CL:0000625: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|id=CL:0000625 | |id=CL:0000625 | ||
|name=CD8-positive, alpha-beta T cell | |name=CD8-positive, alpha-beta T cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor." [GOC:add, GOC:tfm, ISBN:0781735149] | |def="A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor." [GOC:add, GOC:tfm, ISBN:0781735149] | ||
|xref= | |xref= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
| Line 20: | Line 19: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:25, 26 June 2012
| Name: | CD8-positive, alpha-beta T cell |
|---|---|
| Namespace: | cell;;efo |
| Definition: | "A T cell expressing an alpha-beta T cell receptor and the CD8 coreceptor." [GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"CD8-positive, alpha-beta T lymphocyte" EXACT [] "CD8-positive, alpha-beta T-cell" EXACT [] "CD8-positive, alpha-beta T-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000791(mature alpha-beta T cell) |
|---|
Children
| disjoint from: | CL:0000624 (CD4-positive, alpha-beta T cell) |
|---|---|
| derives from: | FF:0000030 (CD8-positive T cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11855-125A1 (Mouse CD8+ T Cells, donor1)
- 12148-128F6 (CD8+ T Cells (pluriselect), donor090325, donation1)
- 12171-128I2 (CD8+ T Cells (pluriselect), donor090325, donation2)
- 12186-129A8 (CD8+ T Cells (pluriselect), donor090309, donation1)
- 12191-129B4 (CD8+ T Cells (pluriselect), donor090309, donation2)
- 12196-129B9 (CD8+ T Cells (pluriselect), donor090309, donation3)
- 12201-129C5 (CD8+ T Cells (pluriselect), donor090612, donation1)
... further results Mouse (Mus musculus)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11855-125A1 (Mouse CD8+ T Cells, donor1)
- 12148-128F6 (CD8+ T Cells (pluriselect), donor090325, donation1)
- 12171-128I2 (CD8+ T Cells (pluriselect), donor090325, donation2)
- 12186-129A8 (CD8+ T Cells (pluriselect), donor090309, donation1)
- 12191-129B4 (CD8+ T Cells (pluriselect), donor090309, donation2)
- 12196-129B9 (CD8+ T Cells (pluriselect), donor090309, donation3)
- 12201-129C5 (CD8+ T Cells (pluriselect), donor090612, donation1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000625 (CD8-positive, alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.7e-137 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_7ac30c441e2df95da44bcec53a2a933c | p@chr2:87053288..87053295, - |
| 2.7e-137 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_7ac30c441e2df95da44bcec53a2a933c | p@chr2:87053288..87053295, - |
| 3.11e-137 | FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_b719999c57ab8645be360c471aa2b7c7 | p@chr6:128299606..128299618, + |
| 3.11e-137 | FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_b719999c57ab8645be360c471aa2b7c7 | p@chr11:122709344..122709378, + |
| 3.11e-137 | FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_b719999c57ab8645be360c471aa2b7c7 | p@chr11:122709344..122709378, + |
