CL:0002372: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000515 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:03, 27 June 2012
| Name: | myotube |
|---|---|
| Namespace: | cell |
| Definition: | "A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse." [GOC:tfm, ISBN:0323052908] |
| Synonyms: |
"myotubule" EXACT [] "single cell sarcomere" EXACT [] "skeletal muscle fiber" EXACT [] |
| Alt_id: | CL:0000369 |
| Created by: | tmeehan |
| Creation date: | 2010-09-24T01:13:01Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000188(cell of skeletal muscle),CL:0000228(multinucleate cell),CL:0000737(striated muscle cell) |
|---|---|
| develops_from: | CL:0000515(skeletal muscle myoblast) |
Children
| is a: | FF:0000163 (myotubule derived from skeletal muscle cells) |
|---|---|
| derives from: | FF:0104975 (human myotube cell sample),FF:0200006 (myoblast differentiation to myotubes, control sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
- 13473-144I8 (Myoblast differentiation to myotubes)
- 13474-144I9 (Myoblast differentiation to myotubes)
- 13475-145A1 (Myoblast differentiation to myotubes)
- 13476-145A2 (Myoblast differentiation to myotubes)
- 13477-145A3 (Myoblast differentiation to myotubes)
- 13478-145A4 (Myoblast differentiation to myotubes)
... further results Mouse (Mus musculus)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
- 13473-144I8 (Myoblast differentiation to myotubes)
- 13474-144I9 (Myoblast differentiation to myotubes)
- 13475-145A1 (Myoblast differentiation to myotubes)
- 13476-145A2 (Myoblast differentiation to myotubes)
- 13477-145A3 (Myoblast differentiation to myotubes)
- 13478-145A4 (Myoblast differentiation to myotubes)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002372 (myotube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:106331633..106331642,+#_241ad9f2367a791451b2079501d6c856 | p15@ZFPM2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:106331633..106331642,+#_241ad9f2367a791451b2079501d6c856 | p15@ZFPM2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:186166946..186166955,-#_1f124d5461040fb9dd217358fe14b0b2 | p@chr1:186166946..186166955, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:21496498..21496503,-#_1f124d5461040fb9dd217358fe14b0b2 | p@chr9:21496498..21496503, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:130278144..130278146,+#_1f124d5461040fb9dd217358fe14b0b2 | p@chr4:130278144..130278146, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:21496498..21496503,-#_1f124d5461040fb9dd217358fe14b0b2 | p@chr9:21496498..21496503, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:130278144..130278146,+#_1f124d5461040fb9dd217358fe14b0b2 | p@chr4:130278144..130278146, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:26143606..26143611,+#_1f124d5461040fb9dd217358fe14b0b2 | p@chr4:26143606..26143611, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_1f124d5461040fb9dd217358fe14b0b2 | p15@HOXC10 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:43938419..43938424,-#_1f124d5461040fb9dd217358fe14b0b2 | p@chr13:43938419..43938424, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:186166946..186166955,-#_1f124d5461040fb9dd217358fe14b0b2 | p@chr1:186166946..186166955, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_1f124d5461040fb9dd217358fe14b0b2 | p15@HOXC10 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:43938419..43938424,-#_1f124d5461040fb9dd217358fe14b0b2 | p@chr13:43938419..43938424, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:26143606..26143611,+#_1f124d5461040fb9dd217358fe14b0b2 | p@chr4:26143606..26143611, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:224839996..224840004,-#_bfe7d799f8f18e5fe2e25dc774082245 | p46@SERPINE2 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:112635723..112635728,-#_bfe7d799f8f18e5fe2e25dc774082245 | p4@ENST00000451962 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:112635723..112635728,-#_bfe7d799f8f18e5fe2e25dc774082245 | p4@ENST00000451962 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:224839996..224840004,-#_bfe7d799f8f18e5fe2e25dc774082245 | p46@SERPINE2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:52288160..52288176,+#_55831c27f6467d4f9f4af86633ae302d | p@chr5:52288160..52288176, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:188050642..188050645,+#_55831c27f6467d4f9f4af86633ae302d | p@chr4:188050642..188050645, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:67872642..67872645,-#_55831c27f6467d4f9f4af86633ae302d | p@chr18:67872642..67872645, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr13:99963626..99963628,-#_55831c27f6467d4f9f4af86633ae302d | p@chr13:99963626..99963628, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:52288160..52288176,+#_55831c27f6467d4f9f4af86633ae302d | p@chr5:52288160..52288176, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:188050642..188050645,+#_55831c27f6467d4f9f4af86633ae302d | p@chr4:188050642..188050645, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:67872642..67872645,-#_55831c27f6467d4f9f4af86633ae302d | p@chr18:67872642..67872645, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr13:99963626..99963628,-#_55831c27f6467d4f9f4af86633ae302d | p@chr13:99963626..99963628, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:86954525..86954527,+#_97282cd26f7683548bd4e01d285b5257 | p@chr4:86954525..86954527, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:7222449..7222458,+#_97282cd26f7683548bd4e01d285b5257 | p10@C1GALT1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:7222449..7222458,+#_97282cd26f7683548bd4e01d285b5257 | p10@C1GALT1 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr16:2811988..2811995,+#_97282cd26f7683548bd4e01d285b5257 | p@chr16:2811988..2811995, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:86954525..86954527,+#_97282cd26f7683548bd4e01d285b5257 | p@chr4:86954525..86954527, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:92616200..92616202,+#_97282cd26f7683548bd4e01d285b5257 | p4@FAT3 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:92616200..92616202,+#_97282cd26f7683548bd4e01d285b5257 | p4@FAT3 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr16:2811988..2811995,+#_97282cd26f7683548bd4e01d285b5257 | p@chr16:2811988..2811995, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr18:19769123..19769149,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p@chr18:19769123..19769149, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:30865226..30865229,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p17@LCLAT1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr1:78353898..78353908,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p24@NEXN |
| 2.42e-50 | FFCP PHASE2:Hg19::chr1:78353898..78353908,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p24@NEXN |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:91874538..91874551,-#_2c673edc7190e6a11e4b6a2df00bb4e1 | p13@KRIT1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:80352456..80352465,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p10@ZFAND6 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:30865226..30865229,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p17@LCLAT1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:64774372..64774383,-#_2c673edc7190e6a11e4b6a2df00bb4e1 | p@chr11:64774372..64774383, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:91874538..91874551,-#_2c673edc7190e6a11e4b6a2df00bb4e1 | p13@KRIT1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:80352456..80352465,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p10@ZFAND6 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:64774372..64774383,-#_2c673edc7190e6a11e4b6a2df00bb4e1 | p@chr11:64774372..64774383, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr18:19769123..19769149,+#_2c673edc7190e6a11e4b6a2df00bb4e1 | p@chr18:19769123..19769149, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:117152220..117152232,+#_0d129808a327bf2d0cb52f5803dc3355 | p11@RNF214 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:114061988..114061990,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr3:114061988..114061990, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:131892954..131892969,+#_0d129808a327bf2d0cb52f5803dc3355 | p9@RAD50 |
