FF:10823-111C4: Difference between revisions

Revision as of 13:26, 29 June 2012

Name:	B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3
Species:
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	NA
cell type	b cell
cell line	GM12878
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102062 B-lymphoblastoid cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000034 (stem cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000838 (lymphoid lineage restricted progenitor cell)
0002031 (hematopoietic lineage restricted progenitor cell)
0000037 (hematopoietic stem cell)
0000566 (angioblastic mesenchymal cell)
0000837 (hematopoietic multipotent progenitor cell)
0000826 (pro-B cell)
0000051 (common lymphoid progenitor)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.60!396.47!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.42!264.31!PLEK;;chr11:111249993..111250006,-!p1@POU2AF1!2.40!250.46!POU2AF1;;chr19:50922187..50922204,+!p1@SPIB!2.08!119.64!SPIB;;chr16:85932760..85932775,+!p1@IRF8!2.02!104.92!IRF8;;chr1:25291475..25291511,-!p2@RUNX3!2.01!101.46!RUNX3;;chr12:103351444..103351461,+!p1@ASCL1!1.98!94.85!ASCL1;;chr3:27763807..27763822,-!p1@EOMES!1.91!80.99!EOMES;;chr17:38020392..38020477,-!p1@IKZF3!1.87!73.83!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.85!69.11!SP140;;chr2:231090471..231090504,+!p2@SP140!1.77!57.54!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.69!88.23!RUNX3;;chr7:28610099..28610113,+!p5@CREB5!1.67!45.57!CREB5;;chr2:68592394..68592405,+!p2@PLEK!1.60!38.96!PLEK;;chr10:64576105..64576133,-!p1@EGR2!1.57!72.57!EGR2;;chr19:36204309..36204335,+!p1@ZBTB32!1.57!36.21!ZBTB32;;chr1:158978768..158978800,+!p8@IFI16!1.53!32.74!IFI16;;chr3:189349162..189349207,+!p2@TP63!1.53!32.74!TP63;;chr8:76319876..76319926,+!p1@HNF4G!1.51!31.33!HNF4G;;chr3:27764190..27764208,-!p2@EOMES!1.50!30.93!EOMES;;chr5:88120151..88120177,-!p6@MEF2C!1.46!27.86!MEF2C;;chr12:103352277..103352324,+!p2@ASCL1!1.46!27.78!ASCL1;;chr17:36105042..36105060,-!p1@HNF1B!1.46!27.63!HNF1B;;chr14:75988771..75988826,+!p1@BATF!1.45!36.21!BATF;;chr1:3569072..3569093,+!p1@TP73!1.44!26.76!TP73;;chr20:50159198..50159299,-!p1@NFATC2!1.42!36.84!NFATC2;;chr19:42636586..42636607,-!p1@POU2F2!1.38!62.73!POU2F2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!23.14!ZBED1;;chr7:50348268..50348366,+!p4@IKZF1!1.38!22.90!IKZF1;;chr17:45810594..45810608,+!p1@TBX21!1.37!22.20!TBX21;;chr9:37034469..37034474,-!p1@PAX5!1.36!22.04!PAX5;;chr11:61520075..61520136,+!p1@C11orf9!1.32!41.24!C11orf9;;chr4:185395590..185395627,-!p3@IRF2!1.32!24.79!IRF2;;chr8:72756637..72756664,-!p3@MSC!1.32!22.75!MSC;;chr11:47400078..47400106,-!p1@SPI1!1.32!20.07!SPI1;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.32!19.99!MEF2B;;chr18:52989031..52989079,-!p2@TCF4!1.28!41.80!TCF4;;chr8:72756667..72756736,-!p2@MSC!1.23!24.95!MSC;;chr8:76319850..76319870,+!p4@HNF4G!1.23!16.06!HNF4G;;chr5:158526917..158526932,-!p1@EBF1!1.22!38.25!EBF1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.21!21.17!NFKBIZ;;chr5:142