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MacroAPE 1083:Motif550: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;69562;0;33725;18280!02;22024;5274;91345;2924!03;121567;0;0;0!04;121567;0;0;0!05;121567;0;0;0!06;32347;32478;56742;0!07;0;121567;0;0 |macro...")
 
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H5;0.729522!10792-110H9;0.206958!10765-110E9;0.877111!10829-111D1;0.620751!10830-111D2;0.92267!10831-111D3;0.790566!10832-111D4;0.896515!10833-111D5;0.747129!10764-110E8;0.947246!10770-110F5;0.586115!10399-106A3;0.588899!10400-106A4;0.350829!10405-106A9;0.329263!10834-111D6;0.281431!10835-111D7;0.56848!10836-111D8;0.987468!10837-111D9;0.524317!10699-109G6;0.566788!10802-111A1;0.752948!10796-110I4;0.536992!10010-101C1;0.630124!10810-111A9;0.838759!10421-106C7;0.852432!10708-109H6;0.430523!12235-129G3;0.505647!12236-129G4;0.885513!12237-129G5;0.713946!10167-103B5;0.517358!10151-102I7;0.819076!10428-106D5;0.945024!10795-110I3;0.190005!10805-111A4;0.723271!10052-101G7;0.974502!10189-103D9;0.54267!10589-108D4;0.47867!10425-106D2;0.518494!10427-106D4;0.917012!10702-109G9;0.296905!10432-106D9;0.64725!10496-107C1;0.412788!10718-109I7;0.950455!10011-101C2;0.853809!10053-101G8;0.623698!10686-109F2;0.924138!10084-102B3;0.0380787!10012-101C3;0.411457!10085-102B4;0.696984!10482-107A5;0.364544!10419-106C5;0.714314!10080-102A8;0.915169!10760-110E4;0.370251!10709-109H7;0.97855!10710-109H8;0.70793!10703-109H1;0.929366!10719-109I8;0.754349!10642-109A3;0.844639!10177-103C6;0.828312!10164-103B2;0.785564!10173-103C2;0.881552!10166-103B4;0.635668!10083-102B2;0.846862!10188-103D8;0.418515!10552-107I3;0.933575!10553-107I4;0.65763!10013-101C4;0.852255!10536-107G5;0.60686!10618-108G6;0.609411!10423-106C9;0.970517!10785-110H2;0.741771!12238-129G6;0.571645!12239-129G7;0.833916!12240-129G8;0.686497!10416-106C2;0.745241!10801-110I9;0.811003!10766-110F1;0.631568!10824-111C5;0.673011!10825-111C6;0.995367!10826-111C7;0.92796!10454-106G4;0.995883!10409-106B4;0.779039!10638-108I8;0.763612!10636-108I6;0.520021!10513-107D9;0.167506!10420-106C6;0.917853!10082-102B1;0.693364!10014-101C5;0.292706!10070-101I7;0.708793!10452-106G2;0.604606!10453-106G3;0.254769!10449-106F8;0.315157!10042-101F6;0.323027!10069-101I6;0.630749!10193-103E4;0.659089!10631-108I1;0.622448!10438-106E6;0.867827!10488-107B2;0.348846!10196-103E7;0.856576!10071-101I8;0.331384!10071-101I8;0.942578!10041-101F5;0.485699!10451-106G1;0.624552!10450-106F9;0.788851!10604-108F1;0.920953!10605-108F2;0.441862!10606-108F3;0.620236!10603-108E9;0.509402!10497-107C2;0.277946!10448-106F7;0.338832!10643-109A4;0.771769!10426-106D3;0.655354!10431-106D8;0.511081!10197-103E8;0.454188!10443-106F2;0.935392!10815-111B5;0.65774!10816-111B6;0.587005!10817-111B7;0.528402!10015-101C6;0.