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|id=CL:0000558
|id=CL:0000558
|name=reticulocyte
|name=reticulocyte
|namespace=efo
|namespace=cell;;efo
|def="An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds." [GOC:add, GOC:tfm, PMID:15946868, PMID:2037622]
|def="An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds." [GOC:add, GOC:tfm, PMID:15946868, PMID:2037622]
|xref=BTO:0001173
|xref=BTO:0001173
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000552
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:25, 26 June 2012

Name:reticulocyte
Namespace:cell;;efo
Definition:"An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds." [GOC:add, GOC:tfm, PMID:15946868, PMID:2037622]
Xrefs:
links:
BTO:0001173


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000764(erythroid lineage cell)



Children


derives from:FF:0011169 (human reticulocyte sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11931-125I5 (CD34 cells differentiated to erythrocyte lineage, biol_ rep1)
  • 11932-125I6 (CD34 cells differentiated to erythrocyte lineage, biol_ rep2)

Mouse (Mus musculus)

  • 11931-125I5 (CD34 cells differentiated to erythrocyte lineage, biol_ rep1)
  • 11932-125I6 (CD34 cells differentiated to erythrocyte lineage, biol_ rep2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000558 (reticulocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr1:95582484..95582492,+#_52b620a34b25e84ba426b68b5ad61be6p10@TMEM56
3.29e-195FFCP PHASE1:Hg19::chr1:25598993..25599007,+#_52b620a34b25e84ba426b68b5ad61be6p1@RHD
3.29e-195FFCP PHASE2:Hg19::chr11:5248435..5248444,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5248435..5248444, +
3.29e-195FFCP PHASE2:Hg19::chr1:95582484..95582492,+#_52b620a34b25e84ba426b68b5ad61be6p10@TMEM56
3.29e-195FFCP PHASE1:Hg19::chr16:227522..227524,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:227522..227524, +
3.29e-195FFCP PHASE2:Hg19::chr6:10585661..10585670,+#_52b620a34b25e84ba426b68b5ad61be6p26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:25598993..25599007,+#_52b620a34b25e84ba426b68b5ad61be6p1@RHD
3.29e-195FFCP PHASE1:Hg19::chr11:5247692..5247701,-#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5247692..5247701, -
3.29e-195FFCP PHASE2:Hg19::chr11:5247730..5247736,-#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr19:1207927..1207939,-#_52b620a34b25e84ba426b68b5ad61be6p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE1:Hg19::chr1:220146675..220146678,-#_52b620a34b25e84ba426b68b5ad61be6p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE2:Hg19::chr16:15616042..15616045,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:15616042..15616045, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205190..23205198,+#_52b620a34b25e84ba426b68b5ad61be6p10@KLHL7
3.29e-195FFCP PHASE1:Hg19::chr4:82805715..82805717,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:82805715..82805717, +
3.29e-195FFCP PHASE2:Hg19::chr19:1207927..1207939,-#_52b620a34b25e84ba426b68b5ad61be6p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE2:Hg19::chr17:42366115..42366125,+#_52b620a34b25e84ba426b68b5ad61be6p@chr17:42366115..42366125, +
3.29e-195FFCP PHASE1:Hg19::chr6:155472342..155472346,-#_52b620a34b25e84ba426b68b5ad61be6p@chr6:155472342..155472346, -
3.29e-195FFCP PHASE2:Hg19::chr1:220146675..220146678,-#_52b620a34b25e84ba426b68b5ad61be6p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE1:Hg19::chr1:5543682..5543685,+#_52b620a34b25e84ba426b68b5ad61be6p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE2:Hg19::chr4:82805715..82805717,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:82805715..82805717, +
3.29e-195FFCP PHASE1:Hg19::chr11:5255612..5255613,-#_52b620a34b25e84ba426b68b5ad61be6p10@HBD
3.29e-195FFCP PHASE2:Hg19::chr6:155472342..155472346,-#_52b620a34b25e84ba426b68b5ad61be6p@chr6:155472342..155472346, -
3.29e-195FFCP PHASE2:Hg19::chr1:5543682..5543685,+#_52b620a34b25e84ba426b68b5ad61be6p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE2:Hg19::chr12:75560876..75560881,+#_52b620a34b25e84ba426b68b5ad61be6p@chr12:75560876..75560881, +
3.29e-195FFCP PHASE1:Hg19::chr11:29581179..29581180,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:29581179..29581180, +
3.29e-195FFCP PHASE2:Hg19::chr16:67228546..67228549,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:67228546..67228549, +
