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MacroAPE 1083:CNhs12522 bl f0: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;315.8305359681451;10.963014112926913;434.6508041447806;442.1225969024304!2;161.61133842806558;364.3078126194458;653.7954770103275;23.8523230...")
 
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289!11216-116B1;0.022563!12179-129A1;0.143315!12180-129A2;0.00225295!12181-129A3;0.00255739!12176-128I7;0.00327459!12177-128I8;0.00400723!12182-129A4;0.00663737!12183-129A5;0.00196201!12184-129A6;0.00465369!10809-111A8;0.00332484!10597-108E3;0.192444!10717-109I6;0.0624094!10455-106G5;0.0254758!10534-107G3;0.26326!10429-106D6;0.624247!10464-106H5;0.191496!10827-111C8;0.527257!10789-110H6;0.0060528!10828-111C9;0.0375648!10788-110H5;0.00800575!10792-110H9;0.0817432!10765-110E9;0.077018!10829-111D1;0.292126!10830-111D2;0.0614493!10831-111D3;0.106355!10832-111D4;0.0046871!10833-111D5;0.306059!10764-110E8;0.314836!10770-110F5;0.0762188!10399-106A3;0.0766037!10400-106A4;0.215301!10405-106A9;0.196945!10834-111D6;0.162452!10835-111D7;0.0565339!10836-111D8;0.827319!10837-111D9;0.602629!10699-109G6;0.103784!10802-111A1;0.0393583!10796-110I4;0.513572!10010-101C1;0.0683122!10810-111A9;0.0859152!10421-106C7;0.0483511!10708-109H6;0.125708!12235-129G3;0.00878222!12236-129G4;0.365746!12237-129G5;0.166969!10167-103B5;0.679776!10151-102I7;0.335727!10428-106D5;0.216934!10795-110I3;0.497357!10805-111A4;0.763486!10052-101G7;0.0564813!10189-103D9;0.299313!10589-108D4;0.0509684!10425-106D2;0.203987!10427-106D4;0.0288015!10702-109G9;0.0296251!10432-106D9;0.131937!10496-107C1;0.193589!10718-109I7;0.652487!10011-101C2;0.452538!10053-101G8;0.38595!10686-109F2;0.00983707!10084-102B3;0.0141589!10012-101C3;0.380567!10085-102B4;0.279504!10482-107A5;0.631042!10419-106C5;0.229771!10080-102A8;0.773987!10760-110E4;0.435383!10709-109H7;0.0409673!10710-109H8;0.553036!10703-109H1;0.0213237!10719-109I8;0.0523294!10642-109A3;0.182427!10177-103C6;0.0809913!10164-103B2;0.233585!10173-103C2;0.281744!10166-103B4;0.859241!10083-102B2;0.636808!10188-103D8;0.806378!10552-107I3;0.594642!10553-107I4;0.00963424!10013-101C4;0.0741795!10536-107G5;0.501056!10618-108G6;0.0431661!10423-106C9;0.00429719!10785-110H2;0.0136265!12238-129G6;0.000926272!12239-129G7;0.825095!12240-129G8;0.0214285!10416-106C2;0.392237!10801-110I9;0.265488!10766-110F1;0.0246322!10824-111C5;0.0743923!10825-111C6;0.343786!10826-111C7;0.23343!10454-106G4;0.478391!10409-106B4;0.113283!10638-108I8;0.126491!10636-108I6;0.0516704!10513-107D9;0.252316!10420-106C6;0.0956451!10082-102B1;0.0723398!10014-101C5;0.783079!10070-101I7;0.203337!10452-106G2;0.245885!10453-106G3;0.747398!10449-106F8;0.965863!10042-101F6;0.74819!10069-101I6;0.279647!10193-103E4;0.752455!10631-108I1;0.309223!10438-106E6;0.153401!10488-107B2;0.133129!10196-103E7;0.00665931!10071-101I8;0.831192!10071-101I8;0.0649736!10041-101F5;0.52889!10451-106G1;0.0476367!10450-106F9;0.0204901!10604-108F1;0.0283123!10605-108F2;0.0309882!10606-108F3;0.0222254!10603-108E9;0.0504667!10497-107C2;0.193138!10448-106F7;0.633482!10643-109A4;0.0670091!10426-106D3;0.15287!10431-106D8;0.0649334!10197-103E8;0.0338156!10443-106F2;0.517979!10815-111B5;0.0118743!10816-111B6;0.0021075!10817-111B7;0.00151823!10015-101C6;0