UBERON:0004151: Difference between revisions
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|has_quality= | |has_quality= | ||
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|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:04, 26 June 2012
| Name: | cardiac chamber | ||
|---|---|---|---|
| Definition: | "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205] | ||
| Xrefs: |
| ||
| Synonyms: |
"chamber of heart" EXACT [] "heart chamber" EXACT [] | ||
| Comments: | generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure) |
|---|
Children
| is a: | UBERON:0002081 (cardiac atrium),UBERON:0002082 (cardiac ventricle) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10078-102A6 (left ventricle, adult, donor1)
- 10079-102A7 (left atrium, adult, donor1)
- 10207-103F9 (heart - tricuspid valve, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004151 (cardiac chamber), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.16e-117 | FFCP PHASE2:Hg19::chr2:179585314..179585321,-#_4793eb66e5cf4bacc42acbf7d8da92a3 | p@chr2:179585314..179585321, - |
| 1.16e-117 | FFCP PHASE1:Hg19::chr2:179585314..179585321,-#_4793eb66e5cf4bacc42acbf7d8da92a3 | p@chr2:179585314..179585321, - |
| 9.74e-88 | FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_f0d704bc4df8cc26e110c25582f31a0e | p@chr1:11905799..11905806, - |
| 9.74e-88 | FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_f0d704bc4df8cc26e110c25582f31a0e | p9@NPPA |
| 9.74e-88 | FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_f0d704bc4df8cc26e110c25582f31a0e | p@chr1:11905799..11905806, - |
| 9.74e-88 | FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_f0d704bc4df8cc26e110c25582f31a0e | p9@NPPA |
| 1.52e-87 | FFCP PHASE1:Hg19::chr1:1154360..1154365,-#_1bce306d93f5549e8031ae42cc01a784 | p@chr1:1154360..1154365, - |
| 1.52e-87 | FFCP PHASE2:Hg19::chr1:1154360..1154365,-#_1bce306d93f5549e8031ae42cc01a784 | p@chr1:1154360..1154365, - |
| 1.52e-87 | FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_1bce306d93f5549e8031ae42cc01a784 | p@chr20:55732283..55732288, - |
| 1.52e-87 | FFCP PHASE2:Hg19::chr20:55732283..55732288,-#_1bce306d93f5549e8031ae42cc01a784 | p@chr20:55732283..55732288, - |
| 4.06e-85 | FFCP PHASE1:Hg19::chr1:78408547..78408558,+#_cd351a2f063cbb520d541c4b6a3e035e | p@chr1:78408547..78408558, + |
| 4.06e-85 | FFCP PHASE2:Hg19::chr1:78408547..78408558,+#_cd351a2f063cbb520d541c4b6a3e035e | p@chr1:78408547..78408558, + |
| 9.61e-85 | FFCP PHASE2:Hg19::chr1:11907441..11907453,-#_e6e5615ac83270f81a2bf7c76583c2c2 | p3@NPPA |
| 9.61e-85 | FFCP PHASE1:Hg19::chr2:179396338..179396348,-#_e6e5615ac83270f81a2bf7c76583c2c2 | p@chr2:179396338..179396348, - |
| 9.61e-85 | FFCP PHASE2:Hg19::chr2:179396338..179396348,-#_e6e5615ac83270f81a2bf7c76583c2c2 | p@chr2:179396338..179396348, - |
| 9.61e-85 | FFCP PHASE1:Hg19::chr1:11907441..11907453,-#_e6e5615ac83270f81a2bf7c76583c2c2 | p3@NPPA |
| 1.28e-84 | FFCP PHASE2:Hg19::chr1:11907940..11907947,-#_e92fe02bc6e4dd8ff7d8cc496769d057 | p2@NPPA |
| 1.28e-84 | FFCP PHASE1:Hg19::chr1:11907940..11907947,-#_e92fe02bc6e4dd8ff7d8cc496769d057 | p2@NPPA |