| 3.11e-137 | FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_b719999c57ab8645be360c471aa2b7c7 | p@chr6:128299606..128299618, + |
| 5.61e-135 | FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_cf75ac7c0185b3a0b4b53d945aeccba3 | p@chr12:10561626..10561641, - |
| 5.61e-135 | FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_cf75ac7c0185b3a0b4b53d945aeccba3 | p@chr12:10561626..10561641, - |
| 3.14e-109 | FFCP PHASE2:Hg19::chr2:107103805..107103824,+#_c402994f41084a934f25ffdf6fa42ed3 | p1@ENST00000303432, p1@ENST00000446559 |
| 3.14e-109 | FFCP PHASE1:Hg19::chr2:107103805..107103824,+#_c402994f41084a934f25ffdf6fa42ed3 | p1@ENST00000303432, p1@ENST00000446559 |
| 5.29e-105 | FFCP PHASE2:Hg19::chr19:30101122..30101134,+#_3f6a2ec1e24890d4d7c4397b8ce8a3a2 | p@chr19:30101122..30101134, + |
| 5.29e-105 | FFCP PHASE1:Hg19::chr19:30101122..30101134,+#_3f6a2ec1e24890d4d7c4397b8ce8a3a2 | p@chr19:30101122..30101134, + |
| 4.54e-103 | FFCP PHASE2:Hg19::chr2:87016482..87016502,-#_f5fbbdd9193f49240c12c5f99f9d26b6 | p@chr2:87016482..87016502, - |
| 4.54e-103 | FFCP PHASE1:Hg19::chr2:87016482..87016502,-#_f5fbbdd9193f49240c12c5f99f9d26b6 | p@chr2:87016482..87016502, - |
| 2.0e-99 | FFCP PHASE2:Hg19::chr6:112115162..112115173,-#_141f80606a1b59ef394d9016d0a77bca | p20@FYN |
| 2.0e-99 | FFCP PHASE1:Hg19::chr6:112115162..112115173,-#_141f80606a1b59ef394d9016d0a77bca | p20@FYN |
| 7.88e-97 | FFCP PHASE1:Hg19::chr2:87036803..87036819,+#_1dc9285c539a2ea01c95c0e9e78a794c | p@chr2:87036803..87036819, + |
| 7.88e-97 | FFCP PHASE2:Hg19::chr2:87036803..87036819,+#_1dc9285c539a2ea01c95c0e9e78a794c | p@chr2:87036803..87036819, + |
| 9.54e-96 | FFCP PHASE2:Hg19::chr2:87053338..87053349,-#_e8933279a8a6da5c757242cd51a0e0eb | p@chr2:87053338..87053349, - |
| 9.54e-96 | FFCP PHASE1:Hg19::chr2:87053338..87053349,-#_e8933279a8a6da5c757242cd51a0e0eb | p@chr2:87053338..87053349, - |
| 1.77e-94 | FFCP PHASE2:Hg19::chr2:87017652..87017670,-#_a767872230f9b9b71d15dd7a7d6e8f3c | p@chr2:87017652..87017670, - |
| 1.77e-94 | FFCP PHASE1:Hg19::chr2:87017652..87017670,-#_a767872230f9b9b71d15dd7a7d6e8f3c | p@chr2:87017652..87017670, - |
| 7.78e-92 | FFCP PHASE1:Hg19::chr6:128299556..128299563,+#_00455557450e9c37027fdee8057e1b02 | p@chr6:128299556..128299563, + |
| 7.78e-92 | FFCP PHASE2:Hg19::chr6:128299556..128299563,+#_00455557450e9c37027fdee8057e1b02 | p@chr6:128299556..128299563, + |
| 1.4e-91 | FFCP PHASE1:Hg19::chr22:23101972..23101984,-#_0a5b32decc3ed9dec056e74f35bd82ed | p@chr22:23101972..23101984, - |
| 1.4e-91 | FFCP PHASE2:Hg19::chr22:23101972..23101984,-#_0a5b32decc3ed9dec056e74f35bd82ed | p@chr22:23101972..23101984, - |
| 3.64e-90 | FFCP PHASE2:Hg19::chr15:44968000..44968011,-#_f070610f6baddb55ce84657b222ede20 | p7@PATL2 |
| 3.64e-90 | FFCP PHASE1:Hg19::chr15:44968000..44968011,-#_f070610f6baddb55ce84657b222ede20 | p7@PATL2 |