3.29e-195FFCP PHASE1:Hg19::chr4:175593804..175593809,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:175593804..175593809, +
3.29e-195FFCP PHASE2:Hg19::chr7:23205201..23205207,+#_52b620a34b25e84ba426b68b5ad61be6p13@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr14:96742091..96742094,-#_52b620a34b25e84ba426b68b5ad61be6p@chr14:96742091..96742094, -
3.29e-195FFCP PHASE2:Hg19::chr12:131245491..131245492,+#_52b620a34b25e84ba426b68b5ad61be6p@chr12:131245491..131245492, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585661..10585670,+#_52b620a34b25e84ba426b68b5ad61be6p26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr15:71406717..71406718,+#_52b620a34b25e84ba426b68b5ad61be6p@chr15:71406717..71406718, +
3.29e-195FFCP PHASE1:Hg19::chr14:55799575..55799582,+#_52b620a34b25e84ba426b68b5ad61be6p@chr14:55799575..55799582, +
3.29e-195FFCP PHASE2:Hg19::chr17:42343955..42343974,-#_52b620a34b25e84ba426b68b5ad61be6p@chr17:42343955..42343974, -
3.29e-195FFCP PHASE2:Hg19::chr4:175593804..175593809,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:175593804..175593809, +
3.29e-195FFCP PHASE1:Hg19::chr1:25599018..25599028,+#_52b620a34b25e84ba426b68b5ad61be6p3@RHD
3.29e-195FFCP PHASE1:Hg19::chr11:5248435..5248444,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5248435..5248444, +
3.29e-195FFCP PHASE1:Hg19::chr4:190941380..190941381,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:190941380..190941381, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726561..49726577,+#_52b620a34b25e84ba426b68b5ad61be6p3@RNF123
3.29e-195FFCP PHASE1:Hg19::chr19:19535964..19535966,+#_52b620a34b25e84ba426b68b5ad61be6p@chr19:19535964..19535966, +
3.29e-195FFCP PHASE1:Hg19::chr13:23969126..23969130,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:23969126..23969130, +
3.29e-195FFCP PHASE2:Hg19::chr6:10585672..10585677,+#_52b620a34b25e84ba426b68b5ad61be6p42@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:25599018..25599028,+#_52b620a34b25e84ba426b68b5ad61be6p3@RHD
3.29e-195FFCP PHASE1:Hg19::chr11:5247730..5247736,-#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr2:71833597..71833600,+#_52b620a34b25e84ba426b68b5ad61be6p@chr2:71833597..71833600, +
3.29e-195FFCP PHASE2:Hg19::chr4:190941380..190941381,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:190941380..190941381, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726561..49726577,+#_52b620a34b25e84ba426b68b5ad61be6p3@RNF123
3.29e-195FFCP PHASE2:Hg19::chr19:19535964..19535966,+#_52b620a34b25e84ba426b68b5ad61be6p@chr19:19535964..19535966, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205201..23205207,+#_52b620a34b25e84ba426b68b5ad61be6p13@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr10:94679592..94679594,-#_52b620a34b25e84ba426b68b5ad61be6p@chr10:94679592..94679594, -
3.29e-195FFCP PHASE2:Hg19::chr17:42392517..42392522,+#_52b620a34b25e84ba426b68b5ad61be6p17@RUNDC3A
3.29e-195FFCP PHASE2:Hg19::chr2:71833597..71833600,+#_52b620a34b25e84ba426b68b5ad61be6p@chr2:71833597..71833600, +
3.29e-195FFCP PHASE1:Hg19::chr1:158580993..158580998,-#_52b620a34b25e84ba426b68b5ad61be6p@chr1:158580993..158580998, -
3.29e-195FFCP PHASE2:Hg19::chr9:123853258..123853276,-#_52b620a34b25e84ba426b68b5ad61be6p@chr9:123853258..123853276, -
3.29e-195FFCP PHASE2:Hg19::chr1:158580993..158580998,-#_52b620a34b25e84ba426b68b5ad61be6p@chr1:158580993..158580998, -
3.29e-195FFCP PHASE1:Hg19::chr18:11740276..11740278,+#_52b620a34b25e84ba426b68b5ad61be6p@chr18:11740276..11740278, +
3.29e-195FFCP PHASE1:Hg19::chr9:138852021..138852030,+#_52b620a34b25e84ba426b68b5ad61be6p@chr9:138852021..138852030, +
3.29e-195FFCP PHASE1:Hg19::chr11:57416011..57416016,+#_52b620a34b25e84ba426b68b5ad61be6p9@CLP1
3.29e-195FFCP PHASE2:Hg19::chr11:57416011..57416016,+#_52b620a34b25e84ba426b68b5ad61be6p9@CLP1
3.29e-195FFCP PHASE1:Hg19::chr13:106256314..106256318,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:106256314..106256318, +
3.29e-195FFCP PHASE1:Hg19::chr12:131245491..131245492,+#_52b620a34b25e84ba426b68b5ad61be6p@chr12:131245491..131245492, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585672..10585677,+#_52b620a34b25e84ba426b68b5ad61be6p42@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr9:138852021..138852030,+#_52b620a34b25e84ba426b68b5ad61be6p@chr9:138852021..138852030, +
