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MacroAPE 1083:AGKAGGACCA,motif546: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;238.128;89.216;0.328;0.328!2;33.784;58.712;143.336;92.168!3;13.776;80.032;99.384;134.808!4;132.184;58.056;79.048;58.712!5;0.328;44.608;236.1...")
 
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1C9;0.898585!10788-110H5;0.905026!10792-110H9;0.873012!10765-110E9;0.978859!10829-111D1;0.84219!10830-111D2;0.970057!10831-111D3;0.811148!10832-111D4;0.435388!10833-111D5;0.96854!10764-110E8;0.856695!10770-110F5;0.631476!10399-106A3;0.624168!10400-106A4;0.717817!10405-106A9;0.713708!10834-111D6;0.787148!10835-111D7;0.903456!10836-111D8;0.249504!10837-111D9;0.397841!10699-109G6;0.77945!10802-111A1;0.237884!10796-110I4;0.442505!10010-101C1;0.895003!10810-111A9;0.585255!10421-106C7;0.577199!10708-109H6;0.726778!12235-129G3;0.637396!12236-129G4;0.240556!12237-129G5;0.155371!10167-103B5;0.259059!10151-102I7;0.831509!10428-106D5;0.658294!10795-110I3;0.280244!10805-111A4;0.879928!10052-101G7;0.15151!10189-103D9;0.94147!10589-108D4;0.938711!10425-106D2;0.527064!10427-106D4;0.76109!10702-109G9;0.327587!10432-106D9;0.104375!10496-107C1;0.966002!10718-109I7;0.552777!10011-101C2;0.675659!10053-101G8;0.860892!10686-109F2;0.81801!10084-102B3;0.901799!10012-101C3;0.661629!10085-102B4;0.606419!10482-107A5;0.796031!10419-106C5;0.230646!10080-102A8;0.201414!10760-110E4;0.667082!10709-109H7;0.826841!10710-109H8;0.47728!10703-109H1;0.564487!10719-109I8;0.202462!10642-109A3;0.111605!10177-103C6;0.487322!10164-103B2;0.791153!10173-103C2;0.613115!10166-103B4;0.685175!10083-102B2;0.73526!10188-103D8;0.83692!10552-107I3;0.842768!10553-107I4;0.873918!10013-101C4;0.979422!10536-107G5;0.91891!10618-108G6;0.488671!10423-106C9;0.263808!10785-110H2;0.396167!12238-129G6;0.176132!12239-129G7;0.215665!12240-129G8;0.55692!10416-106C2;0.983656!10801-110I9;0.721269!10766-110F1;0.857463!10824-111C5;0.808753!10825-111C6;0.266629!10826-111C7;0.3191!10454-106G4;0.273037!10409-106B4;0.497471!10638-108I8;0.691584!10636-108I6;0.21872!10513-107D9;0.292384!10420-106C6;0.429056!10082-102B1;0.17301!10014-101C5;0.962737!10070-101I7;0.701668!10452-106G2;0.780456!10453-106G3;0.140065!10449-106F8;0.363814!10042-101F6;0.395141!10069-101I6;0.719157!10193-103E4;0.891638!10631-108I1;0.778054!10438-106E6;0.150024!10488-107B2;0.971801!10196-103E7;0.950385!10071-101I8;0.162497!10071-101I8;0.450351!10041-101F5;0.972905!10451-106G1;0.325334!10450-106F9;0.270603!10604-108F1;0.188343!10605-108F2;0.323138!10606-108F3;0.278496!10603-108E9;0.192899!10497-107C2;0.395847!10448-106F7;0.35391!10643-109A4;0.857547!10426-106D3;0.347198!10431-106D8;0.359781!10197-103E8;0.853601!10443-106F2;0.879227!10815-111B5;0.655727!10816-111B6;0.869102!10817-111B7;0.804473!10015-101C6;0.918392!10410-106B5;0.800965!10054-101G9;0.595621!10758-110E2;0.738898!10711-109H9;0.330232!10040-101F4;0.491782!10470-106I2;0.711478!10415-106C1;0.339072!10198-103E9;0.789245!10614-108G2;0.573804!10612-108F9;0.66626!10549-107H9;0.781209!10615-108G3;0.369405!10487-107B1;0.466428!10433-106E1;0.218892!10688-109F4;0.497337!10444-106F3;0.475471!10444-106F3;0.532056!10485-107A8;0.561811!10413-106B8;0.168404!10175-103C4;0.145209!10161-103A8;0.95107!12131-128D7;0.670135!10624-108H3;0.665457!10712-109I1;0.744388!10205-103F7;0.0739835!10206-103F8;0.868168!10207-103F9;0.605927!10050-101G5;0.249859!10051-101G6;0.582