.00302113!10410-106B5;0.221474!10054-101G9;0.055844!10758-110E2;0.930806!10711-109H9;0.83444!10040-101F4;0.741021!10470-106I2;0.356353!10415-106C1;0.0160939!10198-103E9;0.26218!10614-108G2;0.277592!10612-108F9;0.00252564!10549-107H9;0.0101348!10615-108G3;0.0567755!10487-107B1;0.157181!10433-106E1;0.104291!10688-109F4;0.00382769!10444-106F3;0.00206328!10444-106F3;0.0907066!10485-107A8;0.154699!10413-106B8;0.15986!10175-103C4;0.0278621!10161-103A8;0.367892!12131-128D7;0.186685!10624-108H3;0.201158!10712-109I1;0.0358047!10205-103F7;0.00583202!10206-103F8;0.658839!10207-103F9;0.423419!10050-101G5;0.505251!10051-101G6;0.474601!10016-101C7;0.968237!10046-101G1;0.345565!10778-110G4;0.991952!10633-108I3;0.441672!10818-111B8;0.396975!10819-111B9;0.115625!10820-111C1;0.116792!10484-107A7;0.134041!10808-111A7;0.0587923!10169-103B7;0.0525791!10153-102I9;0.307187!13425-144D5;0.239612!13433-144E4;0.123261!13437-144E8;0.107221!11904-125F5;0.166191!11905-125F6;0.0400276!10039-101F3;0.239821!10791-110H8;0.289532!10017-101C8;0.104215!10045-101F9;0.956064!10509-107D5;0.388363!10839-111E2;0.560202!10692-109F8;0.0113243!10079-102A7;0.0158559!10078-102A6;0.230806!10721-110A1;0.474016!10569-108B2;0.0215787!10570-108B3;0.0810392!10571-108B4;0.889249!10647-109A8;0.723073!10752-110D5;0.00518669!10782-110G8;0.110288!10726-110A6;0.0799146!10018-101C9;0.239541!10086-102B5;0.370132!10182-103D2;0.933751!10165-103B3;0.40615!10499-107C4;0.317306!10408-106B3;0.125005!10019-101D1;0.093454!10068-101I5;0.121973!10075-102A3;0.255977!10077-102A5;0.100605!10727-110A7;0.00775962!10775-110G1;0.190746!10412-106B7;0.0376557!12231-129F8;0.647844!12232-129F9;0.884127!12233-129G1;0.573224!12234-129G2;0.642439!10414-106B9;0.846033!10170-103B8;0.00920936!10183-103D3;0.514687!10150-102I6;0.343661!10174-103C3;0.257768!10155-103A2;0.65697!10038-101F2;0.149769!10838-111E1;0.203951!10759-110E3;0.083828!10514-107E1;0.0337619!10465-106H6;0.0513222!10691-109F7;0.0512352!10843-111E6;0.125037!10844-111E7;0.334237!11747-123G1;0.106253!11748-123G2;0.0506935!11749-123G3;0.0217966!11750-123G4;0.0427943!11751-123G5;0.0839181!11840-124H4;0.0235992!11752-123G6;0.0054417!11753-123G7;0.497398!11754-123G8;0.332278!11755-123G9;0.113506!11756-123H1;0.667282!11833-124G6;0.650454!11760-123H5;0.751354!11836-124G9;0.363538!11758-123H3;0.649957!11835-124G8;0.269233!11762-123H7;0.323171!11838-124H2;0.228194!11757-123H2;0.531827!11759-123H4;0.80857!11761-123H6;0.527423!11842-124H6;0.463816!11837-124H1;0.478131!10568-108B1;0.325719!13230-141I8;0.075971!13231-141I9;0.00259051!10696-109G3;0.00113686!10493-107B7;0.0104077!10494-107B8;0.0283029!10850-111F4;0.0319486!10851-111F5;0.00360832!10852-111F6;0.0147318!10853-111F7;0.00233821!10854-111F8;0.0842654!10855-111F9;0.177795!10856-111G1;0.0014892!10847-111F1;2.73723e-05!10846-111E9;0.148541!10848-111F2;0.0188237!10845-111E8;0.0915598!10857-111G2;0.255387!10858-111G3;0.0219188!10156-103A3;0.271939!11901-125F2;0.265374!11902-125F3;0.180542!11903-125F4;0.29889!10689-109F5;0.253462!10648-109A9;0.020231!10784-110H1;0.0661275!10744-110C6;0.454469!10772-110F7;0.0199476!10474-106I6;0.283052!10600-108E6;0.126052!10684-109E9;0.0201875!12226-129F3;0.0516379!12227-129F4;0.141297!10508-107D4;0.574999!10539-107G8;0.135675!10607-108F4;0.403326!10555