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MacroAPE 1083:TTGGGRAATTTA,motif177: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;18.26;30.71;44.82;321.21!2;9.13;16.185;24.485;365.2!3;67.23;5.395;337.81;4.565!4;37.765;5.395;322.455;49.385!5;13.695;5.395;389.27;6.64!6;13...")
 
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10717-109I6;0.154636!10455-106G5;0.436158!10534-107G3;0.194616!10429-106D6;0.104641!10464-106H5;0.419305!10827-111C8;0.446067!10789-110H6;0.539147!10828-111C9;0.422718!10788-110H5;0.153671!10792-110H9;0.36927!10765-110E9;0.780991!10829-111D1;0.0465344!10830-111D2;0.246772!10831-111D3;0.627522!10832-111D4;0.268671!10833-111D5;0.261094!10764-110E8;0.219568!10770-110F5;0.349133!10399-106A3;0.0701819!10400-106A4;0.320356!10405-106A9;0.351087!10834-111D6;0.191828!10835-111D7;0.147649!10836-111D8;0.402982!10837-111D9;0.61287!10699-109G6;0.610006!10802-111A1;0.397482!10796-110I4;0.973742!10010-101C1;0.15851!10810-111A9;0.584387!10421-106C7;0.463012!10708-109H6;0.163426!12235-129G3;0.467739!12236-129G4;0.119789!12237-129G5;0.0501939!10167-103B5;0.0190387!10151-102I7;0.27716!10428-106D5;0.476311!10795-110I3;0.209721!10805-111A4;0.273995!10052-101G7;0.296766!10189-103D9;0.297379!10589-108D4;0.860293!10425-106D2;0.0154627!10427-106D4;0.735368!10702-109G9;0.108111!10432-106D9;0.057802!10496-107C1;0.0595903!10718-109I7;0.421598!10011-101C2;0.350084!10053-101G8;0.404938!10686-109F2;0.781169!10084-102B3;0.252145!10012-101C3;0.341428!10085-102B4;0.357643!10482-107A5;0.0957712!10419-106C5;0.109167!10080-102A8;0.18299!10760-110E4;0.238261!10709-109H7;0.903375!10710-109H8;0.0276482!10703-109H1;0.829358!10719-109I8;0.133349!10642-109A3;0.318883!10177-103C6;0.052498!10164-103B2;0.166416!10173-103C2;0.33005!10166-103B4;0.187834!10083-102B2;0.607034!10188-103D8;0.595591!10552-107I3;0.649025!10553-107I4;0.886989!10013-101C4;0.971082!10536-107G5;0.213337!10618-108G6;0.0740614!10423-106C9;0.268223!10785-110H2;0.469642!12238-129G6;0.40889!12239-129G7;0.958909!12240-129G8;0.154637!10416-106C2;0.833513!10801-110I9;0.0913232!10766-110F1;0.171491!10824-111C5;0.674097!10825-111C6;0.241387!10826-111C7;0.230887!10454-106G4;0.207955!10409-106B4;0.296466!10638-108I8;0.799643!10636-108I6;0.407264!10513-107D9;0.126215!10420-106C6;0.518126!10082-102B1;0.202432!10014-101C5;0.986331!10070-101I7;0.934353!10452-106G2;0.863809!10453-106G3;0.0159262!10449-106F8;0.0289643!10042-101F6;0.0265237!10069-101I6;0.751293!10193-103E4;0.88089!10631-108I1;0.262079!10438-106E6;0.166608!10488-107B2;0.151401!10196-103E7;0.80209!10071-101I8;0.491805!10071-101I8;0.144301!10041-101F5;0.127373!10451-106G1;0.225818!10450-106F9;0.816929!10604-108F1;0.925386!10605-108F2;0.00968364!10606-108F3;0.379233!10603-108E9;0.0459782!10497-107C2;0.192206!10448-106F7;0.974021!10643-109A4;0.146502!10426-106D3;0.387736!10431-106D8;0.621521!10197-103E8;0.762809!10443-106F2;0.615305!10815-111