540475!10410-106B5;0.642428!10054-101G9;0.626291!10758-110E2;0.990215!10711-109H9;0.852095!10040-101F4;0.748749!10470-106I2;0.661363!10415-106C1;0.825027!10198-103E9;0.233404!10614-108G2;0.976727!10612-108F9;0.496408!10549-107H9;0.72338!10615-108G3;0.703921!10487-107B1;0.9627!10433-106E1;0.78941!10688-109F4;0.937401!10444-106F3;0.60543!10444-106F3;0.749382!10485-107A8;0.679963!10413-106B8;0.835768!10175-103C4;0.976914!10161-103A8;0.804001!12131-128D7;0.859988!10624-108H3;0.485896!10712-109I1;0.922134!10205-103F7;0.190992!10206-103F8;0.910261!10207-103F9;0.974133!10050-101G5;0.982179!10051-101G6;0.698389!10016-101C7;0.514286!10046-101G1;0.835806!10778-110G4;0.994824!10633-108I3;0.389348!10818-111B8;0.995776!10819-111B9;0.25743!10820-111C1;0.244003!10484-107A7;0.260708!10808-111A7;0.971187!10169-103B7;0.184373!10153-102I9;0.910998!13425-144D5;0.901229!13433-144E4;0.795125!13437-144E8;0.777074!11904-125F5;0.865586!11905-125F6;0.093221!10039-101F3;0.0550248!10791-110H8;0.682014!10017-101C8;0.4993!10045-101F9;0.643976!10509-107D5;0.983634!10839-111E2;0.585129!10692-109F8;0.202125!10079-102A7;0.40327!10078-102A6;0.761712!10721-110A1;0.597078!10569-108B2;0.978389!10570-108B3;0.193866!10571-108B4;0.116911!10647-109A8;0.393823!10752-110D5;0.928806!10782-110G8;0.733937!10726-110A6;0.897758!10018-101C9;0.988294!10086-102B5;0.293138!10182-103D2;0.0954313!10165-103B3;0.8272!10499-107C4;0.866603!10408-106B3;0.49868!10019-101D1;0.418656!10068-101I5;0.536221!10075-102A3;0.160838!10077-102A5;0.811592!10727-110A7;0.879157!10775-110G1;0.223776!10412-106B7;0.665894!12231-129F8;0.234099!12232-129F9;0.761654!12233-129G1;0.578223!12234-129G2;0.737686!10414-106B9;0.7866!10170-103B8;0.877257!10183-103D3;0.837536!10150-102I6;0.802347!10174-103C3;0.933066!10155-103A2;0.963446!10038-101F2;0.896139!10838-111E1;0.629075!10759-110E3;0.634212!10514-107E1;0.698808!10465-106H6;0.920395!10691-109F7;0.651263!10843-111E6;0.36515!10844-111E7;0.46564!11747-123G1;0.551094!11748-123G2;0.933867!11749-123G3;0.732736!11750-123G4;0.486627!11751-123G5;0.151689!11840-124H4;0.302435!11752-123G6;0.3916!11753-123G7;0.804002!11754-123G8;0.671932!11755-123G9;0.842894!11756-123H1;0.640728!11833-124G6;0.972605!11760-123H5;0.598239!11836-124G9;0.711184!11758-123H3;0.788119!11835-124G8;0.747126!11762-123H7;0.964098!11838-124H2;0.732144!11757-123H2;0.316746!11759-123H4;0.839276!11761-123H6;0.499984!11842-124H6;0.477018!11837-124H1;0.876126!10568-108B1;0.800981!13230-141I8;0.925934!13231-141I9;0.890804!10696-109G3;0.628655!10493-107B7;0.262541!10494-107B8;0.97242!10850-111F4;0.815226!10851-111F5;0.598878!10852-111F6;0.891096!10853-111F7;0.928649!10854-111F8;0.917175!10855-111F9;0.727398!10856-111G1;0.680266!10847-111F1;0.389312!10846-111E9;0.961675!10848-111F2;0.853602