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MacroAPE 1083:NAAAGTT,motif944: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;514.602;353.694;359.766;289.938!2;1009.47;200.376;86.526;221.628!3;1246.278;75.9;95.634;100.188!4;1513.446;1.518;1.518;1.518!5;95.634;541.92...")
 
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6;0.633497!10828-111C9;0.241504!10788-110H5;0.429103!10792-110H9;0.117693!10765-110E9;0.488337!10829-111D1;0.60326!10830-111D2;0.286583!10831-111D3;0.325589!10832-111D4;0.253618!10833-111D5;0.784199!10764-110E8;0.318745!10770-110F5;0.462318!10399-106A3;0.0955289!10400-106A4;0.363097!10405-106A9;0.392355!10834-111D6;0.43426!10835-111D7;0.160697!10836-111D8;0.071035!10837-111D9;0.0497933!10699-109G6;0.652903!10802-111A1;0.0426397!10796-110I4;0.0634705!10010-101C1;0.247139!10810-111A9;0.127223!10421-106C7;0.00956974!10708-109H6;0.16246!12235-129G3;0.690486!12236-129G4;0.359377!12237-129G5;0.394816!10167-103B5;0.421558!10151-102I7;0.121923!10428-106D5;0.367929!10795-110I3;0.322922!10805-111A4;0.0441769!10052-101G7;0.429528!10189-103D9;0.135305!10589-108D4;0.0219481!10425-106D2;0.0592541!10427-106D4;0.772541!10702-109G9;0.962655!10432-106D9;0.99434!10496-107C1;0.545367!10718-109I7;0.820675!10011-101C2;0.0633647!10053-101G8;0.0455443!10686-109F2;0.380434!10084-102B3;0.0984082!10012-101C3;0.26885!10085-102B4;0.10741!10482-107A5;0.0834639!10419-106C5;0.777303!10080-102A8;0.717142!10760-110E4;0.0911013!10709-109H7;0.581311!10710-109H8;0.0213928!10703-109H1;0.651712!10719-109I8;0.0152307!10642-109A3;0.887361!10177-103C6;0.427447!10164-103B2;0.43972!10173-103C2;0.157499!10166-103B4;0.186267!10083-102B2;0.39177!10188-103D8;0.110643!10552-107I3;0.292!10553-107I4;0.431097!10013-101C4;0.184704!10536-107G5;0.00601019!10618-108G6;0.214869!10423-106C9;0.10413!10785-110H2;0.0723103!12238-129G6;0.171103!12239-129G7;0.033733!12240-129G8;0.0344074!10416-106C2;0.0362063!10801-110I9;0.115455!10766-110F1;0.0739346!10824-111C5;0.376719!10825-111C6;0.0663338!10826-111C7;0.055794!10454-106G4;0.0619695!10409-106B4;0.107981!10638-108I8;0.382743!10636-108I6;0.450114!10513-107D9;0.942803!10420-106C6;0.125031!10082-102B1;0.774971!10014-101C5;0.194219!10070-101I7;0.175969!10452-106G2;0.055682!10453-106G3;0.585079!10449-106F8;0.702995!10042-101F6;0.828427!10069-101I6;0.151478!10193-103E4;0.450623!10631-108I1;0.16476!10438-106E6;0.237494!10488-107B2;0.540665!10196-103E7;0.148322!10071-101I8;0.00306537!10071-101I8;0.435481!10041-101F5;0.247542!10451-106G1;0.0592064!10450-106F9;0.733438!10604-108F1;0.145187!10605-108F2;0.404271!10606-108F3;0.824518!10603-108E9;0.580658!10497-107C2;0.567538!10448-106F7;0.465101!10643-109A4;0.74758!10426-106D3;0.0147666!10431-106D8;0.722282!10197-103E8;0.996296!10443-106F2;0.034198!10815-111B5;0.219301!10816-111B6;0.650003!10817-111B7;0.75153!10015-101C6;0.636545!10410-106B5;0.296696!10054-101G9;0.95563!10758-110E2;0.796964!10711-109H9;0.338742!10040-101F4;0.785629!10470-106I2;0.109042!10415-106C1;0.875691!10198-103E9;0.846876!10614-108G2;0.335281!10612-108F9;0.966812!10549-107H9;0.833121!10615-108G3;0.411763!10487-107B1;0.816364!10433-106E1;0.27538!10688-109F4;0.700196!10444-106F3;0.77348!10444-106F3;0.0329027!10485-107A8;0.0592186!10413-106B8;0.356679!10175-103C4;0.0393278!10161-103A8;0.0206351!12131-128D7;0.282677!10624-108H3;0.603074!10712-109I1;0.0763836!10205-103F7;0.0750773!10206-103F8;0.164431!10207-103F9;0.663342!10