B5;0.820108!10816-111B6;0.971878!10817-111B7;0.769946!10015-101C6;0.883738!10410-106B5;0.375584!10054-101G9;0.849833!10758-110E2;0.82748!10711-109H9;0.789648!10040-101F4;0.77322!10470-106I2;0.273293!10415-106C1;0.157389!10198-103E9;0.177699!10614-108G2;0.908823!10612-108F9;0.337192!10549-107H9;0.403977!10615-108G3;0.340131!10487-107B1;0.165675!10433-106E1;0.334638!10688-109F4;0.245471!10444-106F3;0.399621!10444-106F3;0.701548!10485-107A8;0.690825!10413-106B8;0.905289!10175-103C4;0.824178!10161-103A8;0.183029!12131-128D7;0.644032!10624-108H3;0.296216!10712-109I1;0.931586!10205-103F7;0.0377902!10206-103F8;0.751872!10207-103F9;0.909472!10050-101G5;0.174952!10051-101G6;0.520769!10016-101C7;0.799288!10046-101G1;0.995202!10778-110G4;0.950402!10633-108I3;0.0218336!10818-111B8;0.570931!10819-111B9;0.408541!10820-111C1;0.430823!10484-107A7;0.359032!10808-111A7;0.39233!10169-103B7;0.621666!10153-102I9;0.276195!13425-144D5;0.680315!13433-144E4;0.895302!13437-144E8;0.80924!11904-125F5;0.818093!11905-125F6;0.208512!10039-101F3;0.0959562!10791-110H8;0.276735!10017-101C8;0.740792!10045-101F9;0.412775!10509-107D5;0.392432!10839-111E2;0.977444!10692-109F8;0.653979!10079-102A7;0.372512!10078-102A6;0.780266!10721-110A1;0.965272!10569-108B2;0.831802!10570-108B3;0.236024!10571-108B4;0.527338!10647-109A8;0.523058!10752-110D5;0.531692!10782-110G8;0.715281!10726-110A6;0.915168!10018-101C9;0.938379!10086-102B5;0.233519!10182-103D2;0.213369!10165-103B3;0.301333!10499-107C4;0.673738!10408-106B3;0.557215!10019-101D1;0.0310746!10068-101I5;0.269515!10075-102A3;0.35582!10077-102A5;0.63908!10727-110A7;0.148616!10775-110G1;0.0115193!10412-106B7;0.205401!12231-129F8;0.860758!12232-129F9;0.154562!12233-129G1;0.14826!12234-129G2;0.146387!10414-106B9;0.34107!10170-103B8;0.849082!10183-103D3;0.158809!10150-102I6;0.189854!10174-103C3;0.349199!10155-103A2;0.549513!10038-101F2;0.877188!10838-111E1;0.98248!10759-110E3;0.683934!10514-107E1;0.524074!10465-106H6;0.0573039!10691-109F7;0.0334841!10843-111E6;0.409529!10844-111E7;0.020716!11747-123G1;0.186638!11748-123G2;0.0125794!11749-123G3;0.0263816!11750-123G4;0.182571!11751-123G5;0.38751!11840-124H4;0.258689!11752-123G6;0.329412!11753-123G7;0.142341!11754-123G8;0.135055!11755-123G9;0.0372778!11756-123H1;0.000214302!11833-124G6;0.00071461!11760-123H5;0.00647162!11836-124G9;0.00135159!11758-123H3;0.255599!11835-124G8;0.2887!11762-123H7;0.116284!11838-124H2;0.549338!11757-123H2;0.398582!11759-123H4;0.0265605!11761-123H6;0.00645925!11842-124H6;0.1699!11837-124H1;0.0907334!10568-108B1;0.00516434!13230-141I8;0.104368!13231-141I9;0.00137222!10696-109G3;0.000669767!10493-107B7;0.659675!10494-107B8;0.0552751!10850-111F4;0.988127!10851-111F5;0.608255!10852-111F6;0.425191!10853-111F7;0.12384!10854-111F8;0.920529!10855-111F9;0.197696!10856-111G1;0.715377!10847-111F1;0.7282!10846-111E9;0.836147!10848-111F2;0.754271!10845-111E8;0.846181!10857-111G2;0.195