| 1.93e-89 | FFCP PHASE2:Hg19::chr11:2320600..2320611,+#_b1c8ae06f017c00973587beb7d6e8310 | p@chr11:2320600..2320611, + |
| 1.93e-89 | FFCP PHASE1:Hg19::chr11:2320600..2320611,+#_b1c8ae06f017c00973587beb7d6e8310 | p@chr11:2320600..2320611, + |
| 1.93e-89 | FFCP PHASE1:Hg19::chr2:107103861..107103870,+#_b1c8ae06f017c00973587beb7d6e8310 | p1@ENST00000417670 |
| 1.93e-89 | FFCP PHASE2:Hg19::chr2:107103861..107103870,+#_b1c8ae06f017c00973587beb7d6e8310 | p1@ENST00000417670 |
| 1.67e-88 | FFCP PHASE2:Hg19::chr17:2597530..2597548,-#_477bb6073e026027c9608d304927c02d | p10@KIAA0664 |
| 1.67e-88 | FFCP PHASE1:Hg19::chr17:2597530..2597548,-#_477bb6073e026027c9608d304927c02d | p10@KIAA0664 |
| 2.51e-88 | FFCP PHASE2:Hg19::chr2:87012395..87012400,-#_33b790d5f9d196780dea893f739445cc | p@chr2:87012395..87012400, - |
| 2.51e-88 | FFCP PHASE1:Hg19::chr2:87012395..87012400,-#_33b790d5f9d196780dea893f739445cc | p@chr2:87012395..87012400, - |
| 3.53e-88 | FFCP PHASE2:Hg19::chr7:38370595..38370606,-#_3b5dde25d5487f203a8f23036090271a | p2@uc010kxj.1 |
| 3.53e-88 | FFCP PHASE1:Hg19::chr7:38370595..38370606,-#_3b5dde25d5487f203a8f23036090271a | p2@uc010kxj.1 |
| 1.09e-87 | FFCP PHASE1:Hg19::chr12:10563996..10564002,-#_e277086a00cd52c85af54bfdb4497d0d | p@chr12:10563996..10564002, - |
| 1.09e-87 | FFCP PHASE2:Hg19::chr12:10563996..10564002,-#_e277086a00cd52c85af54bfdb4497d0d | p@chr12:10563996..10564002, - |
| 1.96e-86 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_d4f6073b7be3f176f2e0a0bfc96e35fa | p@chr5:35859622..35859626, + |
| 1.96e-86 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_d4f6073b7be3f176f2e0a0bfc96e35fa | p@chr5:35859622..35859626, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:52234220..52234222,+#_24def9c5d5bac93a144aefae263b33b2 | p@chr1:52234220..52234222, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:52234220..52234222,+#_24def9c5d5bac93a144aefae263b33b2 | p@chr1:52234220..52234222, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:67818825..67818832,-#_24def9c5d5bac93a144aefae263b33b2 | p9@Bend4 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:67818825..67818832,-#_24def9c5d5bac93a144aefae263b33b2 | p9@Bend4 |
| 6.42e-86 | FFCP PHASE2:Hg19::chr11:2320635..2320646,+#_ddc35828ff8ec1be1470497121c5bc40 | p@chr11:2320635..2320646, + |
| 6.42e-86 | FFCP PHASE1:Hg19::chr11:2320635..2320646,+#_ddc35828ff8ec1be1470497121c5bc40 | p@chr11:2320635..2320646, + |
| 4.04e-82 | FFCP PHASE2:Hg19::chr12:10752214..10752231,-#_a7714e3b4c85322ba5741d516d1fd3c7 | p1@ENST00000521068 |
| 4.04e-82 | FFCP PHASE1:Hg19::chr12:10752214..10752231,-#_a7714e3b4c85322ba5741d516d1fd3c7 | p1@ENST00000521068 |
| 8.74e-82 | FFCP PHASE2:Hg19::chr8:1806877..1806888,+#_48529751457fdbb7d10d530205019ed3 | p4@ARHGEF10 |
| 8.74e-82 | FFCP PHASE1:Hg19::chr8:1806877..1806888,+#_48529751457fdbb7d10d530205019ed3 | p4@ARHGEF10 |