627!10016-101C7;0.703077!10046-101G1;0.534338!10778-110G4;0.322734!10633-108I3;0.432138!10818-111B8;0.057154!10819-111B9;0.835842!10820-111C1;0.711042!10484-107A7;0.683287!10808-111A7;0.628801!10169-103B7;0.854837!10153-102I9;0.688132!13425-144D5;0.670132!13433-144E4;0.0405596!13437-144E8;0.143512!11904-125F5;0.0942605!11905-125F6;0.869375!10039-101F3;0.895459!10791-110H8;0.694733!10017-101C8;0.49775!10045-101F9;0.799912!10509-107D5;0.487923!10839-111E2;0.759638!10692-109F8;0.762408!10079-102A7;0.925341!10078-102A6;0.968489!10721-110A1;0.819311!10569-108B2;0.861513!10570-108B3;0.16246!10571-108B4;0.0714549!10647-109A8;0.323807!10752-110D5;0.663017!10782-110G8;0.730113!10726-110A6;0.870828!10018-101C9;0.952083!10086-102B5;0.906532!10182-103D2;0.256353!10165-103B3;0.968285!10499-107C4;0.782796!10408-106B3;0.377751!10019-101D1;0.852419!10068-101I5;0.853968!10075-102A3;0.847934!10077-102A5;0.92725!10727-110A7;0.0391583!10775-110G1;0.380651!10412-106B7;0.842152!12231-129F8;0.648785!12232-129F9;0.294323!12233-129G1;0.604248!12234-129G2;0.432939!10414-106B9;0.369437!10170-103B8;0.360788!10183-103D3;0.846642!10150-102I6;0.757168!10174-103C3;0.72272!10155-103A2;0.851949!10038-101F2;0.929881!10838-111E1;0.743383!10759-110E3;0.00472718!10514-107E1;0.167829!10465-106H6;0.0801508!10691-109F7;0.222405!10843-111E6;0.706494!10844-111E7;0.218099!11747-123G1;0.259189!11748-123G2;0.690053!11749-123G3;0.359001!11750-123G4;0.231241!11751-123G5;0.954178!11840-124H4;0.528979!11752-123G6;0.115027!11753-123G7;0.336894!11754-123G8;0.560606!11755-123G9;0.732947!11756-123H1;0.627291!11833-124G6;0.688881!11760-123H5;0.577816!11836-124G9;0.993489!11758-123H3;0.371461!11835-124G8;0.478543!11762-123H7;0.145939!11838-124H2;0.199352!11757-123H2;0.205738!11759-123H4;0.967747!11761-123H6;0.836138!11842-124H6;0.606088!11837-124H1;0.62957!10568-108B1;0.314903!13230-141I8;0.613033!13231-141I9;0.396387!10696-109G3;0.432277!10493-107B7;0.786893!10494-107B8;0.144493!10850-111F4;0.672958!10851-111F5;0.65462!10852-111F6;0.584677!10853-111F7;0.959159!10854-111F8;0.461333!10855-111F9;0.929732!10856-111G1;0.919384!10847-111F1;0.607877!10846-111E9;0.796962!10848-111F2;0.702886!10845-111E8;0.746854!10857-111G2;0.0751786!10858-111G3;0.781765!10156-103A3;0.457207!11901-125F2;0.728738!11902-125F3;0.760656!11903-125F4;0.740693!10689-109F5;0.742065!10648-109A9;0.661244!10784-110H1;0.706344!10744-110C6;0.931072!10772-110F7;0.308314!10474-106I6;0.714887!10600-108E6;0.68917!10684-109E9;0.996515!12226-129F3;0.529371!12227-129F4;0.912813!10508-107D4;0.920922!10539-107G8;0.146757!10607-108F4;0.0320944!10555-107I6;0.221853!10774-110F9;0.18972!10637-108I7;0.399727!10663-109C6;0.00888629!10728-110A8;0.0944504!10729-110A9;0.0219998!10430-106D7;0.624911!10730-110B1;0.12871!10813-111B3;0.85106!10812-111B2;0.392765!10037-101F1;0.390202!10172-103C1;0.67873!10163-103B1;0.952705!10076-102A4;0.751831!10073-102A1;0.77391!10036-101E9;0.970439!10195-103E6;0.671519!10277-104E7;0.65408!10434-106E2;0.412149!10550-107I1;0.218918!10545-107H5;0.233162!10544-107H4;0.765149!10704-109H2;0.853318!10510-107D6;0.197514!10558-107I9;0.141226!10020-101D2;0.100986!10732-110B3;0.348659!10049-101G4;0.27799!10698-109G5;0.581658!10437-106E5;0.20295!10417-106C3;0.65641!10035-101E8;0.872716!10171-103B9;0.708291!10157-103A4;0.755029!10034-101E7;0.724622!10072-101I9;0.685956!10199-103F1;0.783246!10200-103F2;0.740769!10697-109G4;0.