UBERON:0004290: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0002329 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0000926 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.[TAO]" xsd:string;;UBPROP:0000001 "Portion of somites that gives rise to dermis and muscles.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.[TAO]" xsd:string;;UBPROP:0000001 "Portion of somites that gives rise to dermis and muscles.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:36, 27 June 2012
| Name: | dermomyotome | ||
|---|---|---|---|
| Definition: | "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle." [1] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000486(multilaminar epithelium),UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue) |
|---|---|
| develops_from: | UBERON:0002329(somite) |
| part_of: | UBERON:0000926(mesoderm) |
Children
| develops from: | UBERON:0003082 (myotome),UBERON:0004016 (dermatome) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004290 (dermomyotome), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_f7e99a578d43c27774f3726f8fb5a1a2 | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_f7e99a578d43c27774f3726f8fb5a1a2 | p@chrX:160838683..160838694, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_a60d1496bc4aab84c37b8415c8693911 | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_a60d1496bc4aab84c37b8415c8693911 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_a60d1496bc4aab84c37b8415c8693911 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_a60d1496bc4aab84c37b8415c8693911 | p@chr12:105433069..105433075, - |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_2ae12c4882943100955c4760a952238f | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_2ae12c4882943100955c4760a952238f | p@chrX:160838787..160838800, + |
| 1.58e-44 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_e42f39b230ea5029a05064355f2fd14a | p8@ARHGAP22 |
| 1.58e-44 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_e42f39b230ea5029a05064355f2fd14a | p8@ARHGAP22 |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_8093a0cc22076698cba61785be47238a | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_8093a0cc22076698cba61785be47238a | p@chr11:81849982..81850000, + |
| 9.2e-41 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_17ae183b8b927f4c22cb87b3b4d3fc44 | p@chr6:53359400..53359406, + |
| 9.2e-41 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_17ae183b8b927f4c22cb87b3b4d3fc44 | p@chr6:53359400..53359406, + |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_1d3cdd94593eea3e18811bf907505f9c | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_1d3cdd94593eea3e18811bf907505f9c | p@chr17:14813242..14813246, - |
| 2.26e-39 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_8843bd75237737fc146add0431fb636e | p4@ARHGAP22 |
| 2.26e-39 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_8843bd75237737fc146add0431fb636e | p4@ARHGAP22 |
| 2.88e-39 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_fdaad45b1dd0ad4c9726524fb0c8e400 | p@chr9:35685631..35685657, + |
| 2.88e-39 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_fdaad45b1dd0ad4c9726524fb0c8e400 | p@chr9:35685631..35685657, + |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_c812dd376440b39fca3dd2283535ade0 | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_c812dd376440b39fca3dd2283535ade0 | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_7bae51bd046c6f52db4f5822358f645b | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_7bae51bd046c6f52db4f5822358f645b | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_7bae51bd046c6f52db4f5822358f645b | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_7bae51bd046c6f52db4f5822358f645b | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_7bae51bd046c6f52db4f5822358f645b | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_7bae51bd046c6f52db4f5822358f645b | p@chrX:160840048..160840057, + |
| 1.14e-38 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_995fa94c2dcc4f66384d2e76b996fa6d | p2@SASH1 |
| 1.14e-38 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_995fa94c2dcc4f66384d2e76b996fa6d | p2@SASH1 |
| 1.34e-36 | FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_428bde7139f6adec4813c3ca6f12bcd3 | p3@ARHGAP22 |
| 1.34e-36 | FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_428bde7139f6adec4813c3ca6f12bcd3 | p3@ARHGAP22 |
| 1.46e-35 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_c7319104c9586510bfc2da7028aa013a | p2@RCN3 |
| 1.46e-35 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_c7319104c9586510bfc2da7028aa013a | p2@RCN3 |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_f9094f06fa1bb885d03c1e0bc6d14fc8 | p11@Fam198b |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_f9094f06fa1bb885d03c1e0bc6d14fc8 | p11@Fam198b |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_01711157981cbdbfdbcd8867bf8b83b7 | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_01711157981cbdbfdbcd8867bf8b83b7 | p@chr1:127574253..127574264, + |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_de13765282b502309b95e7d22319f62f | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_de13765282b502309b95e7d22319f62f | p7@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_943641fa017f3ed02a1ce70092703177 | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_943641fa017f3ed02a1ce70092703177 | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_421d910ad575cb04fd384be4569aa88b | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_421d910ad575cb04fd384be4569aa88b | p@chrX:160839768..160839780, + |
| 9.95e-35 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_cfa8f338ff7077778b0053fd9949809e | p@chr9:35685445..35685517, + |
| 9.95e-35 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_cfa8f338ff7077778b0053fd9949809e | p@chr9:35685445..35685517, + |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_c1aba464e26c8f81be502dcae8358424 | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_c1aba464e26c8f81be502dcae8358424 | p8@Gpr39 |
