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MacroAPE 1083:5-TTAATCAGCC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;117.058;134.562;112.682;729.698!2;103.93;127.998;108.306;753.766!3;773.458;98.46;98.46;123.622!4;743.92;100.648;150.972;98.46!5;89.708;100.6...")
 
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6!11837-124H1;0.374895!10568-108B1;0.888731!13230-141I8;0.853342!13231-141I9;0.317332!10696-109G3;0.278487!10493-107B7;0.0605343!10494-107B8;0.995417!10850-111F4;0.869403!10851-111F5;0.212756!10852-111F6;0.4322!10853-111F7;0.191805!10854-111F8;0.102295!10855-111F9;0.634191!10856-111G1;0.217659!10847-111F1;0.636876!10846-111E9;0.165112!10848-111F2;0.586558!10845-111E8;0.699141!10857-111G2;0.209638!10858-111G3;0.529084!10156-103A3;0.818396!11901-125F2;0.320386!11902-125F3;0.179168!11903-125F4;0.123149!10689-109F5;0.08012!10648-109A9;0.422865!10784-110H1;0.739329!10744-110C6;0.631763!10772-110F7;0.0497791!10474-106I6;0.137151!10600-108E6;0.143835!10684-109E9;0.652691!12226-129F3;0.224707!12227-129F4;0.528795!10508-107D4;0.404675!10539-107G8;0.657794!10607-108F4;0.969006!10555-107I6;0.968204!10774-110F9;0.864274!10637-108I7;0.128588!10663-109C6;0.705119!10728-110A8;0.375555!10729-110A9;0.702594!10430-106D7;0.454401!10730-110B1;0.567567!10813-111B3;0.734881!10812-111B2;0.112485!10037-101F1;0.612821!10172-103C1;0.393009!10163-103B1;0.50691!10076-102A4;0.300931!10073-102A1;0.322873!10036-101E9;0.140698!10195-103E6;0.308033!10277-104E7;0.288011!10434-106E2;0.0559415!10550-107I1;0.3763!10545-107H5;0.806267!10544-107H4;0.655243!10704-109H2;0.216896!10510-107D6;0.866255!10558-107I9;0.20866!10020-101D2;0.980134!10732-110B3;0.937375!10049-101G4;0.47539!10698-109G5;0.466417!10437-106E5;0.182861!10417-106C3;0.682807!10035-101E8;0.455819!10171-103B9;0.331874!10157-103A4;0.550104!10034-101E7;0.39158!10072-101I9;0.350418!10199-103F1;0.18139!10200-103F2;0.287094!10697-109G4;0.409496!10723-110A3;0.344205!10179-103C8;0.429489!10160-103A7;0.308605!10180-103C9;0.649992!10162-103A9;0.899416!10021-101D3;0.908305!10840-111E3;0.502473!10706-109H4;0.281781!10033-101E6;0.0688648!10032-101E5;0.440851!10490-107B4;0.348584!10439-106E7;0.435624!10022-101D4;0.556446!10176-103C5;0.859559!10469-106I1;0.587404!10067-101I4;0.658661!10411-106B6;0.332653!10471-106I3;0.544834!10030-101E3;0.590636!10475-106I7;0.522425!10787-110H4;0.560685!10477-106I9;0.721091!10695-109G2;0.526723!11771-123I7;0.137184!11772-123I8;0.606635!11773-123I9;0.691174!10093-102C3;0