957311!10723-110A3;0.109218!10179-103C8;0.31396!10160-103A7;0.493426!10180-103C9;0.660864!10162-103A9;0.790556!10021-101D3;0.960237!10840-111E3;0.258958!10706-109H4;0.8109!10033-101E6;0.463831!10032-101E5;0.852468!10490-107B4;0.670042!10439-106E7;0.110852!10022-101D4;0.783751!10176-103C5;0.808263!10469-106I1;0.812535!10067-101I4;0.395862!10411-106B6;0.932942!10471-106I3;0.202733!10030-101E3;0.489983!10475-106I7;0.990726!10787-110H4;0.320725!10477-106I9;0.645003!10695-109G2;0.0691693!11771-123I7;0.814841!11772-123I8;0.956155!11773-123I9;0.718725!10093-102C3;0.585239!10442-106F1;0.801161!10442-106F1;0.653594!10201-103F3;0.525269!10639-108I9;0.469768!11843-124H7;0.343754!11841-124H5;0.917556!10693-109F9;0.470188!10436-106E4;0.436191!10483-107A6;0.925698!10282-104F3;0.658705!10023-101D5;0.437252!10066-101I3;0.492291!10065-101I2;0.971032!10800-110I8;0.801779!10610-108F7;0.507448!10841-111E4;0.407177!10541-107H1;0.278675!10842-111E5;0.0302517!10562-108A4;0.0629857!10024-101D6;0.729512!10064-101I1;0.37644!10609-108F6;0.408613!10048-101G3;0.875468!10781-110G7;0.808498!10181-103D1;0.626708!10159-103A6;0.96958!10056-101H2;0.786762!10737-110B8;0.55873!10025-101D7;0.700692!10044-101F8;0.597584!10424-106D1;0.918297!10463-106H4;0.582274!10616-108G4;0.592289!10486-107A9;0.724197!10062-101H8;0.49492!10202-103F4;0.523429!10158-103A5;0.973982!10441-106E9;0.963302!10031-101E4;0.0868829!10063-101H9;0.589799!10063-101H9;0.929708!11763-123H8;0.538092!11765-123I1;0.0877819!11768-123I4;0.0895483!10807-111A6;0.256141!10790-110H7;0.17284!10798-110I6;0.0521657!10786-110H3;0.197952!10591-108D6;0.287808!10593-108D8;0.328855!10590-108D5;0.494441!10026-101D8;0.134545!10096-102C6;0.311485!10168-103B6;0.00656392!10154-103A1;0.955836!10209-103G2;0.807055!10061-101H7;0.900156!10027-101D9;0.564683!10043-101F7;0.0148922!10783-110G9;0.28309!10028-101E1;0.726454!10060-101H6;0.318629!10203-103F5;0.516761!10059-101H5;0.713482!10047-101G2;0.878959!10029-101E2;0.311527!10058-101H4;0.534693!10418-106C4;0.793148!10492-107B6;0.171722!10694-109G1;0.85826!10797-110I5;0.447985!10057-101H3;0.90361!10100-102D1;0.571422!10055-101H1;0.831213!10204-103F6;0.949507!10191-103E2;0.800604!10563-108A5;0.852086
|name=AGKAGGACCA,motif546,CNhs12639,T:328.0(9.62%),B:3566.5(4.78%),P:1e-31
|name=AGKAGGACCA,motif546,CNhs12639,T:328.0(9.62%),B:3566.5(4.78%),P:1e-31
|tomtom_result=Tal1::Gata1#MA0140.1;7;0.00718962;3.42226;1;10;AGTAGGACCA;CTTATCTGTCCCCACCAG;-!HAP3#MA0314.1;-1;0.0102184;4.86397;1;9;AGTAGGACCA;TCTGAACCAATCAGA;-!ESR2#MA0258.1;7;0.0156385;7.44391;1;10;AGTAGGACCA;CAAGGTCACGGTGACCTG;+!OPI1#MA0349.1;-3;0.0186573;8.88087;1;7;AGTAGGACCA;CGAACCG;+
}}
}}

Latest revision as of 12:00, 7 September 2012

Full Name: AGKAGGACCA,motif546,CNhs12639,T:328.0(9.62%),B:3566.5(4.78%),P:1e-31

Motif matrix
POACGT
1238.12889.2160.3280.328
233.78458.712143.33692.168
313.77680.03299.384134.808
4132.18458.05679.04858.712
50.32844.608236.1646.904
658.38482187.2880.328
7191.22485.60817.05634.112
80.328174.49670.84882.328
90.328306.3520.32820.992
10211.5648.54467.5680.328

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Tal1::Gata1#MA0140.170.007189623.42226110AGTAGGACCACTTATCTGTCCCCACCAG-
HAP3#MA0314.1-10.01021844.8639719AGTAGGACCATCTGAACCAATCAGA-
ESR2#MA0258.170.01563857.44391110AGTAGGACCACAAGGTCACGGTGACCTG+
OPI1#MA0349.1-30.01865738.8808717AGTAGGACCACGAACCG+
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