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MacroAPE 1083:CNhs12316 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;229.19921248016144;1145.1300536864123;140.44692956109546;81.92577718609594!2;1166.531635204909;222.13534618396739;50.3166092927235;157.71838...")
 
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82-129A4;0.580975!12183-129A5;0.744288!12184-129A6;0.36559!10809-111A8;0.913901!10597-108E3;0.328587!10717-109I6;0.107527!10455-106G5;0.00510149!10534-107G3;0.167666!10429-106D6;0.370788!10464-106H5;0.286688!10827-111C8;0.0991359!10789-110H6;0.869529!10828-111C9;0.526757!10788-110H5;0.428039!10792-110H9;0.562834!10765-110E9;0.356181!10829-111D1;0.513665!10830-111D2;0.956396!10831-111D3;0.219042!10832-111D4;0.782108!10833-111D5;0.794988!10764-110E8;0.62353!10770-110F5;0.470172!10399-106A3;0.837894!10400-106A4;0.149993!10405-106A9;0.179114!10834-111D6;0.197943!10835-111D7;0.24822!10836-111D8;0.941073!10837-111D9;0.270336!10699-109G6;0.44089!10802-111A1;0.215996!10796-110I4;0.876474!10010-101C1;0.0206742!10810-111A9;0.00101904!10421-106C7;0.0936497!10708-109H6;0.460441!12235-129G3;0.120519!12236-129G4;0.0521027!12237-129G5;0.187722!10167-103B5;0.254946!10151-102I7;0.000502045!10428-106D5;0.00026289!10795-110I3;0.095128!10805-111A4;0.631308!10052-101G7;0.0961389!10189-103D9;0.0128434!10589-108D4;0.00403091!10425-106D2;0.98469!10427-106D4;0.936427!10702-109G9;0.839155!10432-106D9;0.522202!10496-107C1;0.0124193!10718-109I7;0.858187!10011-101C2;0.622567!10053-101G8;0.0123655!10686-109F2;0.868651!10084-102B3;0.705514!10012-101C3;0.0011266!10085-102B4;0.000513148!10482-107A5;0.00399062!10419-106C5;0.41635!10080-102A8;0.163311!10760-110E4;0.0531751!10709-109H7;0.0478138!10710-109H8;0.372794!10703-109H1;0.103606!10719-109I8;0.813444!10642-109A3;0.53365!10177-103C6;0.774945!10164-103B2;0.000149347!10173-103C2;0.00127377!10166-103B4;0.00250735!10083-102B2;0.00164509!10188-103D8;0.00285621!10552-107I3;0.00116186!10553-107I4;0.211358!10013-101C4;0.0549566!10536-107G5;0.00911484!10618-108G6;0.343625!10423-106C9;0.00993146!10785-110H2;0.0178125!12238-129G6;0.018712!12239-129G7;0.599411!12240-129G8;0.347794!10416-106C2;0.974586!10801-110I9;0.121226!10766-110F1;0.636086!10824-111C5;0.269887!10825-111C6;0.128606!10826-111C7;0.138824!10454-106G4;0.130487!10409-106B4;0.455141!10638-108I8;0.758789!10636-108I6;0.150485!10513-107D9;0.0057092!10420-106C6;0.00023048!10082-102B1;0.404355!10014-101C5;0.195309!10070-101I7;0.0411217!10452-106G2;0.0871864!10453-106G3;0.583082!10449-106F8;0.901932!10042-101F6;0.972695!10069-101I6;0.000136673!10193-103E4;0.00267727!10631-108I1;0.000615441!10438-106E6;0.369025!10488-107B2;0.445085!10196-103E7;0.00112657!10071-101I8;0.0972566!10071-101I8;0.0745127!10041-101F5;0.00175674!10451-106G1;0.000318768!10450-106F9;0.0631306!10604-108F1;0.283334!10605-108F2;0.20529!10606-108F3;0.38145!10603-108E9;0.82772!10497-107C2;0.411611!10448-106F7;0.0816824!10643-109A4;0.21699!10426-