050-101G5;0.148988!10051-101G6;0.273005!10016-101C7;0.174813!10046-101G1;0.699877!10778-110G4;0.913255!10633-108I3;0.456956!10818-111B8;0.222436!10819-111B9;0.0934101!10820-111C1;0.0861526!10484-107A7;0.111013!10808-111A7;0.637248!10169-103B7;0.703987!10153-102I9;0.0780814!13425-144D5;0.483614!13433-144E4;0.00754366!13437-144E8;0.0153634!11904-125F5;0.0148261!11905-125F6;0.421187!10039-101F3;0.319282!10791-110H8;0.0921689!10017-101C8;0.738971!10045-101F9;0.104061!10509-107D5;0.0046198!10839-111E2;0.603703!10692-109F8;0.37802!10079-102A7;0.178804!10078-102A6;0.826799!10721-110A1;0.850196!10569-108B2;0.046219!10570-108B3;0.252164!10571-108B4;0.775019!10647-109A8;0.522291!10752-110D5;0.530417!10782-110G8;0.960339!10726-110A6;0.0973315!10018-101C9;0.702243!10086-102B5;0.815198!10182-103D2;0.859705!10165-103B3;0.20172!10499-107C4;0.123395!10408-106B3;0.495256!10019-101D1;0.239075!10068-101I5;0.07691!10075-102A3;0.0324583!10077-102A5;0.101931!10727-110A7;0.0413704!10775-110G1;0.254898!10412-106B7;0.655957!12231-129F8;0.202822!12232-129F9;0.405486!12233-129G1;0.476105!12234-129G2;0.381262!10414-106B9;0.311875!10170-103B8;0.425233!10183-103D3;0.0363024!10150-102I6;0.0614766!10174-103C3;0.255697!10155-103A2;0.638168!10038-101F2;0.832886!10838-111E1;0.498064!10759-110E3;0.72825!10514-107E1;0.973665!10465-106H6;0.263178!10691-109F7;0.514905!10843-111E6;0.485974!10844-111E7;0.197106!11747-123G1;0.567261!11748-123G2;0.351465!11749-123G3;0.327608!11750-123G4;0.284839!11751-123G5;0.466393!11840-124H4;0.579795!11752-123G6;0.371241!11753-123G7;0.329358!11754-123G8;0.171031!11755-123G9;0.157813!11756-123H1;0.315395!11833-124G6;0.335811!11760-123H5;0.216776!11836-124G9;0.348157!11758-123H3;0.0961708!11835-124G8;0.495726!11762-123H7;0.409029!11838-124H2;0.241461!11757-123H2;0.05492!11759-123H4;0.431696!11761-123H6;0.890698!11842-124H6;0.126558!11837-124H1;0.557667!10568-108B1;0.217671!13230-141I8;0.162472!13231-141I9;0.176469!10696-109G3;0.148359!10493-107B7;0.380117!10494-107B8;0.113763!10850-111F4;0.405641!10851-111F5;0.905188!10852-111F6;0.110907!10853-111F7;0.240732!10854-111F8;0.0420108!10855-111F9;0.805872!10856-111G1;0.706471!10847-111F1;0.00405194!10846-111E9;0.799006!10848-111F2;0.117839!10845-111E8;0.114585!10857-111G2;0.797115!10858-111G3;0.0477589!10156-103A3;0.0221902!11901-125F2;0.299076!11902-125F3;0.196071!11903-125F4;0.549802!10689-109F5;0.377956!10648-109A9;0.353258!10784-110H1;0.144014!10744-110C6;0.970624!10772-110F7;0.58168!10474-106I6;0.367377!10600-108E6;0.641913!10684-109E9;0.931562!12226-129F3;0.952324!12227-129F4;0.029005!10508-107D4;0.325963!10539-107G8;0.0813527!10607-108F4;0.700131!10555-107I6;0.511468!10774-110F9;0.193385!10637-108I7;0.99971!10663-109C6;0.232024!10728-110A8;0.727925!10729-110A9;0.727795!10430-106D7;0.677561!10730-110B1;0.62924!10813-111B3;0.0335471!10812-111B2;0.554788!10037-101F1;0.844642!10172-103C1;0.126402!10163-103B1;0.0551005!10076-102A4;0.351251!10073-102A1;0.101644!10036-101E9;0.0424831!10195-103E6;0.0810995!10277-104E7;0.112892!10434-106E2;0.0340291!10550-107I1;0.989161!10545-107H5;0.825987!10544-107H4;0.165398!10704-109H2;0.0921416!10510-107D6;0.132732!10558-107I9;0.997531!10020-101D2;0.146755!10732-110B3;0.000280005!10049-101G4;0.402237!10698-109G5;0.670189!10437-106E5;0.0594399!10417-106C3;0.955058!10035-101E8;0.330117!10171-103B9;0.0688198!10157-103A4;0.0850485!10034-101E7;0.198762!10072-101I9;0.0663943!10199-103