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Revision as of 13:04, 27 June 2012

Name:amnion mesenchymal stem cell
Namespace:cell
Definition:"A mesenchymal stem cell of the amnion membrane." [GOC:tfm, PMID:20446274, PMID:21339039]
Synonyms: "amniotic membrane stem cell" EXACT []
Created by:tmeehan
Creation date:2011-02-28T12:44:24Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000134(mesenchymal cell),CL:0000349(extraembryonic cell)
part_of:UBERON:0000305(amnion)



Children


derives from:FF:0000092 (human amniotic membrane cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002537 (amnion mesenchymal stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-88FFCP PHASE2:Hg19::chr7:114542043..114542046,-#_d9b76d5547a0487fdec80ff0f05ccb99p@chr7:114542043..114542046, -
1.21e-88FFCP PHASE1:Hg19::chr7:114542043..114542046,-#_d9b76d5547a0487fdec80ff0f05ccb99p@chr7:114542043..114542046, -
3.49e-79FFCP PHASE2:Hg19::chr17:38859653..38859658,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p10@KRT24
3.49e-79FFCP PHASE1:Hg19::chr7:7310907..7310916,+#_e3ea09bccb9c579cdb5b0a57d9b04d74p4@ENST00000447039
3.49e-79FFCP PHASE2:Hg19::chr17:38858136..38858142,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr17:38858136..38858142, -
3.49e-79FFCP PHASE2:Hg19::chr5:59573885..59573903,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr5:59573885..59573903, -
3.49e-79FFCP PHASE2:Hg19::chr16:84889089..84889095,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr16:84889089..84889095, -
3.49e-79FFCP PHASE2:Hg19::chr17:38859399..38859408,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr17:38859399..38859408, -
3.49e-79FFCP PHASE1:Hg19::chrX:21444376..21444380,+#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chrX:21444376..21444380, +
3.49e-79FFCP PHASE2:Hg19::chr7:7310907..7310916,+#_e3ea09bccb9c579cdb5b0a57d9b04d74p4@ENST00000447039
3.49e-79FFCP PHASE1:Hg19::chr17:38859653..38859658,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p10@KRT24
3.49e-79FFCP PHASE1:Hg19::chr17:38858136..38858142,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr17:38858136..38858142, -
3.49e-79FFCP PHASE1:Hg19::chr16:84889089..84889095,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr16:84889089..84889095, -
3.49e-79FFCP PHASE1:Hg19::chr17:38859399..38859408,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr17:38859399..38859408, -
3.49e-79FFCP PHASE2:Hg19::chrX:21444376..21444380,+#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chrX:21444376..21444380, +
3.49e-79FFCP PHASE1:Hg19::chr5:59573885..59573903,-#_e3ea09bccb9c579cdb5b0a57d9b04d74p@chr5:59573885..59573903, -
1.56e-71FFCP PHASE1:Hg19::chr6:31084453..31084463,-#_6751421d279f58cd8cecdea66c161ab2p@chr6:31084453..31084463, -
1.56e-71FFCP PHASE2:Hg19::chr6:31084453..31084463,-#_6751421d279f58cd8cecdea66c161ab2p@chr6:31084453..31084463, -
1.98e-71FFCP PHASE1:Hg19::chr19:36594000..36594048,+#_df0bd2e3199438c7080a5cecc744f13ap1@BC128417
1.98e-71FFCP PHASE2:Hg19::chr19:36594000..36594048,+#_df0bd2e3199438c7080a5cecc744f13ap1@BC128417