| 3.56e-80 | FFCP PHASE1:Hg19::chr19:51875523..51875549,-#_1c6b32abdf281686486e6c8c4fb89372 | p@chr19:51875523..51875549, - |
| 3.56e-80 | FFCP PHASE2:Hg19::chr19:51875523..51875549,-#_1c6b32abdf281686486e6c8c4fb89372 | p@chr19:51875523..51875549, - |
| 5.19e-80 | FFCP PHASE2:Hg19::chr14:102180126..102180136,+#_4029a0e0b0aa4bf11ccc92623c8b159b | p@chr14:102180126..102180136, + |
| 5.19e-80 | FFCP PHASE1:Hg19::chr14:102180126..102180136,+#_4029a0e0b0aa4bf11ccc92623c8b159b | p@chr14:102180126..102180136, + |
| 2.7e-79 | FFCP PHASE2:Hg19::chr7:38403275..38403280,-#_0594e28f536e44ed5452cd52e5bf997f | p2@TRGV2 |
| 2.7e-79 | FFCP PHASE1:Hg19::chr7:38403275..38403280,-#_0594e28f536e44ed5452cd52e5bf997f | p2@TRGV2 |
| 9.2e-78 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_3d6ad27a28f819a667fb37b31c1549b6 | p@chr4:103551892..103551903, - |
| 9.2e-78 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_3d6ad27a28f819a667fb37b31c1549b6 | p@chr4:103551892..103551903, - |
| 1.49e-77 | FFCP PHASE2:Hg19::chr12:10548079..10548109,-#_738793da40e9803819618767dff1c3c2 | p@chr12:10548079..10548109, - |
| 1.49e-77 | FFCP PHASE1:Hg19::chr12:10548079..10548109,-#_738793da40e9803819618767dff1c3c2 | p@chr12:10548079..10548109, - |
| 4.25e-77 | FFCP PHASE2:Hg19::chr17:61517622..61517633,-#_e8bcbbfd2e265af5820a77c2abab2607 | p@chr17:61517622..61517633, - |
| 4.25e-77 | FFCP PHASE1:Hg19::chr17:61517622..61517633,-#_e8bcbbfd2e265af5820a77c2abab2607 | p@chr17:61517622..61517633, - |
| 7.19e-77 | FFCP PHASE2:Hg19::chr12:6884195..6884206,+#_2216abe6def7f1f784348400359a01d0 | p5@LAG3 |
| 7.19e-77 | FFCP PHASE1:Hg19::chr12:6884195..6884206,+#_2216abe6def7f1f784348400359a01d0 | p5@LAG3 |
| 3.18e-76 | FFCP PHASE2:Hg19::chr21:47844888..47844896,+#_5a8949b53d09b14e1cd3bd06e99f40d0 | p@chr21:47844888..47844896, + |
| 3.18e-76 | FFCP PHASE1:Hg19::chr21:47844888..47844896,+#_5a8949b53d09b14e1cd3bd06e99f40d0 | p@chr21:47844888..47844896, + |
| 1.32e-75 | FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_7fb3cc9c51eb368341e939e1ebeaeaff | p@chr16:57162957..57162973, + |
| 1.32e-75 | FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_7fb3cc9c51eb368341e939e1ebeaeaff | p@chr16:57162957..57162973, + |
| 1.6e-74 | FFCP PHASE2:Hg19::chr2:87053149..87053161,-#_d7e3c736fb0e650b9de5440401000ad3 | p@chr2:87053149..87053161, - |
| 1.6e-74 | FFCP PHASE1:Hg19::chr2:87053149..87053161,-#_d7e3c736fb0e650b9de5440401000ad3 | p@chr2:87053149..87053161, - |
| 2.41e-74 | FFCP PHASE2:Hg19::chr12:10548110..10548127,-#_dcd5924d9633fa5b50c61c177cefa1c4 | p@chr12:10548110..10548127, - |
| 2.41e-74 | FFCP PHASE1:Hg19::chr12:10548110..10548127,-#_dcd5924d9633fa5b50c61c177cefa1c4 | p@chr12:10548110..10548127, - |
| 8.97e-74 | FFCP PHASE1:Hg19::chr3:27754397..27754419,+#_90b265a1631e60aa1caa86f5b2b4f4bb | p@chr3:27754397..27754419, + |