.53795!10442-106F1;0.712876!10442-106F1;0.201827!10201-103F3;0.0873662!10639-108I9;0.548942!11843-124H7;0.105548!11841-124H5;0.13999!10693-109F9;0.143953!10436-106E4;0.795383!10483-107A6;0.816623!10282-104F3;0.840895!10023-101D5;0.872582!10066-101I3;0.936621!10065-101I2;0.88874!10800-110I8;0.610608!10610-108F7;0.878025!10841-111E4;0.308666!10541-107H1;0.517768!10842-111E5;0.371513!10562-108A4;0.94669!10024-101D6;0.947886!10064-101I1;0.134539!10609-108F6;0.271084!10048-101G3;0.949482!10781-110G7;0.895417!10181-103D1;0.568126!10159-103A6;0.155976!10056-101H2;0.0921321!10737-110B8;0.133716!10025-101D7;0.302217!10044-101F8;0.000639485!10424-106D1;0.164948!10463-106H4;0.191956!10616-108G4;0.744016!10486-107A9;0.419308!10062-101H8;0.580784!10202-103F4;0.970519!10158-103A5;0.320473!10441-106E9;0.0754352!10031-101E4;0.829602!10063-101H9;0.363007!10063-101H9;0.133797!11763-123H8;0.381644!11765-123I1;0.484212!11768-123I4;0.416879!10807-111A6;0.536978!10790-110H7;0.396718!10798-110I6;0.521145!10786-110H3;0.930939!10591-108D6;0.330267!10593-108D8;0.276884!10590-108D5;0.113389!10026-101D8;0.680521!10096-102C6;0.825803!10168-103B6;0.371878!10154-103A1;0.361544!10209-103G2;0.177165!10061-101H7;0.336548!10027-101D9;0.353352!10043-101F7;0.100451!10783-110G9;0.176554!10028-101E1;0.89036!10060-101H6;0.544039!10203-103F5;0.563588!10059-101H5;0.763961!10047-101G2;0.968684!10029-101E2;0.333774!10058-101H4;0.801072!10418-106C4;0.504599!10492-107B6;0.728077!10694-109G1;0.832695!10797-110I5;0.2525!10057-101H3;0.966555!10100-102D1;0.363718!10055-101H1;0.624348!10204-103F6;0.547176!10191-103E2;0.741028!10563-108A5;0.231991
|name=5-TTAATCAGCC,CNhs11073,BestGuess:VSX1,2.p2.SwissRegulon.nucfreq(0.718299549902452),T:1094.0(41.02%),B:13299.7(29.63%),P:1e-35
|name=5-TTAATCAGCC,CNhs11073,BestGuess:VSX1,2.p2.SwissRegulon.nucfreq(0.718299549902452),T:1094.0(41.02%),B:13299.7(29.63%),P:1e-35
|tomtom_result=YAP6#MA0418.1;9;0.00224446;1.06836;0.401416;10;TTAATCAGCC;GTCGCTTACGTAATCAGACC;-!CAD1#MA0279.1;1;0.00454074;2.16139;0.401416;9;TTAATCAGCC;ATTAGTAAGC;+!Lhx3#MA0135.1;3;0.0057905;2.75628;0.401416;10;TTAATCAGCC;AAATTAATTAATC;+!YAP7#MA0419.1;1;0.00611641;2.91141;0.401416;10;TTAATCAGCC;ATTAGTAAGCA;+!Mafb#MA0117.1;-1;0.0077983;3.71199;0.401416;8;TTAATCAGCC;GCGTCAGC;-!Vsx2#MA0180.1;1;0.00810149;3.85631;0.401416;8;TTAATCAGCC;TTTAATTAG;+!bsh#MA0214.1;0;0.0122832;5.8468;0.401416;7;TTAATCAGCC;TTAATTG;+!Gfi#MA0038.1;0;0.0130032;6.18951;0.401416;10;TTAATCAGCC;CAAATCACTG;+!C15#MA0170.1;0;0