6.03e-60FFCP PHASE2:Hg19::chr6:31085053..31085062,-#_f6ba42cc182eff2cf6dc105463968de4p@chr6:31085053..31085062, -
6.03e-60FFCP PHASE2:Hg19::chr11:1973029..1973054,+#_f6ba42cc182eff2cf6dc105463968de4p@chr11:1973029..1973054, +
6.03e-60FFCP PHASE2:Hg19::chr12:8975061..8975072,+#_f6ba42cc182eff2cf6dc105463968de4p5@A2ML1
6.03e-60FFCP PHASE1:Hg19::chr12:8975061..8975072,+#_f6ba42cc182eff2cf6dc105463968de4p5@A2ML1
6.03e-60FFCP PHASE1:Hg19::chr11:1973029..1973054,+#_f6ba42cc182eff2cf6dc105463968de4p@chr11:1973029..1973054, +
6.03e-60FFCP PHASE1:Hg19::chr6:31085053..31085062,-#_f6ba42cc182eff2cf6dc105463968de4p@chr6:31085053..31085062, -
7.37e-60FFCP PHASE1:Hg19::chr7:14880892..14880938,-#_3aa20115e08ad6aea9a32d436796254bp16@DGKB
7.37e-60FFCP PHASE2:Hg19::chr11:1949070..1949079,+#_3aa20115e08ad6aea9a32d436796254bp@chr11:1949070..1949079, +
7.37e-60FFCP PHASE2:Hg19::chr7:14880892..14880938,-#_3aa20115e08ad6aea9a32d436796254bp16@DGKB
7.37e-60FFCP PHASE1:Hg19::chr11:1949070..1949079,+#_3aa20115e08ad6aea9a32d436796254bp@chr11:1949070..1949079, +
9.01e-60FFCP PHASE2:Hg19::chr6:31083839..31083849,-#_5ef949e44fc14991494baad113892d54p@chr6:31083839..31083849, -
9.01e-60FFCP PHASE1:Hg19::chr6:31084485..31084501,-#_5ef949e44fc14991494baad113892d54p@chr6:31084485..31084501, -
9.01e-60FFCP PHASE2:Hg19::chr6:31084485..31084501,-#_5ef949e44fc14991494baad113892d54p@chr6:31084485..31084501, -
9.01e-60FFCP PHASE1:Hg19::chr6:31083839..31083849,-#_5ef949e44fc14991494baad113892d54p@chr6:31083839..31083849, -
2.01e-59FFCP PHASE2:Hg19::chr8:24049607..24049611,+#_09bb45a45ad7878c079e6f4a62333a77p@chr8:24049607..24049611, +
2.01e-59FFCP PHASE1:Hg19::chr8:24049607..24049611,+#_09bb45a45ad7878c079e6f4a62333a77p@chr8:24049607..24049611, +
2.46e-59FFCP PHASE1:Hg19::chr10:88734366..88734378,-#_36234c634e8c6c8ee021f17bb9d3d892p@chr10:88734366..88734378, -
2.46e-59FFCP PHASE2:Hg19::chr10:88734366..88734378,-#_36234c634e8c6c8ee021f17bb9d3d892p@chr10:88734366..88734378, -
2.19e-53FFCP PHASE1:Hg19::chr17:78682732..78682739,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr17:78682732..78682739, +
2.19e-53FFCP PHASE2:Hg19::chr19:15065060..15065084,-#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr19:15065060..15065084, -
2.19e-53FFCP PHASE1:Hg19::chr17:38859418..38859423,-#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr17:38859418..38859423, -
2.19e-53FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_f9ecb6b258594e3ebe22af717ca7a7a2p11@HTR2B
2.19e-53FFCP PHASE1:Hg19::chr16:812453..812461,+#_f9ecb6b258594e3ebe22af717ca7a7a2p20@MSLN
2.19e-53FFCP PHASE2:Hg19::chr17:38859468..38859474,-#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr17:38859468..38859474, -
2.19e-53FFCP PHASE2:Hg19::chr12:108238355..108238361,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr12:108238355..108238361, +
2.19e-53FFCP PHASE2:Hg19::chr13:68765236..68765243,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr13:68765236..68765243, +
2.19e-53FFCP PHASE2:Hg19::chr13:41935939..41935949,+#_f9ecb6b258594e3ebe22af717ca7a7a2p9@NAA16