106D3;9.98418e-07!10431-106D8;0.00512098!10197-103E8;0.00462829!10443-106F2;0.0205447!10815-111B5;0.869277!10816-111B6;0.0146534!10817-111B7;0.0257246!10015-101C6;0.00508955!10410-106B5;0.219709!10054-101G9;0.308191!10758-110E2;8.04542e-05!10711-109H9;0.677168!10040-101F4;0.968699!10470-106I2;0.000594057!10415-106C1;0.0231618!10198-103E9;0.332089!10614-108G2;0.0304504!10612-108F9;0.238969!10549-107H9;0.143861!10615-108G3;0.164959!10487-107B1;0.579815!10433-106E1;0.140629!10688-109F4;0.150573!10444-106F3;0.0350199!10444-106F3;0.0320418!10485-107A8;0.055453!10413-106B8;0.0590527!10175-103C4;0.241874!10161-103A8;0.000303579!12131-128D7;0.00016241!10624-108H3;0.273842!10712-109I1;0.795975!10205-103F7;0.842458!10206-103F8;0.000852147!10207-103F9;1.53205e-05!10050-101G5;0.00101011!10051-101G6;0.0497667!10016-101C7;5.32536e-05!10046-101G1;0.004005!10778-110G4;0.000322381!10633-108I3;0.30947!10818-111B8;0.830173!10819-111B9;0.0323454!10820-111C1;0.0208122!10484-107A7;0.0289674!10808-111A7;0.407833!10169-103B7;0.332056!10153-102I9;0.000615789!13425-144D5;0.000192257!13433-144E4;0.00429512!13437-144E8;0.00152232!11904-125F5;0.00229296!11905-125F6;0.404337!10039-101F3;0.831036!10791-110H8;0.000457394!10017-101C8;0.0157754!10045-101F9;0.291545!10509-107D5;0.0190903!10839-111E2;0.401569!10692-109F8;0.795402!10079-102A7;0.000302043!10078-102A6;0.000957302!10721-110A1;0.0093527!10569-108B2;0.343899!10570-108B3;0.242334!10571-108B4;0.266581!10647-109A8;0.440713!10752-110D5;0.0373967!10782-110G8;0.217813!10726-110A6;0.271098!10018-101C9;0.0659392!10086-102B5;0.775703!10182-103D2;0.670172!10165-103B3;0.000577237!10499-107C4;0.000610802!10408-106B3;0.172556!10019-101D1;0.142718!10068-101I5;0.0849094!10075-102A3;0.0124681!10077-102A5;0.214372!10727-110A7;0.376578!10775-110G1;0.343373!10412-106B7;0.101136!12231-129F8;0.609291!12232-129F9;0.0108093!12233-129G1;0.00526923!12234-129G2;0.0275312!10414-106B9;0.0197308!10170-103B8;0.853749!10183-103D3;0.000663442!10150-102I6;0.000647051!10174-103C3;0.000665739!10155-103A2;0.000380233!10038-101F2;0.000264962!10838-111E1;0.00011145!10759-110E3;0.474977!10514-107E1;0.144989!10465-106H6;0.424339!10691-109F7;0.134959!10843-111E6;0.0642335!10844-111E7;0.991554!11747-123G1;0.461326!11748-123G2;0.13295!11749-123G3;0.226416!11750-123G4;0.281468!11751-123G5;0.526369!11840-124H4;0.600937!11752-123G6;0.33477!11753-123G7;0.239348!11754-123G8;0.950208!11755-123G9;0.0438729!11756-123H1;0.00662671!11833-124G6;0.18899!11760-123H5;0.945973!11836-124G9;0.318181!11758-123H3;0.41548!11835-124G8;0.213064!11762-123H7;0.442437!11838-124H2;0.267456!11757-123H2;0.0717182!11759-123H4;0.511751!11761-123H6;0.71787!11842-124H6;0.37333!11837-124H1;0.71844!10568-108B1;0.367268!13230-141I8;0.130449!13231-141I9;0.372328!10696-109G3;0.268682!10493-107B7;0.150985!10494-107B8;0.167376!10850-111F4;0.000302383!10851-111F5;0.00124701!10852-111F6;0.113012!10853-111F7;0.0594557!10854-111F8;0.00131088!10855-111F9;0.982882