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MacroAPE 1083:MCR f1: Difference between revisions

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1C9;0.998943!10788-110H5;0.820391!10792-110H9;0.479496!10765-110E9;0.421187!10829-111D1;0.872085!10830-111D2;0.338179!10831-111D3;0.805728!10832-111D4;0.520702!10833-111D5;0.70542!10764-110E8;0.37449!10770-110F5;0.624238!10399-106A3;0.562628!10400-106A4;0.538844!10405-106A9;0.547725!10834-111D6;0.593166!10835-111D7;0.825404!10836-111D8;0.0751371!10837-111D9;0.292905!10699-109G6;0.973952!10802-111A1;0.0294095!10796-110I4;0.530513!10010-101C1;0.244413!10810-111A9;0.0721546!10421-106C7;0.886841!10708-109H6;0.0866536!12235-129G3;0.984221!12236-129G4;0.868669!12237-129G5;0.520379!10167-103B5;0.262727!10151-102I7;0.103846!10428-106D5;0.106162!10795-110I3;0.56946!10805-111A4;0.21441!10052-101G7;0.484459!10189-103D9;0.143455!10589-108D4;0.329932!10425-106D2;0.0289507!10427-106D4;0.989563!10702-109G9;0.632021!10432-106D9;0.6802!10496-107C1;0.410606!10718-109I7;0.0752932!10011-101C2;0.252411!10053-101G8;0.310572!10686-109F2;0.904001!10084-102B3;0.620521!10012-101C3;0.168687!10085-102B4;0.299117!10482-107A5;0.111288!10419-106C5;0.076829!10080-102A8;0.0529833!10760-110E4;0.148989!10709-109H7;0.01112!10710-109H8;0.0424929!10703-109H1;0.070288!10719-109I8;0.536144!10642-109A3;0.808193!10177-103C6;0.552599!10164-103B2;0.184674!10173-103C2;0.175747!10166-103B4;0.413713!10083-102B2;0.518546!10188-103D8;0.485289!10552-107I3;0.147002!10553-107I4;0.170745!10013-101C4;0.985665!10536-107G5;0.299083!10618-108G6;0.740684!10423-106C9;0.545135!10785-110H2;0.651293!12238-129G6;0.761478!12239-129G7;0.771499!12240-129G8;0.946342!10416-106C2;0.550901!10801-110I9;0.0233254!10766-110F1;0.48555!10824-111C5;0.568248!10825-111C6;0.306444!10826-111C7;0.430942!10454-106G4;0.507918!10409-106B4;0.864137!10638-108I8;0.362159!10636-108I6;0.520738!10513-107D9;0.301616!10420-106C6;0.791222!10082-102B1;0.62358!10014-101C5;0.62595!10070-101I7;0.855179!10452-106G2;0.779542!10453-106G3;0.413128!10449-106F8;0.130965!10042-101F6;0.136451!10069-101I6;0.204497!10193-103E4;0.084792!10631-108I1;0.223873!10438-106E6;0.5546!10488-107B2;0.364047!10196-103E7;0.0271061!10071-101I8;0.584977!10071-101I8;0.455153!10041-101F5;0.163646!10451-106G1;0.00657152!10450-106F9;0.945793!10604-108F1;0.979837!10605-108F2;0.268372!10606-108F3;0.0605008!10603-108E9;0.270791!10497-107C2;0.570476!10448-106F7;0.0606787!10643-109A4;0.93729!10426-106D3;0.0856433!10431-106D8;0.25263!10197-103E8;0.371838!10443-106F2;0.97815!10815-111B5;0.620431!10816-111B6;0.210573!10817-111B7;0.513438!10015-101C6;0.303051!10410-106B5;0.768426!10054-101G9;0.468692!10758-110E2;0.495452!10711-109H9;0.980585!10040-101F4;0.85278!10470-106I2;0.210387!10415-106C1;0.290049!10198-103E9;0.95545!10614-108G2;0.491742!10