2.19e-53FFCP PHASE1:Hg19::chr13:68765236..68765243,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr13:68765236..68765243, +
2.19e-53FFCP PHASE1:Hg19::chr13:41935939..41935949,+#_f9ecb6b258594e3ebe22af717ca7a7a2p9@NAA16
2.19e-53FFCP PHASE1:Hg19::chr9:92049035..92049042,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr9:92049035..92049042, +
2.19e-53FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_f9ecb6b258594e3ebe22af717ca7a7a2p11@HTR2B
2.19e-53FFCP PHASE1:Hg19::chr17:38859468..38859474,-#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr17:38859468..38859474, -
2.19e-53FFCP PHASE1:Hg19::chr19:15065060..15065084,-#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr19:15065060..15065084, -
2.19e-53FFCP PHASE2:Hg19::chr17:38859418..38859423,-#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr17:38859418..38859423, -
2.19e-53FFCP PHASE2:Hg19::chr9:92049035..92049042,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr9:92049035..92049042, +
2.19e-53FFCP PHASE2:Hg19::chr17:78682732..78682739,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr17:78682732..78682739, +
2.19e-53FFCP PHASE2:Hg19::chr16:812453..812461,+#_f9ecb6b258594e3ebe22af717ca7a7a2p20@MSLN
2.19e-53FFCP PHASE1:Hg19::chr12:108238355..108238361,+#_f9ecb6b258594e3ebe22af717ca7a7a2p@chr12:108238355..108238361, +
2.87e-53FFCP PHASE2:Hg19::chr1:43534539..43534544,+#_70e01019fe7a38580a650b52bd2157b7p@chr1:43534539..43534544, +
2.87e-53FFCP PHASE1:Hg19::chr3:56658899..56658908,-#_70e01019fe7a38580a650b52bd2157b7p@chr3:56658899..56658908, -
2.87e-53FFCP PHASE2:Hg19::chr3:56658899..56658908,-#_70e01019fe7a38580a650b52bd2157b7p@chr3:56658899..56658908, -
2.87e-53FFCP PHASE2:Hg19::chr16:75845678..75845682,+#_70e01019fe7a38580a650b52bd2157b7p@chr16:75845678..75845682, +
2.87e-53FFCP PHASE1:Hg19::chr16:75845678..75845682,+#_70e01019fe7a38580a650b52bd2157b7p@chr16:75845678..75845682, +
2.87e-53FFCP PHASE1:Hg19::chr1:43534539..43534544,+#_70e01019fe7a38580a650b52bd2157b7p@chr1:43534539..43534544, +
3.74e-53FFCP PHASE1:Hg19::chr1:799209..799212,+#_afbc4756d376a371e142dab32f72f3a1p@chr1:799209..799212, +
3.74e-53FFCP PHASE2:Hg19::chr1:799209..799212,+#_afbc4756d376a371e142dab32f72f3a1p@chr1:799209..799212, +
3.74e-53FFCP PHASE1:Hg19::chr19:9087492..9087495,-#_afbc4756d376a371e142dab32f72f3a1p@chr19:9087492..9087495, -
3.74e-53FFCP PHASE1:Hg19::chr12:40977355..40977359,+#_afbc4756d376a371e142dab32f72f3a1p@chr12:40977355..40977359, +
3.74e-53FFCP PHASE2:Hg19::chr19:9087492..9087495,-#_afbc4756d376a371e142dab32f72f3a1p@chr19:9087492..9087495, -
3.74e-53FFCP PHASE2:Hg19::chr12:40977355..40977359,+#_afbc4756d376a371e142dab32f72f3a1p@chr12:40977355..40977359, +
1.15e-51FFCP PHASE1:Hg19::chr10:125623630..125623648,-#_a11ca9fe1049ab1c6f8bc2caf1c97ab6p@chr10:125623630..125623648, -
1.15e-51FFCP PHASE2:Hg19::chr10:125623630..125623648,-#_a11ca9fe1049ab1c6f8bc2caf1c97ab6p@chr10:125623630..125623648, -
1.94e-51FFCP PHASE1:Hg19::chr11:1949831..1949837,+#_80854c574767d75041916ac23b107e4cp@chr11:1949831..1949837, +