.0133305;6.34532;0.401416;7;TTAATCAGCC;TTAATTA;+!Lim3#MA0195.1;-1;0.0133305;6.34532;0.401416;7;TTAATCAGCC;TAATTAA;-!SWI5#MA0402.1;-2;0.0136132;6.4799;0.401416;8;TTAATCAGCC;AACCAGCA;-!abd-A#MA0206.1;0;0.013884;6.60876;0.401416;7;TTAATCAGCC;TTAATTA;+!otp#MA0236.1;0;0.013884;6.60876;0.401416;7;TTAATCAGCC;TTAATTA;+!ro#MA0241.1;-1;0.0144584;6.8822;0.401416;7;TTAATCAGCC;TAATTAG;-!btn#MA0215.1;0;0.0150543;7.16585;0.401416;7;TTAATCAGCC;TTAATGA;+!ftz#MA0225.1;0;0.0150543;7.16585;0.401416;7;TTAATCAGCC;TTAATGA;+!lab#MA0230.1;0;0.0150543;7.16585;0.401416;7;TTAATCAGCC;TTAATTA;+!Awh#MA0167.1;-1;0.0156722;7.45996;0.401416;7;TTAATCAGCC;TAATTAA;-!Dfd#MA0186.1;0;0.0156722;7.45996;0.401416;7;TTAATCAGCC;TTAATGA;+!Ptx1#MA0201.1;0;0.0156722;7.45996;0.401416;7;TTAATCAGCC;TTAATCC;+!Antp#MA0166.1;0;0.0163124;7.76472;0.401416;7;TTAATCAGCC;TTAATGA;+!CG32105#MA0178.1;0;0.0163124;7.76472;0.401416;7;TTAATCAGCC;TTAATTA;+!CG9876#MA0184.1;-1;0.0163124;7.76472;0.401416;7;TTAATCAGCC;TAATTAG;-!HGTX#MA0191.1;0;0.0163124;7.76472;0.401416;7;TTAATCAGCC;TTAATTA;+!onecut#MA0235.1;-1;0.0163124;7.76472;0.401416;7;TTAATCAGCC;AAATCAA;-!ems#MA0219.1;0;0.016975;8.08012;0.401416;7;TTAATCAGCC;TTAATGA;+!Scr#MA0203.1;0;0.0183659;8.74217;0.401416;7;TTAATCAGCC;TTAATGA;+!eve#MA0221.1;0;0.0183659;8.74217;0.401416;7;TTAATCAGCC;CTAATGA;+!repo#MA0240.1;0;0.0183659;8.74217;0.401416;7;TTAATCAGCC;TTAATTA;+!Nobox#MA0125.1;-1;0.0187552;8.92746;0.401416;8;TTAATCAGCC;TAATTGGT;+!CG11294#MA0172.1;0;0.0190948;9.08913;0.401416;7;TTAATCAGCC;TTAATTA;+!al#MA0208.1;0;0.0190948;9.08913;0.401416;7;TTAATCAGCC;TTAATTA;-!SMP1#MA0383.1;11;0.0191833;9.13126;0.401416;10;TTAATCAGCC;TTACCTATAATTAAATTAGCA;+!CG42234#MA0174.1;0;0.0198495;9.44835;0.401416;7;TTAATCAGCC;TTTATTA;+!Lim1#MA0194.1;0;0.0198495;9.44835;0.401416;7;TTAATCAGCC;TTAATTA;+!zen2#MA0257.1;0;0.0198495;9.44835;0.401416;7;TTAATCAGCC;TTAATTA;+!Pph13#MA0200.1;-1;0.0206356;9.82255;0.401416;7;TTAATCAGCC;TAATTAG;-!ap#MA0209.1;-1;0.0206356;9.82255;0.401416;7;TTAATCAGCC;TAATTAG;-!H2.0#MA0448.1;0;0.0206356;9.82255;0.401416;7;TTAATCAGCC;TTAATTA;+
}}
}}

Latest revision as of 12:16, 7 September 2012

Full Name: 5-TTAATCAGCC,CNhs11073,BestGuess:VSX1,2.p2.SwissRegulon.nucfreq(0.718299549902452),T:1094.0(41.02%),B:13299.7(29.63%),P:1e-35

Motif matrix
POACGT
1117.058134.562112.682729.698
2103.93127.998108.306753.766
3773.45898.4698.46123.622
4743.92100.648150.97298.46
589.708100.648109.4794.244
6115.964782.2195.178100.648
7732.98133.468129.09298.46
8103.93102.836781.116106.118