945!10858-111G3;0.916461!10156-103A3;0.909888!11901-125F2;0.549634!11902-125F3;0.171824!11903-125F4;0.200234!10689-109F5;0.180775!10648-109A9;0.89608!10784-110H1;0.848935!10744-110C6;0.0128444!10772-110F7;0.123348!10474-106I6;0.244905!10600-108E6;0.649703!10684-109E9;0.523411!12226-129F3;0.779923!12227-129F4;0.696914!10508-107D4;0.576858!10539-107G8;0.146965!10607-108F4;0.129285!10555-107I6;0.547203!10774-110F9;0.142154!10637-108I7;0.645655!10663-109C6;0.28607!10728-110A8;0.464753!10729-110A9;0.365553!10430-106D7;0.0197635!10730-110B1;0.00269337!10813-111B3;0.349749!10812-111B2;0.182464!10037-101F1;0.10505!10172-103C1;0.335528!10163-103B1;0.135558!10076-102A4;0.423934!10073-102A1;0.249445!10036-101E9;0.103048!10195-103E6;0.389537!10277-104E7;0.42542!10434-106E2;0.325351!10550-107I1;0.827139!10545-107H5;0.753818!10544-107H4;0.572714!10704-109H2;0.14423!10510-107D6;0.310834!10558-107I9;0.782933!10020-101D2;0.4324!10732-110B3;0.195771!10049-101G4;0.92345!10698-109G5;0.250651!10437-106E5;0.480266!10417-106C3;0.0529291!10035-101E8;0.0438234!10171-103B9;0.317547!10157-103A4;0.0867488!10034-101E7;0.435013!10072-101I9;0.294848!10199-103F1;0.189065!10200-103F2;0.701683!10697-109G4;0.689161!10723-110A3;0.347405!10179-103C8;0.867163!10160-103A7;0.283953!10180-103C9;0.406101!10162-103A9;0.452751!10021-101D3;0.643347!10840-111E3;0.418683!10706-109H4;0.0842382!10033-101E6;0.251353!10032-101E5;0.268647!10490-107B4;0.315379!10439-106E7;0.285165!10022-101D4;0.324449!10176-103C5;0.475664!10469-106I1;0.260179!10067-101I4;0.0746552!10411-106B6;0.553724!10471-106I3;0.265617!10030-101E3;0.471494!10475-106I7;0.601145!10787-110H4;0.318063!10477-106I9;0.267699!10695-109G2;0.0488846!11771-123I7;0.0892282!11772-123I8;0.864435!11773-123I9;0.653704!10093-102C3;0.644293!10442-106F1;0.767111!10442-106F1;0.251209!10201-103F3;0.293638!10639-108I9;0.952285!11843-124H7;0.00467193!11841-124H5;0.337629!10693-109F9;0.98969!10436-106E4;0.600599!10483-107A6;0.835303!10282-104F3;0.275733!10023-101D5;0.148027!10066-101I3;0.671777!10065-101I2;0.917286!10800-110I8;0.892642!10610-108F7;0.633886!10841-111E4;0.00603933!10541-107H1;0.138605!10842-111E5;0.294037!10562-108A4;0.366792!10024-101D6;0.502968!10064-101I1;0.462133!10609-108F6;0.387225!10048-101G3;0.487593!10781-110G7;0.589741!10181-103D1;0.0410211!10159-103A6;0.510961!10056-101H2;0.849752!10737-110B8;0.713076!10025-101D7;0.0144876!10044-101F8;0.186764!10424-106D1;0.0984572!10463-106H4;0.322309!10616-108G4;0.894754!10486-107A9;0.123421!10062-101H8;0.253544!10202-103F4;0.810332!10158-103A5;0.821985!10441-106E9;0.990118!10031-101E4;0.408342!10063-101H9;0.352688!10063-101H9;0.176248!11763-123H8;0.0760093!11765-123I1;0.00233808!11768-123I4;0.0105243!10807-111A6;0.0314143!10790-110H7;0.54543!10798-110I6;0.789199!10786-110H3;0.76413!10591-108D6;0.253778!10593-108D8;0.316226!10590-108D5;0.0845244!10026-101D8;0.6251!10096-102C6;0.278111!10168-103