-107I6;0.00309251!10774-110F9;0.239841!10637-108I7;0.0229532!10663-109C6;0.164185!10728-110A8;0.0475155!10729-110A9;0.0809487!10430-106D7;0.0171438!10730-110B1;0.757957!10813-111B3;0.110463!10812-111B2;0.0150623!10037-101F1;0.0142961!10172-103C1;0.259482!10163-103B1;0.389319!10076-102A4;0.23514!10073-102A1;0.467944!10036-101E9;0.682567!10195-103E6;0.563263!10277-104E7;0.35316!10434-106E2;0.732671!10550-107I1;0.0538527!10545-107H5;0.0342045!10544-107H4;0.732009!10704-109H2;0.074839!10510-107D6;0.00791848!10558-107I9;0.435729!10020-101D2;0.00520681!10732-110B3;0.952284!10049-101G4;0.155295!10698-109G5;0.372352!10437-106E5;0.0156874!10417-106C3;0.0836037!10035-101E8;0.555114!10171-103B9;0.373834!10157-103A4;0.464509!10034-101E7;0.25107!10072-101I9;0.384732!10199-103F1;0.713753!10200-103F2;0.144556!10697-109G4;0.534523!10723-110A3;0.670994!10179-103C8;0.00443752!10160-103A7;0.954042!10180-103C9;0.534101!10162-103A9;0.746011!10021-101D3;0.896257!10840-111E3;0.923703!10706-109H4;0.062265!10033-101E6;0.14867!10032-101E5;0.221945!10490-107B4;0.452305!10439-106E7;0.0113476!10022-101D4;0.107269!10176-103C5;0.437188!10469-106I1;0.49763!10067-101I4;0.0693533!10411-106B6;0.956719!10471-106I3;0.170591!10030-101E3;0.0600175!10475-106I7;0.838548!10787-110H4;0.0896799!10477-106I9;0.0702034!10695-109G2;0.108687!11771-123I7;0.0270375!11772-123I8;0.213201!11773-123I9;0.485753!10093-102C3;0.656906!10442-106F1;0.366274!10442-106F1;0.129521!10201-103F3;0.211127!10639-108I9;0.952685!11843-124H7;0.0018544!11841-124H5;0.142301!10693-109F9;0.749731!10436-106E4;0.0376739!10483-107A6;0.0652238!10282-104F3;0.857915!10023-101D5;0.761914!10066-101I3;0.785113!10065-101I2;0.952124!10800-110I8;0.602715!10610-108F7;0.0455814!10841-111E4;0.358344!10541-107H1;0.0590786!10842-111E5;0.046987!10562-108A4;0.0654176!10024-101D6;0.380652!10064-101I1;0.0766694!10609-108F6;0.126328!10048-101G3;0.284229!10781-110G7;0.994068!10181-103D1;0.33049!10159-103A6;0.306335!10056-101H2;0.0624992!10737-110B8;0.877855!10025-101D7;0.0114982!10044-101F8;0.0157666!10424-106D1;0.0285751!10463-106H4;0.102513!10616-108G4;0.0118775!10486-107A9;0.688769!10062-101H8;0.0978401!10202-103F4;0.696665!10158-103A5;0.171883!10441-106E9;0.135712!10031-101E4;0.0355444!10063-101H9;0.411103!10063-101H9;0.504313!11763-123H8;0.0543831!11765-123I1;0.0676505!11768-123I4;0.00287235!10807-111A6;0.00507946!10790-110H7;0.118859!10798-110I6;0.184011!10786-110H3;0.214227!10591-108D6;0.212101!10593-108D8;0.241983!10590-108D5;0.711589!10026-101D8;0.501065!10096-102C6;0.542284!10168-103B6;0.0318525!10154-103A1;0.476517!10209-103G2;0.125266!10061-101H7;0.401475!10027-101D9;0.836624!10043-101F7;0.00608879!10783-110G9;0.00817543!10028-101E1;0.194673!10060-101H6;0.335847!10203-103F5;0.931471!10059-101H5;0.407422!10047-101G2;0.775708!10029-101E2;0.0374102!10058-101H4;0.095617!10418-106C4;0.931932!10492-107B6;0.064304!10694-109G1;0.100454!10797-110I5;0.027185!10057-101H3;0.0722658!10100-102D1;0.901627!10055-101H1;0.318303!10204-103F6;0.61528!10191-103E2;0.186155!10563-108A5;0.0309346
|name=CNhs12522_bl_f0
|name=CNhs12522_bl_f0