612-108F9;0.11237!10549-107H9;0.131309!10615-108G3;0.654279!10487-107B1;0.372634!10433-106E1;0.532353!10688-109F4;0.366627!10444-106F3;0.0399427!10444-106F3;0.241822!10485-107A8;0.254218!10413-106B8;0.394927!10175-103C4;0.126844!10161-103A8;0.18366!12131-128D7;0.198055!10624-108H3;0.72046!10712-109I1;0.213084!10205-103F7;0.557713!10206-103F8;0.151372!10207-103F9;0.318651!10050-101G5;0.0271321!10051-101G6;0.999046!10016-101C7;0.600869!10046-101G1;0.435802!10778-110G4;0.286323!10633-108I3;0.601026!10818-111B8;0.250077!10819-111B9;0.290887!10820-111C1;0.210103!10484-107A7;0.372955!10808-111A7;0.576674!10169-103B7;0.420474!10153-102I9;0.185901!13425-144D5;0.118206!13433-144E4;0.692469!13437-144E8;0.566598!11904-125F5;0.328807!11905-125F6;0.660116!10039-101F3;0.829193!10791-110H8;0.209152!10017-101C8;0.060768!10045-101F9;0.72996!10509-107D5;0.525053!10839-111E2;0.940583!10692-109F8;0.224969!10079-102A7;0.892866!10078-102A6;0.179474!10721-110A1;0.367261!10569-108B2;0.380809!10570-108B3;0.609443!10571-108B4;0.279997!10647-109A8;0.846911!10752-110D5;0.104026!10782-110G8;0.887035!10726-110A6;0.237443!10018-101C9;0.80472!10086-102B5;0.740344!10182-103D2;0.536816!10165-103B3;0.197925!10499-107C4;0.306894!10408-106B3;0.212314!10019-101D1;0.0226791!10068-101I5;0.410374!10075-102A3;0.343905!10077-102A5;0.170717!10727-110A7;0.197393!10775-110G1;0.782445!10412-106B7;0.925503!12231-129F8;0.26931!12232-129F9;0.0648618!12233-129G1;0.00454166!12234-129G2;0.023201!10414-106B9;0.0508432!10170-103B8;0.056098!10183-103D3;0.212538!10150-102I6;0.230023!10174-103C3;0.279863!10155-103A2;0.122549!10038-101F2;0.198363!10838-111E1;0.174911!10759-110E3;0.902567!10514-107E1;0.461716!10465-106H6;0.123453!10691-109F7;0.150446!10843-111E6;0.112485!10844-111E7;0.506412!11747-123G1;0.886482!11748-123G2;0.828917!11749-123G3;0.407161!11750-123G4;0.958986!11751-123G5;0.518318!11840-124H4;0.672961!11752-123G6;0.915575!11753-123G7;0.813109!11754-123G8;0.488357!11755-123G9;0.38414!11756-123H1;0.60104!11833-124G6;0.24739!11760-123H5;0.723529!11836-124G9;0.234223!11758-123H3;0.204481!11835-124G8;0.724437!11762-123H7;0.890841!11838-124H2;0.835745!11757-123H2;0.945048!11759-123H4;0.710806!11761-123H6;0.676643!11842-124H6;0.583162!11837-124H1;0.802426!10568-108B1;0.914568!13230-141I8;0.851605!13231-141I9;0.583451!10696-109G3;0.727634!10493-107B7;0.837584!10494-107B8;0.67735!10850-111F4;0.685407!10851-111F5;0.201914!10852-111F6;0.53181!10853-111F7;0.897039!10854-111F8;0.32394!10855-111F9;0.957674!10856-111G1;0.681524!10847-111F1;0.590849!10846-111E9;0.963835!10848-111F2;0.965769!10845-111E8;0.898943!10857-111G2;0.212013!10858-111G3;0.495666!10156-103A3;0.267566!11901-125F2;0.23051!11902-125F3;0.885088!11903-125F4;0.683415!10689-109F5;0.630627!10648-109A9;0.814462!10784-110H1;0.623123!10744-110C6;0.487139!10772-110F7