| 1.89e-34 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_ba1e279e11726992186df50b2f998bb6 | p@chr9:35684475..35684520, + |
| 1.89e-34 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_ba1e279e11726992186df50b2f998bb6 | p@chr9:35684475..35684520, + |
| 4.48e-34 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_5e5890d7a7c8b6fb5ae19e6726834cd9 | p3@IFI27L2 |
| 4.48e-34 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_5e5890d7a7c8b6fb5ae19e6726834cd9 | p3@IFI27L2 |
| 5.0e-34 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_d5aba6dd7de1e6edcf885c6b4ee4484e | p2@LRRC17 |
| 5.0e-34 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_d5aba6dd7de1e6edcf885c6b4ee4484e | p2@LRRC17 |
| 2.06e-33 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_fdb6b929d478d513b502992ada56038a | p@chr9:35689148..35689192, + |
| 2.06e-33 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_fdb6b929d478d513b502992ada56038a | p@chr9:35689148..35689192, + |
| 7.56e-33 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_2c1c74c9c2d597d8baac414cc077fb18 | p1@LRRC17 |
| 7.56e-33 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_2c1c74c9c2d597d8baac414cc077fb18 | p1@LRRC17 |
| 1.21e-32 | FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_c8701f21ca9f345a68ad89fc67d9ec84 | p6@COL6A2 |
| 1.21e-32 | FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_c8701f21ca9f345a68ad89fc67d9ec84 | p6@COL6A2 |
| 2.74e-32 | FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_697eda78a9b92c40cff80623fe205b57 | p2@COL6A2 |
| 2.74e-32 | FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_697eda78a9b92c40cff80623fe205b57 | p2@COL6A2 |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_c7e3965288f753e7482cad1d47d443f8 | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_c7e3965288f753e7482cad1d47d443f8 | p@chr7:96658543..96658553, - |
| 5.83e-32 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_fb12423c0f8f4230bb820e620f22e54d | p@chr4:74703497..74703511, + |
| 5.83e-32 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_fb12423c0f8f4230bb820e620f22e54d | p@chr4:74703497..74703511, + |
| 9.0e-32 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_fc8f9e251e07d8447ec629d1b8536298 | p@chr2:134548872..134548879, - |
| 9.0e-32 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_fc8f9e251e07d8447ec629d1b8536298 | p@chr2:134548872..134548879, - |
| 9.7e-32 | FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_a4c664785fc7a308f0e4d1472bbbe021 | p@chr9:35685273..35685313, + |
| 9.7e-32 | FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_a4c664785fc7a308f0e4d1472bbbe021 | p@chr9:35685273..35685313, + |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_a55b6379ec8999787d761115fdab34ac | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_a55b6379ec8999787d761115fdab34ac | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_a55b6379ec8999787d761115fdab34ac | p2@Il6 |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_a55b6379ec8999787d761115fdab34ac | p2@Il6 |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_557d6c1081e34570c2d0ab6587b0f9eb | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_557d6c1081e34570c2d0ab6587b0f9eb | p@chr10:67598037..67598049, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_14bff7e5e0e2e8ac45412f1283c74450 | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_14bff7e5e0e2e8ac45412f1283c74450 | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_8ef370bcf8c3c16e19309bac0dd13c4d | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_8ef370bcf8c3c16e19309bac0dd13c4d | p@chr18:52678391..52678395, - |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_982b34d760ef5d0b61de8faca0dc0e2e | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_982b34d760ef5d0b61de8faca0dc0e2e | p@chr6:91222095..91222107, + |
| 9.72e-31 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_37861e5a52e7650b40692df20f90bcc5 | p2@ELTD1 |
| 9.72e-31 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_37861e5a52e7650b40692df20f90bcc5 | p2@ELTD1 |
| 1.01e-30 | FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_72f2550d5008889a47a410a7108e0edf | p@chr7:100773764..100773799, - |
| 1.01e-30 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_80ed2a43e0cf7fab99605b3e355d7503 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_80ed2a43e0cf7fab99605b3e355d7503 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_72f2550d5008889a47a410a7108e0edf | p@chr7:100773764..100773799, - |
| 1.17e-30 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_91d04565b47cc893d9f7173212cfa8a7 | p6@Gpr39 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_91d04565b47cc893d9f7173212cfa8a7 | p6@Gpr39 |
| 1.26e-30 | FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_f665d0d40d2b4ca06821a36da4ec9299 | p1@AK074416 |
| 1.26e-30 | FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_f665d0d40d2b4ca06821a36da4ec9299 | p1@AK074416 |
| 1.4e-30 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_ae86487b2ee0827c19fe399f5231cfe8 | p1@CU675118 |
| 1.4e-30 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_ae86487b2ee0827c19fe399f5231cfe8 | p1@CU675118 |
| 1.8e-30 | FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_1a41a130f12983f4998721127658d2b3 | p8@COL6A2 |
| 1.8e-30 | FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_1a41a130f12983f4998721127658d2b3 | p8@COL6A2 |
| 2.01e-30 | FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_4f6077937802e9959ce69d228aff7ba4 | p2@LTBP1 |
| 2.01e-30 | FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_4f6077937802e9959ce69d228aff7ba4 | p2@LTBP1 |
| 3.87e-30 | FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_a14f78909b41eb853a2fcc86ce839b6f | p@chr21:47542827..47542859, - |
| 3.87e-30 | FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_a14f78909b41eb853a2fcc86ce839b6f | p@chr21:47542827..47542859, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of somites that gives rise to dermis and muscles.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