| 8.97e-74 | FFCP PHASE2:Hg19::chr3:27754397..27754419,+#_90b265a1631e60aa1caa86f5b2b4f4bb | p@chr3:27754397..27754419, + |
| 2.92e-72 | FFCP PHASE1:Hg19::chr2:37827073..37827104,+#_48a6bf845b9ea8eed0c0a341b8de4491 | p3@ENST00000419425 |
| 2.92e-72 | FFCP PHASE2:Hg19::chr2:37827073..37827104,+#_48a6bf845b9ea8eed0c0a341b8de4491 | p3@ENST00000419425 |
| 3.94e-72 | FFCP PHASE2:Hg19::chr5:35817337..35817343,+#_2bea67903a0e7277cf6acff489df7d2d | p@chr5:35817337..35817343, + |
| 3.94e-72 | FFCP PHASE1:Hg19::chr5:35817337..35817343,+#_2bea67903a0e7277cf6acff489df7d2d | p@chr5:35817337..35817343, + |
| 4.51e-72 | FFCP PHASE1:Hg19::chr8:1806935..1806947,+#_96cf13bd64629afceb3854a683c7c32d | p3@ARHGEF10 |
| 4.51e-72 | FFCP PHASE2:Hg19::chr8:1806935..1806947,+#_96cf13bd64629afceb3854a683c7c32d | p3@ARHGEF10 |
| 4.7e-72 | FFCP PHASE1:Hg19::chr6:105901528..105901540,+#_1aa7166b2d9a51f6b62ac0fb689b009d | p@chr6:105901528..105901540, + |
| 4.7e-72 | FFCP PHASE2:Hg19::chr6:105901528..105901540,+#_1aa7166b2d9a51f6b62ac0fb689b009d | p@chr6:105901528..105901540, + |
| 4.72e-71 | FFCP PHASE2:Hg19::chr2:87088995..87089018,-#_a71bf3f0ef01a46c1b7e11dbded5f793 | p1@CD8B |
| 4.72e-71 | FFCP PHASE1:Hg19::chr2:87088995..87089018,-#_a71bf3f0ef01a46c1b7e11dbded5f793 | p1@CD8B |
| 1.12e-70 | FFCP PHASE1:Hg19::chr1:159772121..159772159,+#_5d1128a4c4e81ac1746e72385cd5375d | p2@FCRL6 |
| 1.12e-70 | FFCP PHASE2:Hg19::chr1:159772121..159772159,+#_5d1128a4c4e81ac1746e72385cd5375d | p2@FCRL6 |
| 4.02e-70 | FFCP PHASE2:Hg19::chr1:8986930..8986955,-#_5ae23af01ae051bd3931ab83abae4ada | p@chr1:8986930..8986955, - |
| 4.02e-70 | FFCP PHASE1:Hg19::chr1:8986930..8986955,-#_5ae23af01ae051bd3931ab83abae4ada | p@chr1:8986930..8986955, - |
| 4.32e-70 | FFCP PHASE2:Hg19::chr12:10562135..10562149,-#_0e3fa043fda4600bc614ec1be420d18f | p1@ENST00000539300, p1@ENST00000539370 |
| 4.32e-70 | FFCP PHASE1:Hg19::chr12:10562135..10562149,-#_0e3fa043fda4600bc614ec1be420d18f | p1@ENST00000539300, p1@ENST00000539370 |
| 4.77e-70 | FFCP PHASE1:Hg19::chr2:85922031..85922057,+#_a8324965f508630c691259cde5048d6d | p5@GNLY |
| 4.77e-70 | FFCP PHASE2:Hg19::chr2:85922031..85922057,+#_a8324965f508630c691259cde5048d6d | p5@GNLY |
| 1.06e-69 | FFCP PHASE2:Hg19::chr13:114920170..114920193,+#_f43da998daa3d7c821e25192745ed8e2 | p@chr13:114920170..114920193, + |
| 1.06e-69 | FFCP PHASE1:Hg19::chr13:114920170..114920193,+#_f43da998daa3d7c821e25192745ed8e2 | p@chr13:114920170..114920193, + |
| 5.65e-69 | FFCP PHASE2:Hg19::chr12:10725588..10725591,+#_0e027e050821ec31ea9e8ca8583ad065 | p@chr12:10725588..10725591, + |
| 5.65e-69 | FFCP PHASE1:Hg19::chr12:10725588..10725591,+#_0e027e050821ec31ea9e8ca8583ad065 | p@chr12:10725588..10725591, + |
| 8.29e-69 | FFCP PHASE2:Hg19::chr15:44969033..44969045,-#_c537e4a7dc0f85d5e786c03c78735ee4 | p4@PATL2 |
| 8.29e-69 | FFCP PHASE1:Hg19::chr15:44969033..44969045,-#_c537e4a7dc0f85d5e786c03c78735ee4 | p4@PATL2 |