!10856-111G1;0.00369996!10847-111F1;0.00448626!10846-111E9;0.0894444!10848-111F2;0.0112855!10845-111E8;0.0387827!10857-111G2;0.193725!10858-111G3;0.0129686!10156-103A3;0.134737!11901-125F2;0.000431291!11902-125F3;0.490549!11903-125F4;0.656973!10689-109F5;0.505208!10648-109A9;0.00288124!10784-110H1;0.288858!10744-110C6;0.00109377!10772-110F7;0.922156!10474-106I6;0.684007!10600-108E6;0.369608!10684-109E9;0.0372236!12226-129F3;0.256426!12227-129F4;0.012269!10508-107D4;0.833422!10539-107G8;0.544103!10607-108F4;0.858855!10555-107I6;0.486216!10774-110F9;0.290084!10637-108I7;0.297263!10663-109C6;0.123612!10728-110A8;0.45822!10729-110A9;0.193143!10430-106D7;0.697135!10730-110B1;0.575054!10813-111B3;0.998143!10812-111B2;0.945182!10037-101F1;0.00282256!10172-103C1;0.000466681!10163-103B1;0.00126892!10076-102A4;0.000436285!10073-102A1;0.00158985!10036-101E9;0.00541823!10195-103E6;0.00081963!10277-104E7;0.000229274!10434-106E2;0.00039411!10550-107I1;0.00593257!10545-107H5;0.10791!10544-107H4;0.00326955!10704-109H2;0.0158515!10510-107D6;0.313444!10558-107I9;0.913925!10020-101D2;0.304273!10732-110B3;4.86488e-05!10049-101G4;0.880143!10698-109G5;0.346324!10437-106E5;0.025642!10417-106C3;0.299023!10035-101E8;0.0849637!10171-103B9;0.000650673!10157-103A4;0.000684021!10034-101E7;0.000305078!10072-101I9;0.000621919!10199-103F1;0.00333763!10200-103F2;0.174108!10697-109G4;0.0122662!10723-110A3;0.132202!10179-103C8;0.000781359!10160-103A7;0.0106068!10180-103C9;0.00969405!10162-103A9;0.0130981!10021-101D3;0.0128942!10840-111E3;0.000466907!10706-109H4;0.796375!10033-101E6;0.131319!10032-101E5;0.000343408!10490-107B4;0.000846643!10439-106E7;0.00580993!10022-101D4;0.0620415!10176-103C5;0.00971126!10469-106I1;0.00052179!10067-101I4;0.384156!10411-106B6;0.00870578!10471-106I3;0.430463!10030-101E3;0.249274!10475-106I7;0.000101604!10787-110H4;0.939918!10477-106I9;0.173534!10695-109G2;0.923629!11771-123I7;0.800715!11772-123I8;0.0797024!11773-123I9;0.580171!10093-102C3;0.558223!10442-106F1;0.000523521!10442-106F1;0.000431028!10201-103F3;0.00477094!10639-108I9;0.0301331!11843-124H7;0.131387!11841-124H5;0.335317!10693-109F9;0.277644!10436-106E4;0.173297!10483-107A6;0.0560687!10282-104F3;0.00777251!10023-101D5;0.00253103!10066-101I3;0.0153548!10065-101I2;0.0326007!10800-110I8;0.00621533!10610-108F7;0.142567!10841-111E4;0.546271!10541-107H1;0.412366!10842-111E5;0.482445!10562-108A4;0.678946!10024-101D6;0.717591!10064-101I1;0.225535!10609-108F6;0.38895!10048-101G3;0.334418!10781-110G7;0.00890863!10181-103D1;0.373246!10159-103A6;6.86908e-05!10056-101H2;0.000442065!10737-110B8;0.000335084!10025-101D7;0.222747!10044-101F8;0.397331!10424-106D1;0.0178868!10463-106H4;0.633283!10616-108G4;0.0353027!10486-107A9;0.0207727!10062-101H8;0.00699072!10202-103F4;0.0913207!10158-103A5;0.00441961!10441-106E9;0.000691436!10031-101E4;0.514054!10063-101H9;0.000743089!10063-101H9;0.00178111!11763-123H8;0.00282634!11765-123I1;0.0999469!11768-123I4;0.500197!10807