!10845-111E8;0.710662!10857-111G2;0.686723!10858-111G3;0.791287!10156-103A3;0.828975!11901-125F2;0.909179!11902-125F3;0.236888!11903-125F4;0.18964!10689-109F5;0.200427!10648-109A9;0.84873!10784-110H1;0.963729!10744-110C6;0.450717!10772-110F7;0.403294!10474-106I6;0.590675!10600-108E6;0.260467!10684-109E9;0.380897!12226-129F3;0.403845!12227-129F4;0.747802!10508-107D4;0.632564!10539-107G8;0.606929!10607-108F4;0.806505!10555-107I6;0.543233!10774-110F9;0.745426!10637-108I7;0.789402!10663-109C6;0.797175!10728-110A8;0.709332!10729-110A9;0.850224!10430-106D7;0.717707!10730-110B1;0.927054!10813-111B3;0.455095!10812-111B2;0.805161!10037-101F1;0.966948!10172-103C1;0.747269!10163-103B1;0.898303!10076-102A4;0.841588!10073-102A1;0.575703!10036-101E9;0.42767!10195-103E6;0.575031!10277-104E7;0.678647!10434-106E2;0.455168!10550-107I1;0.847772!10545-107H5;0.596629!10544-107H4;0.390514!10704-109H2;0.236781!10510-107D6;0.371755!10558-107I9;0.473574!10020-101D2;0.789005!10732-110B3;0.560711!10049-101G4;0.571503!10698-109G5;0.606401!10437-106E5;0.822885!10417-106C3;0.648017!10035-101E8;0.458304!10171-103B9;0.644379!10157-103A4;0.757149!10034-101E7;0.914149!10072-101I9;0.64685!10199-103F1;0.573742!10200-103F2;0.671324!10697-109G4;0.846272!10723-110A3;0.69092!10179-103C8;0.904394!10160-103A7;0.7565!10180-103C9;0.993556!10162-103A9;0.647896!10021-101D3;0.529634!10840-111E3;0.981119!10706-109H4;0.301222!10033-101E6;0.735064!10032-101E5;0.60495!10490-107B4;0.523813!10439-106E7;0.957671!10022-101D4;0.894335!10176-103C5;0.787475!10469-106I1;0.962846!10067-101I4;0.695163!10411-106B6;0.953063!10471-106I3;0.484175!10030-101E3;0.947561!10475-106I7;0.731114!10787-110H4;0.937406!10477-106I9;0.614216!10695-109G2;0.678112!11771-123I7;0.979242!11772-123I8;0.865731!11773-123I9;0.924541!10093-102C3;0.818233!10442-106F1;0.908893!10442-106F1;0.717254!10201-103F3;0.759655!10639-108I9;0.455112!11843-124H7;0.334163!11841-124H5;0.684953!10693-109F9;0.692497!10436-106E4;0.77045!10483-107A6;0.973219!10282-104F3;0.723282!10023-101D5;0.384677!10066-101I3;0.684833!10065-101I2;0.650306!10800-110I8;0.597861!10610-108F7;0.834571!10841-111E4;0.641176!10541-107H1;0.765901!10842-111E5;0.535571!10562-108A4;0.858798!10024-101D6;0.494243!10064-101I1;0.628511!10609-108F6;0.369155!10048-101G3;0.391166!10781-110G7;0.995638!10181-103D1;0.327028!10159-103A6;0.621554!10056-101H2;0.866964!10737-110B8;0.541359!10025-101D7;0.759406!10044-101F8;0.848037!10424-106D1;0.808441!10463-106H4;0.227438!10616-108G4;0.355518!10486-107A9;0.226389!10062-101H8;0.960707!10202-103F4;0.930617!10158-103A5;0.925886!10441-106E9;0.797247!10031-101E4;0.640043!10063-101H9;0.562209!10063-101H9;0.481535!11763-123H8;0.924631!11765-123I1;0.602492!11768-123I4;0.975896!10807-111A6;0.876503!10790-110H7;0.848199