9106.118793.1597.36697.366
1099.554778.928133.46882.05

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YAP6#MA0418.190.002244461.068360.40141610TTAATCAGCCGTCGCTTACGTAATCAGACC-
CAD1#MA0279.110.004540742.161390.4014169TTAATCAGCCATTAGTAAGC+
Lhx3#MA0135.130.00579052.756280.40141610TTAATCAGCCAAATTAATTAATC+
YAP7#MA0419.110.006116412.911410.40141610TTAATCAGCCATTAGTAAGCA+
Mafb#MA0117.1-10.00779833.711990.4014168TTAATCAGCCGCGTCAGC-
Vsx2#MA0180.110.008101493.856310.4014168TTAATCAGCCTTTAATTAG+
bsh#MA0214.100.01228325.84680.4014167TTAATCAGCCTTAATTG+
Gfi#MA0038.100.01300326.189510.40141610TTAATCAGCCCAAATCACTG+
C15#MA0170.100.01333056.345320.4014167TTAATCAGCCTTAATTA+
Lim3#MA0195.1-10.01333056.345320.4014167TTAATCAGCCTAATTAA-
SWI5#MA0402.1-20.01361326.47990.4014168TTAATCAGCCAACCAGCA-
abd-A#MA0206.100.0138846.608760.4014167TTAATCAGCCTTAATTA+
otp#MA0236.100.0138846.608760.4014167TTAATCAGCCTTAATTA+
ro#MA0241.1-10.01445846.88220.4014167TTAATCAGCCTAATTAG-
btn#MA0215.100.01505437.165850.4014167TTAATCAGCCTTAATGA+
ftz#MA0225.100.01505437.165850.4014167TTAATCAGCCTTAATGA+
lab#MA0230.100.01505437.165850.4014167TTAATCAGCCTTAATTA+
Awh#MA0167.1-10.01567227.459960.4014167TTAATCAGCCTAATTAA-
Dfd#MA0186.100.01567227.459960.4014167TTAATCAGCCTTAATGA+
Ptx1#MA0201.100.01567227.459960.4014167TTAATCAGCCTTAATCC+
Antp#MA0166.100.01631247.764720.4014167TTAATCAGCCTTAATGA+
CG32105#MA0178.100.01631247.764720.4014167TTAATCAGCCTTAATTA+
CG9876#MA0184.1-10.01631247.764720.4014167TTAATCAGCCTAATTAG-
HGTX#MA0191.100.01631247.764720.4014167TTAATCAGCCTTAATTA+
onecut#MA0235.1-10.01631247.764720.4014167TTAATCAGCCAAATCAA-
ems#MA0219.100.0169758.080120.4014167TTAATCAGCCTTAATGA+
Scr#MA0203.100.01836598.742170.4014167TTAATCAGCCTTAATGA+
eve#MA0221.100.01836598.742170.4014167TTAATCAGCCCTAATGA+
repo#MA0240.100.01836598.742170.4014167TTAATCAGCCTTAATTA+
Nobox#MA0125.1-10.01875528.927460.4014168TTAATCAGCCTAATTGGT+
CG11294#MA0172.100.01909489.089130.4014167TTAATCAGCCTTAATTA+
al#MA0208.100.01909489.089130.4014167TTAATCAGCCTTAATTA-
SMP1#MA0383.1110.01918339.131260.40141610TTAATCAGCCTTACCTATAATTAAATTAGCA+
CG42234#MA0174.100.01984959.448350.4014167TTAATCAGCCTTTATTA+
Lim1#MA0194.100.01984959.448350.4014167TTAATCAGCCTTAATTA+
zen2#MA0257.100.01984959.448350.4014167TTAATCAGCCTTAATTA+
Pph13#MA0200.1-10.02063569.822550.4014167TTAATCAGCCTAATTAG-
ap#MA0209.1-10.02063569.822550.4014167TTAATCAGCCTAATTAG-
H2.0#MA0448.100.02063569.822550.4014167TTAATCAGCCTTAATTA+
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