| 2.27e-84 | FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_3f1a8f99905a7e7caa35f6f5a030f51d | p@chrX:112324334..112324339, - |
| 2.27e-84 | FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_3f1a8f99905a7e7caa35f6f5a030f51d | p@chrX:112324334..112324339, - |
| 1.29e-74 | FFCP PHASE1:Hg19::chr20:44035965..44035976,+#_eda2eafd9d55cc70720fd9c44e9adbb3 | p30@DBNDD2 |
| 1.29e-74 | FFCP PHASE2:Hg19::chr20:44035965..44035976,+#_eda2eafd9d55cc70720fd9c44e9adbb3 | p30@DBNDD2 |
| 1.66e-74 | FFCP PHASE1:Hg19::chr2:179504505..179504514,-#_8ff53d7190e118e4552ec390df26de53 | p@chr2:179504505..179504514, - |
| 1.66e-74 | FFCP PHASE2:Hg19::chr2:179504505..179504514,-#_8ff53d7190e118e4552ec390df26de53 | p@chr2:179504505..179504514, - |
| 3.54e-74 | FFCP PHASE1:Hg19::chr1:201328779..201328797,-#_6355d6ee7fc609662e894c66a0cb9f25 | p@chr1:201328779..201328797, - |
| 3.54e-74 | FFCP PHASE2:Hg19::chr1:201328779..201328797,-#_6355d6ee7fc609662e894c66a0cb9f25 | p@chr1:201328779..201328797, - |
| 3.54e-74 | FFCP PHASE1:Hg19::chr3:131523446..131523459,-#_6355d6ee7fc609662e894c66a0cb9f25 | p@chr3:131523446..131523459, - |
| 3.54e-74 | FFCP PHASE2:Hg19::chr3:131523446..131523459,-#_6355d6ee7fc609662e894c66a0cb9f25 | p@chr3:131523446..131523459, - |
| 5.84e-74 | FFCP PHASE1:Hg19::chr1:206838422..206838456,+#_158afd2de3a4f7bb378e4186bd8ef764 | p@chr1:206838422..206838456, + |
| 5.84e-74 | FFCP PHASE2:Hg19::chr1:206838422..206838456,+#_158afd2de3a4f7bb378e4186bd8ef764 | p@chr1:206838422..206838456, + |
| 2.04e-73 | FFCP PHASE1:Hg19::chr3:16940540..16940554,+#_708adbf28481f959c3777ac41f9c932f | p@chr3:16940540..16940554, + |
| 2.04e-73 | FFCP PHASE2:Hg19::chr3:16940540..16940554,+#_708adbf28481f959c3777ac41f9c932f | p@chr3:16940540..16940554, + |
| 7.85e-67 | FFCP PHASE1:Hg19::chr1:201328328..201328343,-#_e9f55e80dc6f02b3f6a69fc8097f5398 | p@chr1:201328328..201328343, - |
| 7.85e-67 | FFCP PHASE2:Hg19::chr1:201328328..201328343,-#_e9f55e80dc6f02b3f6a69fc8097f5398 | p@chr1:201328328..201328343, - |
| 9.82e-67 | FFCP PHASE2:Hg19::chr2:179399691..179399696,-#_5ff51ccd2b60335f7dcf3269b42dde82 | p@chr2:179399691..179399696, - |
| 9.82e-67 | FFCP PHASE1:Hg19::chr2:179399691..179399696,-#_5ff51ccd2b60335f7dcf3269b42dde82 | p@chr2:179399691..179399696, - |
| 1.92e-66 | FFCP PHASE1:Hg19::chr7:123302841..123302854,+#_05fa294516d670c9ff5da965ae3fb2af | p@chr7:123302841..123302854, + |
| 1.92e-66 | FFCP PHASE2:Hg19::chr7:123302841..123302854,+#_05fa294516d670c9ff5da965ae3fb2af | p@chr7:123302841..123302854, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr17:79385898..79385905, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p10@NPPA |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p10@NPPA |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr5:99390735..99390743, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr10:92678409..92678410, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr15:86272097..86272099, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr5:99390735..99390743, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr17:79385898..79385905, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr15:86272097..86272099, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr10:92678409..92678410, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr1:43676416..43676417, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_c19505a5634f1ba6f4a9d5759b2102b7 | p@chr1:43676416..43676417, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_7dc2f22b532c4bb45a10a1619c13b360 | p2@MYL7 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr5:80555040..80555044,+#_7dc2f22b532c4bb45a10a1619c13b360 | p@chr5:80555040..80555044, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_7dc2f22b532c4bb45a10a1619c13b360 | p2@MYL7 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr12:56091538..56091540,-#_7dc2f22b532c4bb45a10a1619c13b360 | p@chr12:56091538..56091540, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_7dc2f22b532c4bb45a10a1619c13b360 | p@chr1:11905830..11905839, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_7dc2f22b532c4bb45a10a1619c13b360 | p@chr1:11905830..11905839, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr12:56091538..56091540,-#_7dc2f22b532c4bb45a10a1619c13b360 | p@chr12:56091538..56091540, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr5:80555040..80555044,+#_7dc2f22b532c4bb45a10a1619c13b360 | p@chr5:80555040..80555044, + |
| 3.01e-66 | FFCP PHASE1:Hg19::chr10:127569398..127569410,-#_761ed3a2abd0884dc70ba1d07b74def0 | p5@DHX32 |
| 3.01e-66 | FFCP PHASE2:Hg19::chr10:127569398..127569410,-#_761ed3a2abd0884dc70ba1d07b74def0 | p5@DHX32 |
| 3.35e-66 | FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_e6760969cff9bf7efbdc63b3ca1a43c4 | p@chr12:4735761..4735787, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:11906020..11906041,+#_e6760969cff9bf7efbdc63b3ca1a43c4 | p@chr1:11906020..11906041, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_e6760969cff9bf7efbdc63b3ca1a43c4 | p3@MYL7 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:11906020..11906041,+#_e6760969cff9bf7efbdc63b3ca1a43c4 | p@chr1:11906020..11906041, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_e6760969cff9bf7efbdc63b3ca1a43c4 | p3@MYL7 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr14:23854188..23854193,-#_e6760969cff9bf7efbdc63b3ca1a43c4 | p@chr14:23854188..23854193, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr14:23854188..23854193,-#_e6760969cff9bf7efbdc63b3ca1a43c4 | p@chr14:23854188..23854193, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_e6760969cff9bf7efbdc63b3ca1a43c4 | p@chr12:4735761..4735787, - |
| 3.76e-66 | FFCP PHASE1:Hg19::chrX:121555838..121555874,+#_4473824453022ac01d87d4903f9e49e4 | p@chrX:121555838..121555874, + |
| 3.76e-66 | FFCP PHASE2:Hg19::chrX:121555838..121555874,+#_4473824453022ac01d87d4903f9e49e4 | p@chrX:121555838..121555874, + |
| 4.68e-66 | FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_ac73fbb79bbbaeaf4d74d46e4bbf4f78 | p@chr7:44178491..44178498, - |
| 4.68e-66 | FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_ac73fbb79bbbaeaf4d74d46e4bbf4f78 | p@chr7:44178491..44178498, - |
| 5.88e-66 | FFCP PHASE1:Hg19::chr2:179648899..179648909,-#_ecd9c285b12423fa390356ff14b7fdd5 | p@chr2:179648899..179648909, - |
