704eaef37b23c8078e41c91b5804d0 | p7@CD5L |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:925449..925458,+#_65704eaef37b23c8078e41c91b5804d0 | p17@AP2A2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_65704eaef37b23c8078e41c91b5804d0 | p2@NR5A1 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr15:95561320..95561328, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859584..56859589, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_65704eaef37b23c8078e41c91b5804d0 | p10@PAX2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_65704eaef37b23c8078e41c91b5804d0 | p@chr11:56859693..56859701, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr4:76901930..76901942,+#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000501239 |
| 5.98e-34 | FFCP PHASE2:Hg19::chrX:69645652..69645664,+#_65704eaef37b23c8078e41c91b5804d0 | p7@GDPD2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000517384 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_65704eaef37b23c8078e41c91b5804d0 | p1@ENST00000524012 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_65704eaef37b23c8078e41c91b5804d0 | p@chr14:68644730..68644737, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr11:925449..925458,+#_65704eaef37b23c8078e41c91b5804d0 | p17@AP2A2 |