B6;0.293256!10154-103A1;0.126312!10209-103G2;0.63052!10061-101H7;0.731925!10027-101D9;0.842185!10043-101F7;0.337854!10783-110G9;0.964826!10028-101E1;0.0707335!10060-101H6;0.698343!10203-103F5;0.972659!10059-101H5;0.616729!10047-101G2;0.537677!10029-101E2;0.642585!10058-101H4;0.255996!10418-106C4;0.749351!10492-107B6;0.748625!10694-109G1;0.0276952!10797-110I5;0.805736!10057-101H3;0.0444125!10100-102D1;0.978688!10055-101H1;0.396159!10204-103F6;0.281708!10191-103E2;0.251477!10563-108A5;0.651468
|name=TTGGGRAATTTA,motif177,CNhs13533,T:415.0(8.21%),B:3157.4(3.92%),P:1e-42
|name=TTGGGRAATTTA,motif177,CNhs13533,T:415.0(8.21%),B:3157.4(3.92%),P:1e-42
|tomtom_result=MZF1_1-4#MA0056.1;-1;0.000776648;0.369684;0.739369;6;TTGGGGAATTTA;TGGGGA;+!CEBPA#MA0102.2;1;0.00491886;2.34138;1;8;TTGGGGAATTTA;ATTGCGAAA;-!ADR1#MA0268.1;0;0.00710705;3.38296;1;7;TTGGGGAATTTA;GTGGGGT;-!Pax4#MA0068.1;16;0.0112699;5.36449;1;12;TTGGGGAATTTA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!Cebpa#MA0102.1;0;0.0121196;5.76895;1;12;TTGGGGAATTTA;TTTCGCAATCTT;+!sd#MA0243.1;0;0.0121196;5.76895;1;12;TTGGGGAATTTA;CCGAGGAATGTC;-!YPR196W#MA0437.1;-1;0.0142663;6.79074;1;9;TTGGGGAATTTA;CGGAGAAAT;-!NFATC2#MA0152.1;-1;0.0147922;7.04108;1;7;TTGGGGAATTTA;TGGAAAA;-!slbo#MA0244.1;-1;0.0156265;7.4382;1;8;TTGGGGAATTTA;TTTGCAAT;-!Su(H)#MA0085.1;2;0.017634;8.3938;1;12;TTGGGGAATTTA;CTGTGGGAAACGAGAT;+!RDR1#MA0360.1;-1;0.0179467;8.54263;1;8;TTGGGGAATTTA;TGCGGAAC;+!SPIB#MA0081.1;-1;0.0191132;9.09789;1;7;TTGGGGAATTTA;AGAGGAA;+!CEP3#MA0282.1;0;0.020567;9.7899;1;8;TTGGGGAATTTA;CTCGGAAA;+
}}
}}

Latest revision as of 13:03, 7 September 2012

Full Name: TTGGGRAATTTA,motif177,CNhs13533,T:415.0(8.21%),B:3157.4(3.92%),P:1e-42

Motif matrix
POACGT
118.2630.7144.82321.21
29.1316.18524.485365.2
367.235.395337.814.565
437.7655.395322.45549.385
513.6955.395389.276.64
6139.02547.725179.2848.555
7386.7820.3357.470.415
8335.328.313.69557.685
914.11121.59554.78224.515
100.41555.1957.055352.335
1134.8653.9552.29273.9
12300.0450.41510.375104.165

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MZF1_1-4#MA0056.1-10.0007766480.3696840.7393696TTGGGGAATTTATGGGGA+
CEBPA#MA0102.210.004918862.3413818TTGGGGAATTTAATTGCGAAA-
ADR1#MA0268.100.007107053.3829617TTGGGGAATTTAGTGGGGT-
Pax4#MA0068.1160.01126995.36449112TTGGGGAATTTAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
Cebpa#MA0102.100.01211965.76895112TTGGGGAATTTATTTCGCAATCTT+
sd#MA0243.100.01211965.76895112TTGGGGAATTTACCGAGGAATGTC-
YPR196W#MA0437.1-10.01426636.7907419TTGGGGAATTTACGGAGAAAT-
NFATC2#MA0152.1-10.01479227.0410817TTGGGGAATTTATGGAAAA-
slbo#MA0244.1-10.01562657.438218TTGGGGAATTTATTTGCAAT-
Su(H)#MA0085.120.0176348.3938112TTGGGGAATTTACTGTGGGAAACGAGAT+
RDR1#MA0360.1-10.01794678.5426318TTGGGGAATTTATGCGGAAC+
SPIB#MA0081.1-10.01911329.0978917TTGGGGAATTTAAGAGGAA+
CEP3#MA0282.100.0205679.789918TTGGGGAATTTACTCGGAAA+
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