;0.365432!10474-106I6;0.478633!10600-108E6;0.273758!10684-109E9;0.244862!12226-129F3;0.299794!12227-129F4;0.0848421!10508-107D4;0.851734!10539-107G8;0.403278!10607-108F4;0.232829!10555-107I6;0.343341!10774-110F9;0.551991!10637-108I7;0.685569!10663-109C6;0.0217683!10728-110A8;0.399365!10729-110A9;0.45244!10430-106D7;0.232146!10730-110B1;0.994711!10813-111B3;0.00666713!10812-111B2;0.167357!10037-101F1;0.713286!10172-103C1;0.204804!10163-103B1;0.389493!10076-102A4;0.24276!10073-102A1;0.244692!10036-101E9;0.123579!10195-103E6;0.270663!10277-104E7;0.242173!10434-106E2;0.75967!10550-107I1;0.110829!10545-107H5;0.112718!10544-107H4;0.0109226!10704-109H2;0.039895!10510-107D6;0.0789931!10558-107I9;0.780296!10020-101D2;0.612911!10732-110B3;0.0320929!10049-101G4;0.238054!10698-109G5;0.144882!10437-106E5;0.623123!10417-106C3;0.609017!10035-101E8;0.138358!10171-103B9;0.267798!10157-103A4;0.227537!10034-101E7;0.254888!10072-101I9;0.258414!10199-103F1;0.0934996!10200-103F2;0.41125!10697-109G4;0.433999!10723-110A3;0.361451!10179-103C8;0.212833!10160-103A7;0.330169!10180-103C9;0.505965!10162-103A9;0.539131!10021-101D3;0.251659!10840-111E3;0.207614!10706-109H4;0.621832!10033-101E6;0.619633!10032-101E5;0.341179!10490-107B4;0.300452!10439-106E7;0.163888!10022-101D4;0.447915!10176-103C5;0.509932!10469-106I1;0.103516!10067-101I4;0.0946463!10411-106B6;0.244106!10471-106I3;0.732087!10030-101E3;0.695717!10475-106I7;0.44727!10787-110H4;0.581227!10477-106I9;0.544429!10695-109G2;0.717374!11771-123I7;0.0944764!11772-123I8;0.0337025!11773-123I9;0.4019!10093-102C3;0.496208!10442-106F1;0.499292!10442-106F1;0.677201!10201-103F3;0.711131!10639-108I9;0.712572!11843-124H7;0.337612!11841-124H5;0.6899!10693-109F9;0.752846!10436-106E4;0.473472!10483-107A6;0.0516785!10282-104F3;0.0443782!10023-101D5;0.537355!10066-101I3;0.534075!10065-101I2;0.408538!10800-110I8;0.745794!10610-108F7;0.31277!10841-111E4;0.173049!10541-107H1;0.495556!10842-111E5;0.115144!10562-108A4;0.547806!10024-101D6;0.257441!10064-101I1;0.650872!10609-108F6;0.887154!10048-101G3;0.0114794!10781-110G7;0.230308!10181-103D1;0.0815014!10159-103A6;0.19097!10056-101H2;0.155428!10737-110B8;0.0807867!10025-101D7;0.113894!10044-101F8;0.326971!10424-106D1;0.228331!10463-106H4;0.825927!10616-108G4;0.110138!10486-107A9;0.737819!10062-101H8;0.00255924!10202-103F4;0.201523!10158-103A5;0.747015!10441-106E9;0.450087!10031-101E4;0.997414!10063-101H9;0.213269!10063-101H9;0.0928478!11763-123H8;0.829791!11765-123I1;0.833189!11768-123I4;0.978264!10807-111A6;0.604591!10790-110H7;0.313818!10798-110I6;0.228737!10786-110H3;0.299298!10591-108D6;0.729934!10593-108D8;0.690669!10590-108D5;0.793371!10026-101D8;0.629853!10096-102C6;0.119609!10168-103B6;0.12902!10154-103A1;0.0698057!10209-103G2;0.213679!10061-101H7;0.549122!10027-101D9;0.626605!10043-101F7;0.639518!10783-110G9;0.96678!10028-101E1;0.0691915!10060-101H6;0.83435!10203-103F5;0.247129!10059-101H5;0.351659!10047-101G2;0.608341!10029-101E2;0.962199!10058-101H4;0.477555!10418-106C4;0.337471!10492-107B6;0.660273!10694-109G1;0.697005!10797-110I5;0.393095!10057-101H3;0.321482!10100-102D1;0.612861!10055-101H1;0.208004!10204-103F6;0.409334!10191-103E2;0.257689!10563-108A5;0.439143