780237..142780261,-!p7@NR3C1!1.21!15.03!NR3C1;;chr7:28610060..28610073,+!p9@CREB5!1.20!14.72!CREB5;;chr8:135614084..135614119,-!p4@ZFAT!1.19!14.33!ZFAT;;chr9:1050331..1050363,+!p1@DMRT2!1.16!13.46!DMRT2;;chr13:41593425..41593480,-!p1@ELF1!1.15!82.65!ELF1;;chr5:88178983..88179012,-!p1@MEF2C!1.14!99.18!MEF2C;;chr6:34204973..34204990,+!p4@HMGA1!1.13!166.32!HMGA1;;chr5:133450365..133450444,+!p1@TCF7!1.13!56.51!TCF7;;chr14:75988831..75988847,+!p2@BATF!1.13!12.52!BATF;;chr2:68615031..68615055,+!p3@PLEK!1.13!12.36!PLEK;;chr11:19262421..19262455,-!p3@E2F8!1.12!12.20!E2F8;;chr2:214015343..214015366,-!p3@IKZF2!1.10!11.49!IKZF2;;chr3:141105705..141105770,+!p4@ZBTB38!1.09!13.77!ZBTB38;;chr2:214015111..214015179,-!p1@IKZF2!1.07!19.52!IKZF2;;chr12:54447599..54447630,+!p3@HOXC4!1.07!13.38!HOXC4;;chr2:231090344..231090361,-!p3@SP110!1.07!10.86!SP110;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.39!IKZF1;;chr19:45579725..45579743,-!p1@ZNF296!1.05!46.83!ZNF296;;chr17:1959369..1959388,+!p2@HIC1!1.04!26.76!HIC1;;chr7:128577972..128578047,+!p1@IRF5!1.04!15.98!IRF5;;chr3:141747950..141748004,-!p7@TFDP2!1.04!10.07!TFDP2;;chr9:117150254..117150271,-!p1@AKNA!1.03!27.08!AKNA;;chr6:135502408..135502459,+!p2@MYB!1.03!11.41!MYB;;chr1:25291620..25291635,-!p4@RUNX3!1.02!9.37!RUNX3;;chr16:85936539..85936562,+!p3@IRF8!1.02!9.37!IRF8;;chr11:615570..615721,-!p2@IRF7!1.01!18.58!IRF7;;chr17:37934204..37934241,-!p3@IKZF3!1.00!9.05!IKZF3;;chr1:167298300..167298319,+!p2@POU2F1!1.00!9.05!POU2F1;;chr1:170632115..170632136,+!p9@PRRX1!1.00!9.05!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.99!40.61!TOX2;;chr7:50344289..50344323,+!p1@IKZF1!0.99!8.82!IKZF1;;chr16:85936412..85936431,+!p2@IRF8!0.99!8.74!IRF8;;chr8:72756063..72756125,-!p1@MSC!0.98!17.47!MSC;;chr1:23857698..23857733,-!p1@E2F2!0.98!15.98!E2F2;;chr9:126774018..126774055,+!p1@LHX2!0.98!8.66!LHX2;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.58!IKZF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.98!8.50!CREB3L2;;chr9:126773880..126773895,+!p2@LHX2!0.98!8.50!LHX2;;chr20:42295713..42295738,+!p2@MYBL2!0.97!50.69!MYBL2;;chr1:38512457..38512474,-!p1@POU3F1!0.96!8.97!POU3F1;;chr7:137620684..137620711,-!p4@CREB3L2!0.96!8.19!CREB3L2;;chr1:158979686..158979745,+!p1@IFI16!0.95!269.27!IFI16;;chr4:185395633..185395651,-!p2@IRF2!0.95!12.75!IRF2;;chr10:104155480..104155534,+!p2@NFKB2!0.94!51.32!NFKB2;;chr2:214016254..214016282,-!p7@IKZF2!0.94!7.71!IKZF2;;chr19:42627037..42627084,-!p3@POU2F2!0.94!7.71!POU2F2;;chr1:151319654..151319698,-!p2@RFX5!0.93!17.00!RFX5;;chr5:142780189..142780223,-!p6@NR3C1!0.93!7.56!NR3C1;;chr1:92951607..92951661,-!p1@GFI1!0.93!7.48!GFI1;;chr17:36105074..36105086,-!p2@HNF1B!0.92!7.40!HNF1B;;chr17:38020557..38020572,-!p4@IKZF3!0.92!7.40!IKZF3;;chr18:52989001..52989030,-!p10@TCF4!0.91!8.0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FF:10823-111C4: Difference between revisions

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Revision as of 13:26, 29 June 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0