| 5.88e-66 | FFCP PHASE2:Hg19::chr2:179648899..179648909,-#_ecd9c285b12423fa390356ff14b7fdd5 | p@chr2:179648899..179648909, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chr11:20070858..20070863,-#_d8a3dc25b55248d21bf6191dae25adc9 | p5@NAV2-AS2 |
| 6.53e-66 | FFCP PHASE1:Hg19::chr9:38311053..38311058,+#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr9:38311053..38311058, + |
| 6.53e-66 | FFCP PHASE2:Hg19::chr9:38311053..38311058,+#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr9:38311053..38311058, + |
| 6.53e-66 | FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr12:114886577..114886589, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chr2:15679051..15679071,-#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr2:15679051..15679071, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chr20:32029111..32029122,-#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr20:32029111..32029122, - |
| 6.53e-66 | FFCP PHASE2:Hg19::chr11:20070858..20070863,-#_d8a3dc25b55248d21bf6191dae25adc9 | p5@NAV2-AS2 |
| 6.53e-66 | FFCP PHASE2:Hg19::chr20:32029111..32029122,-#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr20:32029111..32029122, - |
| 6.53e-66 | FFCP PHASE2:Hg19::chr2:15679051..15679071,-#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr2:15679051..15679071, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_d8a3dc25b55248d21bf6191dae25adc9 | p@chr12:114886577..114886589, - |
| 7.35e-66 | FFCP PHASE1:Hg19::chr6:36812225..36812238,-#_239150bd39b63bb1286c680e0dafd4a7 | p@chr6:36812225..36812238, - |
| 7.35e-66 | FFCP PHASE2:Hg19::chr6:36812225..36812238,-#_239150bd39b63bb1286c680e0dafd4a7 | p@chr6:36812225..36812238, - |
| 1.79e-65 | FFCP PHASE1:Hg19::chr4:62999501..62999517,+#_ed4a0814db5773f01e0ff470bc6ec4c9 | p@chr4:62999501..62999517, + |
| 1.79e-65 | FFCP PHASE2:Hg19::chr4:62999501..62999517,+#_ed4a0814db5773f01e0ff470bc6ec4c9 | p@chr4:62999501..62999517, + |
| 2.98e-60 | FFCP PHASE1:Hg19::chr5:79029312..79029328,+#_1f7d65b25ebf4e1e732a434e921befc4 | p9@CMYA5 |
| 2.98e-60 | FFCP PHASE2:Hg19::chr5:79029312..79029328,+#_1f7d65b25ebf4e1e732a434e921befc4 | p9@CMYA5 |
| 3.65e-60 | FFCP PHASE1:Hg19::chr1:201328177..201328208,-#_beb98853c82cc88174ec6dc6a040ebc9 | p@chr1:201328177..201328208, - |
| 3.65e-60 | FFCP PHASE2:Hg19::chr1:201328177..201328208,-#_beb98853c82cc88174ec6dc6a040ebc9 | p@chr1:201328177..201328208, - |
| 3.65e-60 | FFCP PHASE1:Hg19::chr4:47833348..47833366,+#_beb98853c82cc88174ec6dc6a040ebc9 | p@chr4:47833348..47833366, + |
| 3.65e-60 | FFCP PHASE2:Hg19::chr4:47833348..47833366,+#_beb98853c82cc88174ec6dc6a040ebc9 | p@chr4:47833348..47833366, + |
| 4.46e-60 | FFCP PHASE2:Hg19::chr5:145439648..145439659,+#_df793800a25fb58cfb6d3b15f09521f8 | p1@FJ695509 |
| 4.46e-60 | FFCP PHASE1:Hg19::chr2:71576703..71576714,+#_df793800a25fb58cfb6d3b15f09521f8 | p15@ZNF638 |
| 4.46e-60 | FFCP PHASE2:Hg19::chr2:71576703..71576714,+#_df793800a25fb58cfb6d3b15f09521f8 | p15@ZNF638 |
| 4.46e-60 | FFCP PHASE1:Hg19::chr5:145439648..145439659,+#_df793800a25fb58cfb6d3b15f09521f8 | p1@FJ695509 |
| 6.68e-60 | FFCP PHASE2:Hg19::chr15:86227895..86227898,+#_a3f6a60c3a87444637d2500dc14803de | p54@AKAP13 |
| 6.68e-60 | FFCP PHASE1:Hg19::chr15:86227895..86227898,+#_a3f6a60c3a87444637d2500dc14803de | p54@AKAP13 |
