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MacroAPE 1083:Motif TGANCT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;21440!02;0;0;21440;0!03;21440;0;0;0!04;5360;5360;5360;5360!05;0;21440;0;0!06;0;0;0;21440 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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92909!10828-111C9;0.468969!10788-110H5;0.396749!10792-110H9;0.363151!10765-110E9;0.437624!10829-111D1;0.361762!10830-111D2;0.423852!10831-111D3;0.269488!10832-111D4;0.261588!10833-111D5;0.442935!10764-110E8;0.392389!10770-110F5;0.526753!10399-106A3;0.660617!10400-106A4;0.256104!10405-106A9;0.263461!10834-111D6;0.240491!10835-111D7;0.228304!10836-111D8;0.312541!10837-111D9;0.250514!10699-109G6;0.456108!10802-111A1;0.50981!10796-110I4;0.664811!10010-101C1;0.699387!10810-111A9;0.0601485!10421-106C7;0.454394!10708-109H6;0.283922!12235-129G3;0.142967!12236-129G4;0.505469!12237-129G5;0.320272!10167-103B5;0.503302!10151-102I7;0.688511!10428-106D5;0.710274!10795-110I3;0.87228!10805-111A4;0.405338!10052-101G7;0.380706!10189-103D9;0.190489!10589-108D4;0.285859!10425-106D2;0.122088!10427-106D4;0.0130462!10702-109G9;0.248665!10432-106D9;0.681784!10496-107C1;0.367842!10718-109I7;0.755436!10011-101C2;0.290131!10053-101G8;0.141933!10686-109F2;0.690351!10084-102B3;0.240713!10012-101C3;0.767303!10085-102B4;0.756677!10482-107A5;0.687117!10419-106C5;0.713322!10080-102A8;0.947992!10760-110E4;0.176058!10709-109H7;0.155255!10710-109H8;0.292077!10703-109H1;0.240105!10719-109I8;0.043312!10642-109A3;0.346716!10177-103C6;0.169119!10164-103B2;0.651341!10173-103C2;0.950451!10166-103B4;0.752682!10083-102B2;0.736147!10188-103D8;0.823696!10552-107I3;0.766019!10553-107I4;0.209217!10013-101C4;0.168452!10536-107G5;0.22771!10618-108G6;0.92506!10423-106C9;0.213578!10785-110H2;0.370258!12238-129G6;0.334223!12239-129G7;0.824563!12240-129G8;0.931629!10416-106C2;0.374925!10801-110I9;0.267911!10766-110F1;0.982683!10824-111C5;0.551134!10825-111C6;0.607589!10826-111C7;0.615709!10454-106G4;0.622092!10409-106B4;0.603456!10638-108I8;0.565857!10636-108I6;0.276215!10513-107D9;0.689604!10420-106C6;0.207954!10082-102B1;0.0381284!10014-101C5;0.317894!10070-101I7;0.179316!10452-106G2;0.210326!10453-106G3;0.478702!10449-106F8;0.180497!10042-101F6;0.241755!10069-101I6;0.663765!10193-103E4;0.00664383!10631-108I1;0.715616!10438-106E6;0.162004!10488-107B2;0.124909!10196-103E7;0.322141!10071-101I8;0.311412!10071-101I8;0.356322!10041-101F5;0.674429!10451-106G1;0.41355!10450-106F9;0.0146151!10604-108F1;0.00748954!10605-108F2;0.511018!10606-108F3;0.560663!10603-108E9;0.465945!10497-107C2;0.620124!10448-106F7;0.470494!10643-109A4;0.166339!10426-106D3;0.0860789!10431-106D8;0.401472!10197-103E8;0.229403!10443-106F2;0.0416411!10815-111B5;0.390121!10816-111B6;0.452186!10817-111B7;0.344718!10015-101C6;0.400257!10410-106B5;0.1817!10054-101G9;0.160328!10758-110E2;0.253393!10711-109H9;0.366012!10040-101F4;0.08951!10470-106I2;0.911983!10415-106C1;0.178883!10198-103E9;0.56067!10614-108G2;0.204743!10612-108F9;0.229304!10549-107H9;0.24123!10615-108G3;0.0281954!10487-107B1;0.283325!10433-106E1;0.553702!10688-109F4;0.0828712!10444-106F3;0.487895!10444-106F3;0.741877!10485-107A8;0.864289!10413-106B8;0.0811812!10175-103C4;0.67615!10161-103A8;0.691697!12131-128D7;0.551742!10624-108H3;0.413799!10712-109I1;0.538517!10205-103F7;0.565526!10206-103F8;0.0298161!10207-103F9;0.0197374!10050-101G5;0.0184525!10051-101G6;0.000517589!10016-101C7;0.00302805!10046-101G1;0.0117877!10778-110G4;0.075691!10633-108I3;0.375746!10818-111B8;0.354032!10819-111B9;0.753297!10820-111C1;0.786334!10484-107A7;0.759956!10808-111A7;0.994425!10169-103B7;0.120061!10153-102I9;0.711214!13425-144D5;0.688808!13433-144E4;0.192253!13437-144E8;0.206881!11904-125F5;0.258099!11905-125F6;0.861287!10039-101F3;0.614432!10