F1;0.135494!10200-103F2;0.513581!10697-109G4;0.407321!10723-110A3;0.514945!10179-103C8;0.066216!10160-103A7;0.22453!10180-103C9;0.387661!10162-103A9;0.0147078!10021-101D3;0.0442663!10840-111E3;0.156068!10706-109H4;0.801981!10033-101E6;0.728424!10032-101E5;0.145894!10490-107B4;0.0556093!10439-106E7;0.631713!10022-101D4;0.958143!10176-103C5;0.0268291!10469-106I1;0.0297234!10067-101I4;0.792604!10411-106B6;0.0433072!10471-106I3;0.263142!10030-101E3;0.70817!10475-106I7;0.5353!10787-110H4;0.096911!10477-106I9;0.255896!10695-109G2;0.239826!11771-123I7;0.143152!11772-123I8;0.0229181!11773-123I9;0.879487!10093-102C3;0.307187!10442-106F1;0.337793!10442-106F1;0.646804!10201-103F3;0.666154!10639-108I9;0.00594805!11843-124H7;0.853967!11841-124H5;0.634493!10693-109F9;0.262115!10436-106E4;0.451564!10483-107A6;0.353936!10282-104F3;0.170692!10023-101D5;0.228514!10066-101I3;0.749059!10065-101I2;0.529383!10800-110I8;0.140064!10610-108F7;0.132398!10841-111E4;0.0128919!10541-107H1;0.951335!10842-111E5;0.547334!10562-108A4;0.0311064!10024-101D6;0.172855!10064-101I1;0.272648!10609-108F6;0.191007!10048-101G3;0.186954!10781-110G7;0.0899818!10181-103D1;0.040829!10159-103A6;0.717428!10056-101H2;0.798332!10737-110B8;0.482566!10025-101D7;0.311608!10044-101F8;0.0848702!10424-106D1;0.117588!10463-106H4;0.933447!10616-108G4;0.443964!10486-107A9;0.9914!10062-101H8;0.676896!10202-103F4;0.323742!10158-103A5;0.931866!10441-106E9;0.491396!10031-101E4;0.0402455!10063-101H9;0.0994194!10063-101H9;0.12434!11763-123H8;0.305823!11765-123I1;0.265581!11768-123I4;0.369865!10807-111A6;0.616939!10790-110H7;0.258791!10798-110I6;0.54693!10786-110H3;0.336295!10591-108D6;0.151211!10593-108D8;0.170776!10590-108D5;0.237601!10026-101D8;0.0635653!10096-102C6;0.561921!10168-103B6;0.0726575!10154-103A1;0.199942!10209-103G2;0.50188!10061-101H7;0.938752!10027-101D9;0.16359!10043-101F7;0.698942!10783-110G9;0.216321!10028-101E1;0.758089!10060-101H6;0.194564!10203-103F5;0.200826!10059-101H5;0.62466!10047-101G2;0.873959!10029-101E2;0.663482!10058-101H4;0.200851!10418-106C4;0.189812!10492-107B6;0.047508!10694-109G1;0.367514!10797-110I5;0.231275!10057-101H3;0.773138!10100-102D1;0.65694!10055-101H1;0.0112228!10204-103F6;0.0018414!10191-103E2;0.010032!10563-108A5;0.0655097
|name=NAAAGTT,motif944,CNhs12855,T:1518.0(46.39%),B:26296.6(37.07%),P:1e-27
|name=NAAAGTT,motif944,CNhs12855,T:1518.0(46.39%),B:26296.6(37.07%),P:1e-27
|tomtom_result=PBF#MA0064.1;-1;0.00647191;3.08063;1;5;AAAAGTT;AAAGC;+!IRF1#MA0050.1;0;0.0104508;4.9746;1;7;AAAAGTT;GAAAGCGAAACC;+!HNF4A#MA0114.1;4;0.0127416;6.06502;1;7;AAAAGTT;AGGCCAAAGGTCA;+!Dof3#MA0021.1;-1;0.0134719;6.41263;1;6;AAAAGTT;AAAGCG;+!MNB1A#MA0053.1;-1;0.0144146;6.86137;1;5;AAAAGTT;AAAGC;+
}}
}}

Latest revision as of 13:05, 7 September 2012

Full Name: NAAAGTT,motif944,CNhs12855,T:1518.0(46.39%),B:26296.6(37.07%),P:1e-27

Motif matrix
POACGT
1514.602353.694359.766289.938
21009.47200.37686.526221.628
31246.27875.995.634100.188
41513.4461.5181.5181.518
595.634541.926878.9221.518
692.598217.074132.0661076.262
76.07286.526493.35932.052

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PBF#MA0064.1-10.006471913.0806315AAAAGTTAAAGC+
IRF1#MA0050.100.01045084.974617AAAAGTTGAAAGCGAAACC+
HNF4A#MA0114.140.01274166.0650217AAAAGTTAGGCCAAAGGTCA+
Dof3#MA0021.1-10.01347196.4126316AAAAGTTAAAGCG+
MNB1A#MA0053.1-10.01441466.8613715AAAAGTTAAAGC+
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