!10798-110I6;0.868073!10786-110H3;0.799028!10591-108D6;0.674564!10593-108D8;0.930673!10590-108D5;0.94972!10026-101D8;0.881704!10096-102C6;0.554058!10168-103B6;0.461222!10154-103A1;0.98825!10209-103G2;0.913937!10061-101H7;0.799412!10027-101D9;0.831939!10043-101F7;0.713882!10783-110G9;0.578598!10028-101E1;0.728393!10060-101H6;0.596619!10203-103F5;0.737702!10059-101H5;0.656579!10047-101G2;0.635807!10029-101E2;0.634286!10058-101H4;0.464487!10418-106C4;0.665976!10492-107B6;0.575239!10694-109G1;0.342041!10797-110I5;0.273973!10057-101H3;0.953497!10100-102D1;0.873639!10055-101H1;0.654501!10204-103F6;0.933047!10191-103E2;0.345137!10563-108A5;0.803839
|name=motif550
|name=motif550
|tomtom_result=MNB1A#MA0053.1;-2;0.0014124;0.6723;0.704027;5;AGAAAGC;AAAGC;+!PBF#MA0064.1;-2;0.00195459;0.930383;0.704027;5;AGAAAGC;AAAGC;+!STAT1#MA0137.2;0;0.00296317;1.41047;0.704027;7;AGAAAGC;GGAAAACGAAACTG;+!che-1#MA0260.1;-1;0.00331728;1.57902;0.704027;6;AGAAAGC;GAAACC;+!IRF1#MA0050.1;-1;0.00426082;2.02815;0.704027;6;AGAAAGC;GAAAGCGAAACC;+!Dof2#MA0020.1;-2;0.00475796;2.26479;0.704027;5;AGAAAGC;AAAGCA;+!REL#MA0101.1;0;0.00556522;2.64904;0.704027;7;AGAAAGC;GGAAATCCCC;-!GCR2#MA0305.1;0;0.00592395;2.8198;0.704027;7;AGAAAGC;AGGAAGC;-!dl_2#MA0023.1;0;0.00879343;4.18567;0.928932;7;AGAAAGC;GGAAAACCCC;-!STAT1#MA0137.2;8;0.0111799;5.32161;0.998691;7;AGAAAGC;CATTTCCCGGAAACC;+!Dof3#MA0021.1;-2;0.0117571;5.59636;0.998691;5;AGAAAGC;AAAGCG;+!dl_1#MA0022.1;2;0.0126755;6.03352;0.998691;7;AGAAAGC;CGGAAAAACCCC;-!IRF2#MA0051.1;0;0.013918;6.62499;0.998691;7;AGAAAGC;GGAAAGCGAAACCAAAAC;+!lin-14#MA0261.1;-1;0.0204348;9.72697;0.998691;6;AGAAAGC;GAACAC;+
}}
}}

Latest revision as of 12:47, 7 September 2012

Full Name: motif550

Motif matrix
POACGT
016956203372518280
02220245274913452924
03121567000
04121567000
05121567000
063234732478567420
07012156700

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MNB1A#MA0053.1-20.00141240.67230.7040275AGAAAGCAAAGC+
PBF#MA0064.1-20.001954590.9303830.7040275AGAAAGCAAAGC+
STAT1#MA0137.200.002963171.410470.7040277AGAAAGCGGAAAACGAAACTG+
che-1#MA0260.1-10.003317281.579020.7040276AGAAAGCGAAACC+
IRF1#MA0050.1-10.004260822.028150.7040276AGAAAGCGAAAGCGAAACC+
Dof2#MA0020.1-20.004757962.264790.7040275AGAAAGCAAAGCA+
REL#MA0101.100.005565222.649040.7040277AGAAAGCGGAAATCCCC-
GCR2#MA0305.100.005923952.81980.7040277AGAAAGCAGGAAGC-
dl_2#MA0023.100.008793434.185670.9289327AGAAAGCGGAAAACCCC-
STAT1#MA0137.280.01117995.321610.9986917AGAAAGCCATTTCCCGGAAACC+
Dof3#MA0021.1-20.01175715.596360.9986915AGAAAGCAAAGCG+
dl_1#MA0022.120.01267556.033520.9986917AGAAAGCCGGAAAAACCCC-
IRF2#MA0051.100.0139186.624990.9986917AGAAAGCGGAAAGCGAAACCAAAAC+
lin-14#MA0261.1-10.02043489.726970.9986916AGAAAGCGAACAC+
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