|name=MCR_f1
|name=MCR_f1
|tomtom_result=Ar#MA0007.1;3;0.00013406;0.0638127;0.127625;17;AAGAACAGGTTGTTGTA;GGCGGGTACACGATGTTCTTAT;-!NR3C1#MA0113.1;1;0.00256674;1.22177;0.950994;17;AAGAACAGGTTGTTGTA;TCAGGACATAATGTTCCC;-!ESR2#MA0258.1;1;0.00547271;2.60501;1;17;AAGAACAGGTTGTTGTA;CAAGGTCACGGTGACCTG;+!MYC::MAX#MA0059.1;-2;0.00549184;2.61412;1;11;AAGAACAGGTTGTTGTA;GAGCACGTGGT;+!En1#MA0027.1;-6;0.00730897;3.47907;1;11;AAGAACAGGTTGTTGTA;AAGTAGTGCCC;+!sna#MA0086.1;-5;0.0118184;5.62556;1;6;AAGAACAGGTTGTTGTA;CAGGTG;+!Pax4#MA0068.1;5;0.0157906;7.51632;1;17;AAGAACAGGTTGTTGTA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!MAX#MA0058.1;-2;0.0172426;8.20749;1;10;AAGAACAGGTTGTTGTA;AACCACGTGA;+
}}
}}

Latest revision as of 12:09, 7 September 2012

Full Name: MCR_f1

Motif matrix
POACGT
12.7222222222222231.72222222222222190.7222222222222211.833333333333334
24.8888888888888870.00.02.1111111111111143
30.88888888888888910.06.1111111111111110.0
42.8888888888888910.02.00000000000000182.1111111111111143
53.222222222222222.8888888888888910.88888888888888910.0
60.05.2222222222222220.88888888888888910.8888888888888891
74.1111111111111160.00.02.888888888888891
81.38888888888888621.1666666666666694.1666666666666650.2777777777777779
91.1666666666666691.38888888888888624.1666666666666650.2777777777777779
101.2777777777777810.27777777777777790.27777777777777795.166666666666666
110.01.1111111111111131.77777777777777814.111111111111116
121.1111111111111130.05.8888888888888940.0
133.1111111111111080.00.03.888888888888892
142.00000000000000180.02.00000000000000183.000000000000003
150.02.11111111111111434.8888888888888870.0
160.88888888888888910.02.00000000000000184.111111111111116
173.2777777777777760.27777777777777792.2777777777777751.166666666666669

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Ar#MA0007.130.000134060.06381270.12762517AAGAACAGGTTGTTGTAGGCGGGTACACGATGTTCTTAT-
NR3C1#MA0113.110.002566741.221770.95099417AAGAACAGGTTGTTGTATCAGGACATAATGTTCCC-
ESR2#MA0258.110.005472712.60501117AAGAACAGGTTGTTGTACAAGGTCACGGTGACCTG+
MYC::MAX#MA0059.1-20.005491842.61412111AAGAACAGGTTGTTGTAGAGCACGTGGT+
En1#MA0027.1-60.007308973.47907111AAGAACAGGTTGTTGTAAAGTAGTGCCC+
sna#MA0086.1-50.01181845.6255616AAGAACAGGTTGTTGTACAGGTG+
Pax4#MA0068.150.01579067.51632117AAGAACAGGTTGTTGTAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
MAX#MA0058.1-20.01724268.20749110AAGAACAGGTTGTTGTAAACCACGTGA+
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