|tomtom_result=AZF1#MA0277.1;-2;0.000162588;0.0773917;0.154254;9;TGAAAAGGAAAT;AAAAAGAAA;+!HMG-I/Y#MA0045.1;2;0.000404309;0.192451;0.191793;12;TGAAAAGGAAAT;CAACAAATGGAAAAAC;+!STAT1#MA0137.1;0;0.00101941;0.485239;0.322386;12;TGAAAAGGAAAT;GGAAAACGAAACTG;+!ELF5#MA0136.1;-4;0.001643;0.782069;0.359003;8;TGAAAAGGAAAT;AAGGAAGTA;-!id1#MA0120.1;1;0.00190786;0.908143;0.359003;11;TGAAAAGGAAAT;CGAAAAGGAAAA;-!Hltf#MA0109.1;0;0.00227039;1.08071;0.359003;10;TGAAAAGGAAAT;ATATAAGGTT;-!RME1#MA0370.1;0;0.00428652;2.04038;0.580973;10;TGAAAAGGAAAT;TCCAAAGGAA;+!squamosa#MA0082.1;2;0.00490024;2.33252;0.581134;12;TGAAAAGGAAAT;CCAAAAATGGAAAT;+!Klf4#MA0039.1;-2;0.00865779;4.12111;0.893941;10;TGAAAAGGAAAT;TAAAGGAAGG;+!FEV#MA0156.1;-4;0.0107948;5.13831;0.893941;8;TGAAAAGGAAAT;CAGGAAAT;+!ELK1#MA0028.1;-1;0.0112068;5.33441;0.893941;10;TGAAAAGGAAAT;GAGCCGGAAG;+!IRF1#MA0050.1;-1;0.0113068;5.38205;0.893941;11;TGAAAAGGAAAT;GAAAGCGAAACC;+!SPI1#MA0080.2;-5;0.0125432;5.97057;0.915407;7;TGAAAAGGAAAT;AGGAAGT;+!tll#MA0459.1;-2;0.0151451;7.20909;0.99658;10;TGAAAAGGAAAT;AAAAGTCAAA;+!Dof2#MA0020.1;-3;0.0169272;8.05734;0.99658;6;TGAAAAGGAAAT;AAAGCA;+!SPT23#MA0388.1;-2;0.018863;8.97879;0.99658;8;TGAAAAGGAAAT;GAAATCAA;+!ETS1#MA0098.1;-5;0.0203102;9.66766;0.99658;6;TGAAAAGGAAAT;CGGAAA;-
}}
}}

Latest revision as of 13:52, 7 September 2012

Full Name: CNhs12522_bl_f0

Motif matrix
POACGT
1315.830535968145110.963014112926913434.6508041447806442.1225969024304
2161.61133842806558364.3078126194458653.795477010327523.85232307044451
31026.913097423694443.7908710037021556.4141261821244476.44885651876164
4674.921933029738528.520875180135928459.117798781443341.006344136965765
5893.7319248319734112.01603609807587193.228439348225984.590550850008508
61103.579864961898520.0096799488111322.1417907338457157.835615483728255
7176.29738777995538.127286526851965940.487804972772478.65447184870352
847.14807672562713400.1659919417573739.596136845137516.656745615761597
9590.7156313270061235.8261421263526432.3295097328602344.6956679420632
10877.965341158982318.408539089119046144.9279652105995162.26510566958322
11674.991300329519594.53673299789793346.216051014774187.82286678609141
12142.13350704076268445.929636617042451.610781314188955563.8930261562887

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AZF1#MA0277.1-20.0001625880.07739170.1542549TGAAAAGGAAATAAAAAGAAA+
HMG-I/Y#MA0045.120.0004043090.1924510.19179312TGAAAAGGAAATCAACAAATGGAAAAAC+
STAT1#MA0137.100.001019410.4852390.32238612TGAAAAGGAAATGGAAAACGAAACTG+
ELF5#MA0136.1-40.0016430.7820690.3590038TGAAAAGGAAATAAGGAAGTA-
id1#MA0120.110.001907860.9081430.35900311TGAAAAGGAAATCGAAAAGGAAAA-
Hltf#MA0109.100.002270391.080710.35900310TGAAAAGGAAATATATAAGGTT-
RME1#MA0370.100.004286522.040380.58097310TGAAAAGGAAATTCCAAAGGAA+
squamosa#MA0082.120.004900242.332520.58113412TGAAAAGGAAATCCAAAAATGGAAAT+
Klf4#MA0039.1-20.008657794.121110.89394110TGAAAAGGAAATTAAAGGAAGG+
FEV#MA0156.1-40.01079485.138310.8939418TGAAAAGGAAATCAGGAAAT+
ELK1#MA0028.1-10.01120685.334410.89394110TGAAAAGGAAATGAGCCGGAAG+
IRF1#MA0050.1-10.01130685.382050.89394111TGAAAAGGAAATGAAAGCGAAACC+
SPI1#MA0080.2-50.01254325.970570.9154077TGAAAAGGAAATAGGAAGT+
tll#MA0459.1-20.01514517.209090.9965810TGAAAAGGAAATAAAAGTCAAA+
Dof2#MA0020.1-30.01692728.057340.996586TGAAAAGGAAATAAAGCA+
SPT23#MA0388.1-20.0188638.978790.996588TGAAAAGGAAATGAAATCAA+
ETS1#MA0098.1-50.02031029.667660.996586TGAAAAGGAAATCGGAAA-
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