| 3.99e-50 | FFCP PHASE1:Hg19::chrX:69722913..69722915,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chrX:69722913..69722915, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:117152220..117152232,+#_0d129808a327bf2d0cb52f5803dc3355 | p11@RNF214 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr18:55922965..55922972,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr18:55922965..55922972, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:6592942..6592947,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr4:6592942..6592947, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:131892954..131892969,+#_0d129808a327bf2d0cb52f5803dc3355 | p9@RAD50 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr13:26312285..26312294,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr13:26312285..26312294, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr8:107561486..107561489,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr8:107561486..107561489, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:7595050..7595057,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr7:7595050..7595057, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chrX:69722913..69722915,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chrX:69722913..69722915, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:110434870..110434880,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr4:110434870..110434880, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:89919893..89919905,-#_0d129808a327bf2d0cb52f5803dc3355 | p6@POC1B-GALNT4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr18:55922965..55922972,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr18:55922965..55922972, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:114720368..114720377,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr9:114720368..114720377, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr13:26312285..26312294,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr13:26312285..26312294, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:114061988..114061990,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr3:114061988..114061990, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:110434870..110434880,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr4:110434870..110434880, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:6592942..6592947,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr4:6592942..6592947, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr8:107561486..107561489,+#_0d129808a327bf2d0cb52f5803dc3355 | p@chr8:107561486..107561489, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:89919893..89919905,-#_0d129808a327bf2d0cb52f5803dc3355 | p6@POC1B-GALNT4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:7595050..7595057,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr7:7595050..7595057, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:114720368..114720377,-#_0d129808a327bf2d0cb52f5803dc3355 | p@chr9:114720368..114720377, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:112451000..112451011,-#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p7@TMEM116 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:123362263..123362276,+#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p@chr11:123362263..123362276, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:63560612..63560634,+#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p1@GUSBP6 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr21:46420365..46420376,+#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p@chr21:46420365..46420376, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:123362263..123362276,+#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p@chr11:123362263..123362276, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr15:35796430..35796456,-#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p@chr15:35796430..35796456, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr21:46420365..46420376,+#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p@chr21:46420365..46420376, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr15:35796430..35796456,-#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p@chr15:35796430..35796456, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:112451000..112451011,-#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p7@TMEM116 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:63560612..63560634,+#_68e9ae2bccfcdc06fa01b0c80e604ea3 | p1@GUSBP6 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr12:31882130..31882150,-#_2277549a7cf9d2d178064a7534972223 | p4@AMN1 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr3:51345332..51345335,+#_2277549a7cf9d2d178064a7534972223 | p@chr3:51345332..51345335, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr21:35340759..35340770,-#_2277549a7cf9d2d178064a7534972223 | p@chr21:35340759..35340770, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr12:31882130..31882150,-#_2277549a7cf9d2d178064a7534972223 | p4@AMN1 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr3:51345332..51345335,+#_2277549a7cf9d2d178064a7534972223 | p@chr3:51345332..51345335, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr21:35340759..35340770,-#_2277549a7cf9d2d178064a7534972223 | p@chr21:35340759..35340770, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr19:50529329..50529340,+#_e0fe45c565c5d04139547e1c0ed69e38 | p6@ZNF473 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr15:41786087..41786090,+#_e0fe45c565c5d04139547e1c0ed69e38 | p8@ITPKA |
| 1.48e-40 | FFCP PHASE1:Hg19::chr4:28866276..28866280,+#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr4:28866276..28866280, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr4:187526365..187526370,-#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr4:187526365..187526370, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr11:35110037..35110046,+#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr11:35110037..35110046, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr15:41786087..41786090,+#_e0fe45c565c5d04139547e1c0ed69e38 | p8@ITPKA |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:92213359..92213360,-#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr7:92213359..92213360, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr4:28866276..28866280,+#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr4:28866276..28866280, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr11:35110037..35110046,+#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr11:35110037..35110046, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:173650372..173650378,-#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr3:173650372..173650378, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr19:50529329..50529340,+#_e0fe45c565c5d04139547e1c0ed69e38 | p6@ZNF473 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr4:187526365..187526370,-#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr4:187526365..187526370, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:92213359..92213360,-#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr7:92213359..92213360, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:173650372..173650378,-#_e0fe45c565c5d04139547e1c0ed69e38 | p@chr3:173650372..173650378, - |