1.94e-51FFCP PHASE2:Hg19::chr6:31083672..31083681,-#_80854c574767d75041916ac23b107e4cp@chr6:31083672..31083681, -
1.94e-51FFCP PHASE2:Hg19::chr11:2150347..2150380,+#_80854c574767d75041916ac23b107e4cp3@BC104421
1.94e-51FFCP PHASE1:Hg19::chr11:2150347..2150380,+#_80854c574767d75041916ac23b107e4cp3@BC104421
1.94e-51FFCP PHASE2:Hg19::chr11:1949831..1949837,+#_80854c574767d75041916ac23b107e4cp@chr11:1949831..1949837, +
1.94e-51FFCP PHASE1:Hg19::chr6:31083672..31083681,-#_80854c574767d75041916ac23b107e4cp@chr6:31083672..31083681, -
3.24e-51FFCP PHASE2:Hg19::chr18:67944406..67944410,+#_81ec5f2846efc327117c107a5f05b25fp@chr18:67944406..67944410, +
3.24e-51FFCP PHASE1:Hg19::chr18:67944406..67944410,+#_81ec5f2846efc327117c107a5f05b25fp@chr18:67944406..67944410, +
4.58e-51FFCP PHASE2:Hg19::chr2:72375820..72375849,-#_d75ec0bda650c3bbcdbada8668d7c6dap@chr2:72375820..72375849, -
4.58e-51FFCP PHASE1:Hg19::chr2:72375820..72375849,-#_d75ec0bda650c3bbcdbada8668d7c6dap@chr2:72375820..72375849, -
1.89e-45FFCP PHASE2:Hg19::chr6:143081372..143081388,-#_1bf5d902af59eed40b07bdfeedae931ap@chr6:143081372..143081388, -
1.89e-45FFCP PHASE2:Hg19::chr1:43537118..43537143,+#_1bf5d902af59eed40b07bdfeedae931ap@chr1:43537118..43537143, +
1.89e-45FFCP PHASE1:Hg19::chr10:125623682..125623706,-#_1bf5d902af59eed40b07bdfeedae931ap@chr10:125623682..125623706, -
1.89e-45FFCP PHASE1:Hg19::chr6:143081372..143081388,-#_1bf5d902af59eed40b07bdfeedae931ap@chr6:143081372..143081388, -
1.89e-45FFCP PHASE2:Hg19::chr10:125623682..125623706,-#_1bf5d902af59eed40b07bdfeedae931ap@chr10:125623682..125623706, -
1.89e-45FFCP PHASE1:Hg19::chr1:43537118..43537143,+#_1bf5d902af59eed40b07bdfeedae931ap@chr1:43537118..43537143, +
2.2e-45FFCP PHASE1:Hg19::chr3:174581572..174581585,+#_f9681ef3400ac6434a440195900d2501p6@NAALADL2
2.2e-45FFCP PHASE2:Hg19::chr3:174581572..174581585,+#_f9681ef3400ac6434a440195900d2501p6@NAALADL2
2.56e-45FFCP PHASE1:Hg19::chr6:31083856..31083866,-#_e2c6bfb361f0c53f99b7cd9f023d3db6p@chr6:31083856..31083866, -
2.56e-45FFCP PHASE2:Hg19::chr6:31083856..31083866,-#_e2c6bfb361f0c53f99b7cd9f023d3db6p@chr6:31083856..31083866, -
3.47e-45FFCP PHASE1:Hg19::chr19:9057024..9057060,-#_700bac545dfd4df841a39b60768a72c3p@chr19:9057024..9057060, -
3.47e-45FFCP PHASE2:Hg19::chr19:9057024..9057060,-#_700bac545dfd4df841a39b60768a72c3p@chr19:9057024..9057060, -
5.45e-45FFCP PHASE2:Hg19::chr15:39561631..39561642,-#_e3668c00d0c851f4ecd0d0a57ff324fdp@chr15:39561631..39561642, -
5.45e-45FFCP PHASE1:Hg19::chr15:39561631..39561642,-#_e3668c00d0c851f4ecd0d0a57ff324fdp@chr15:39561631..39561642, -
6.33e-45FFCP PHASE1:Hg19::chr3:123512832..123512846,-#_68670847018dcf721a5029a26fba9b2ep46@MYLK
6.33e-45FFCP PHASE2:Hg19::chr3:123512832..123512846,-#_68670847018dcf721a5029a26fba9b2ep46@MYLK
8.55e-45FFCP PHASE2:Hg19::chr12:72451186..72451196,-#_c86aa0edb4f38871d446e62eda073667p4@ENST00000548885
8.55e-45FFCP PHASE1:Hg19::chr12:72451186..72451196,-#_c86aa0edb4f38871d446e62eda073667p4@ENST00000548885

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