3.29e-195FFCP PHASE1:Hg19::chr9:123853258..123853276,-#_52b620a34b25e84ba426b68b5ad61be6p@chr9:123853258..123853276, -
3.29e-195FFCP PHASE1:Hg19::chr4:26378984..26378987,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:26378984..26378987, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726589..49726592,+#_52b620a34b25e84ba426b68b5ad61be6p7@RNF123
3.29e-195FFCP PHASE1:Hg19::chr17:27188395..27188398,-#_52b620a34b25e84ba426b68b5ad61be6p1@MIR451A
3.29e-195FFCP PHASE2:Hg19::chr6:10585684..10585689,+#_52b620a34b25e84ba426b68b5ad61be6p37@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr11:115492263..115492265,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE1:Hg19::chr16:15616042..15616045,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:15616042..15616045, +
3.29e-195FFCP PHASE2:Hg19::chr4:26378984..26378987,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:26378984..26378987, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726589..49726592,+#_52b620a34b25e84ba426b68b5ad61be6p7@RNF123
3.29e-195FFCP PHASE1:Hg19::chr10:94679592..94679594,-#_52b620a34b25e84ba426b68b5ad61be6p@chr10:94679592..94679594, -
3.29e-195FFCP PHASE1:Hg19::chr2:112191654..112191660,-#_52b620a34b25e84ba426b68b5ad61be6p@chr2:112191654..112191660, -
3.29e-195FFCP PHASE2:Hg19::chr11:66676050..66676060,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:66676050..66676060, +
3.29e-195FFCP PHASE2:Hg19::chr13:78682773..78682778,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr2:112191654..112191660,-#_52b620a34b25e84ba426b68b5ad61be6p@chr2:112191654..112191660, -
3.29e-195FFCP PHASE1:Hg19::chr12:75560876..75560881,+#_52b620a34b25e84ba426b68b5ad61be6p@chr12:75560876..75560881, +
3.29e-195FFCP PHASE1:Hg19::chr1:25598961..25598966,+#_52b620a34b25e84ba426b68b5ad61be6p5@RHD
3.29e-195FFCP PHASE2:Hg19::chr14:55799575..55799582,+#_52b620a34b25e84ba426b68b5ad61be6p@chr14:55799575..55799582, +
3.29e-195FFCP PHASE1:Hg19::chr4:160049078..160049079,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:160049078..160049079, +
3.29e-195FFCP PHASE1:Hg19::chr14:96742091..96742094,-#_52b620a34b25e84ba426b68b5ad61be6p@chr14:96742091..96742094, -
3.29e-195FFCP PHASE2:Hg19::chr1:25598961..25598966,+#_52b620a34b25e84ba426b68b5ad61be6p5@RHD
3.29e-195FFCP PHASE2:Hg19::chr16:227522..227524,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:227522..227524, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585684..10585689,+#_52b620a34b25e84ba426b68b5ad61be6p37@GCNT2
3.29e-195FFCP PHASE1:Hg19::chr15:71406717..71406718,+#_52b620a34b25e84ba426b68b5ad61be6p@chr15:71406717..71406718, +
3.29e-195FFCP PHASE1:Hg19::chr8:101412217..101412218,+#_52b620a34b25e84ba426b68b5ad61be6p@chr8:101412217..101412218, +
3.29e-195FFCP PHASE1:Hg19::chr17:42366115..42366125,+#_52b620a34b25e84ba426b68b5ad61be6p@chr17:42366115..42366125, +
3.29e-195FFCP PHASE2:Hg19::chr4:160049078..160049079,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:160049078..160049079, +
3.29e-195FFCP PHASE1:Hg19::chr6:50700492..50700495,+#_52b620a34b25e84ba426b68b5ad61be6p@chr6:50700492..50700495, +
3.29e-195FFCP PHASE2:Hg19::chr8:101412217..101412218,+#_52b620a34b25e84ba426b68b5ad61be6p@chr8:101412217..101412218, +
3.29e-195FFCP PHASE1:Hg19::chr9:45465498..45465501,+#_52b620a34b25e84ba426b68b5ad61be6p@chr9:45465498..45465501, +
3.29e-195FFCP PHASE2:Hg19::chr6:50700492..50700495,+#_52b620a34b25e84ba426b68b5ad61be6p@chr6:50700492..50700495, +
3.29e-195FFCP PHASE2:Hg19::chr9:45465498..45465501,+#_52b620a34b25e84ba426b68b5ad61be6p@chr9:45465498..45465501, +
3.29e-195FFCP PHASE1:Hg19::chrX:107332036..107332041,+#_52b620a34b25e84ba426b68b5ad61be6p@chrX:107332036..107332041, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726593..49726603,+#_52b620a34b25e84ba426b68b5ad61be6p4@RNF123
3.29e-195FFCP PHASE1:Hg19::chr11:115492263..115492265,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE2:Hg19::chrX:107332036..107332041,+#_52b620a34b25e84ba426b68b5ad61be6p@chrX:107332036..107332041, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726593..49726603,+#_52b620a34b25e84ba426b68b5ad61be6p4@RNF123
3.29e-195FFCP PHASE1:Hg19::chr17:42343955..42343974,-#_52b620a34b25e84ba426b68b5ad61be6p@chr17:42343955..42343974, -

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