-111A6;0.215414!10790-110H7;0.00750285!10798-110I6;0.0115504!10786-110H3;0.356037!10591-108D6;3.20764e-05!10593-108D8;0.058935!10590-108D5;0.0194248!10026-101D8;0.00195677!10096-102C6;0.259191!10168-103B6;0.890688!10154-103A1;0.000601491!10209-103G2;0.000242127!10061-101H7;0.030941!10027-101D9;0.0551696!10043-101F7;0.128744!10783-110G9;0.00604873!10028-101E1;0.851417!10060-101H6;0.0997118!10203-103F5;0.127304!10059-101H5;0.018827!10047-101G2;0.0327209!10029-101E2;0.0181742!10058-101H4;0.0920679!10418-106C4;0.0244347!10492-107B6;0.0778538!10694-109G1;0.0808264!10797-110I5;0.769491!10057-101H3;0.961065!10100-102D1;0.456482!10055-101H1;0.000148025!10204-103F6;0.288982!10191-103E2;0.0110913!10563-108A5;0.00131128
|name=CNhs12316_bu_f2
|name=CNhs12316_bu_f2
|tomtom_result=RAP1#MA0359.1;0;0.00265383;1.26322;1;10;CACACAGACACA;CACCCATACA;+!RREB1#MA0073.1;8;0.00729684;3.47329;1;12;CACACAGACACA;CCCCAAACCACCCCCCCCCC;+!CRZ1#MA0285.1;-2;0.00938988;4.46958;1;9;CACACAGACACA;CTAAGCCAC;+!NDT80#MA0343.1;8;0.0116169;5.52965;1;12;CACACAGACACA;TTTCCGGCCACAAAAACGCAA;+!Arnt::Ahr#MA0006.1;0;0.0117738;5.60434;1;6;CACACAGACACA;CACGCA;-!MET28#MA0332.1;-1;0.0138424;6.58898;1;6;CACACAGACACA;CCACAG;-!HMG-I/Y#MA0045.1;3;0.0150045;7.14214;1;12;CACACAGACACA;CAACAAATGGAAAAAC;+!Egr1#MA0162.1;-1;0.0151422;7.20771;1;11;CACACAGACACA;CCGCCCACGCA;-!FOXF2#MA0030.1;0;0.0198406;9.44413;1;12;CACACAGACACA;CAAACGTAAACAAT;+
}}
}}

Latest revision as of 13:12, 7 September 2012

Full Name: CNhs12316_bu_f2

Motif matrix
POACGT
1229.199212480161441145.1300536864123140.4469295610954681.92577718609594
21166.531635204909222.1353461839673950.3166092927235157.7183822321663
363.5606639815404861355.49107202531776.4682619698167101.18197493709324
41265.0379484979824111.38391810870516135.8627003157946384.41740599128634
515.9677201485147521576.54259227677024.1916604884827130.0
61596.70197291376780.00.00.0
70.0579.021742282814983.564106671062234.116123959890565
81122.1459816274878449.847445347850419.9373005097795434.771245428647964
9557.79479436737621032.12303202207362.31360813711493044.4705383872014135
101299.686315112857817.70028111199568258.6696460824536520.64573060646024
1154.765202566818141390.7104843462623136.698988146288414.527297854399333
121414.6730771426874132.3378188906739315.4307950014764534.26028187892965

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RAP1#MA0359.100.002653831.26322110CACACAGACACACACCCATACA+
RREB1#MA0073.180.007296843.47329112CACACAGACACACCCCAAACCACCCCCCCCCC+
CRZ1#MA0285.1-20.009389884.4695819CACACAGACACACTAAGCCAC+
NDT80#MA0343.180.01161695.52965112CACACAGACACATTTCCGGCCACAAAAACGCAA+
Arnt::Ahr#MA0006.100.01177385.6043416CACACAGACACACACGCA-
MET28#MA0332.1-10.01384246.5889816CACACAGACACACCACAG-
HMG-I/Y#MA0045.130.01500457.14214112CACACAGACACACAACAAATGGAAAAAC+
Egr1#MA0162.1-10.01514227.20771111CACACAGACACACCGCCCACGCA-
FOXF2#MA0030.100.01984069.44413112CACACAGACACACAAACGTAAACAAT+
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