791-110H8;0.948987!10017-101C8;0.32351!10045-101F9;0.107225!10509-107D5;0.739936!10839-111E2;0.130477!10692-109F8;0.759568!10079-102A7;0.24104!10078-102A6;0.0152814!10721-110A1;0.00184766!10569-108B2;0.32661!10570-108B3;0.334539!10571-108B4;0.477278!10647-109A8;0.370532!10752-110D5;0.150986!10782-110G8;0.684311!10726-110A6;0.63706!10018-101C9;0.333142!10086-102B5;0.000169909!10182-103D2;0.0343013!10165-103B3;0.464627!10499-107C4;0.540127!10408-106B3;0.330432!10019-101D1;0.604267!10068-101I5;0.292711!10075-102A3;0.313377!10077-102A5;0.305168!10727-110A7;0.121509!10775-110G1;0.151573!10412-106B7;0.369156!12231-129F8;0.235176!12232-129F9;0.303765!12233-129G1;0.246925!12234-129G2;0.148471!10414-106B9;0.185905!10170-103B8;0.172591!10183-103D3;0.83175!10150-102I6;0.770435!10174-103C3;0.745401!10155-103A2;0.455954!10038-101F2;0.46649!10838-111E1;0.520083!10759-110E3;0.125532!10514-107E1;0.163986!10465-106H6;0.0982008!10691-109F7;0.248215!10843-111E6;0.153774!10844-111E7;0.437755!11747-123G1;0.0352593!11748-123G2;0.177236!11749-123G3;0.465487!11750-123G4;0.0570283!11751-123G5;0.345929!11840-124H4;0.370746!11752-123G6;0.21213!11753-123G7;0.410793!11754-123G8;0.232598!11755-123G9;0.102467!11756-123H1;0.504903!11833-124G6;0.815942!11760-123H5;0.871846!11836-124G9;0.724479!11758-123H3;0.323558!11835-124G8;0.486325!11762-123H7;0.400464!11838-124H2;0.499678!11757-123H2;0.95666!11759-123H4;0.941178!11761-123H6;0.526067!11842-124H6;0.70797!11837-124H1;0.64018!10568-108B1;0.575165!13230-141I8;0.78487!13231-141I9;0.499645!10696-109G3;0.375828!10493-107B7;0.408029!10494-107B8;0.307648!10850-111F4;0.321143!10851-111F5;0.391378!10852-111F6;0.198231!10853-111F7;0.359137!10854-111F8;0.109796!10855-111F9;0.261313!10856-111G1;0.223297!10847-111F1;0.201286!10846-111E9;0.0600157!10848-111F2;0.226189!10845-111E8;0.301849!10857-111G2;0.517462!10858-111G3;0.112132!10156-103A3;0.473153!11901-125F2;0.785038!11902-125F3;0.735006!11903-125F4;0.672361!10689-109F5;0.673621!10648-109A9;0.673897!10784-110H1;0.793561!10744-110C6;0.339407!10772-110F7;0.633911!10474-106I6;0.0849818!10600-108E6;0.699895!10684-109E9;0.827533!12226-129F3;0.904814!12227-129F4;0.184015!10508-107D4;0.82559!10539-107G8;0.0156764!10607-108F4;0.373573!10555-107I6;0.125986!10774-110F9;0.0456302!10637-108I7;0.120942!10663-109C6;0.391123!10728-110A8;0.211397!10729-110A9;0.0799731!10430-106D7;0.650178!10730-110B1;0.196698!10813-111B3;0.833076!10812-111B2;0.542953!10037-101F1;0.410874!10172-103C1;0.932561!10163-103B1;0.829553!10076-102A4;0.783758!10073-102A1;0.901355!10036-101E9;0.626822!10195-103E6;0.911603!10277-104E7;0.888583!10434-106E2;0.480034!10550-107I1;0.104685!10545-107H5;0.213786!10544-107H4;0.438052!10704-109H2;0.258837!10510-107D6;0.972061!10558-107I9;0.040196!10020-101D2;0.00831989!10732-110B3;0.095973!10049-101G4;0.149186!10698-109G5;0.426886!10437-106E5;0.233678!10417-106C3;0.0196518!10035-101E8;0.221269!10171-103B9;0.900453!10157-103A4;0.690649!10034-101E7;0.765109!10072-101I9;0.872214!10199-103F1;0.542124!10200-103F2;0.632458!10697-109G4;0.0549047!10723-110A3;0.728305!10179-103C8;0.212174!10160-103A7;0.232777!10180-103C9;0.247463!10162-103A9;0.792496!10021-101D3;0.690047!10840-111E3;0.667046!10706-109H4;0.609704!10033-101E6;0.170762!10032-101E5;0.639682!10490-107B4;0.888628!10439-106E7;0.351042!10022-101D4;0.191862!10176-103C5;0.227394!10469-106I1;0.977246!10067-101I4;0.159554!10411-106B6;0.854365!10471-106I3;0.878244!10030-101E3;0.581906!10475-106I7;0.443458!10787-110H4;0.109148!10477-106I9;0.658995!10695-109G2;0.510544!11771-123I7;0.00618042!11772-123I8;0.179368!11773-123I9;0.419283!10093-102C3;0.422289!10442-106F1;0.126327!10442-106F1;0.197134!10201-103F3;0.23178!10639-108I9;0.0772606!11843-124H7;0.553851!11841-124H5;0.334516!10693-109F9;0.0747083!10436-106E4;0.545696!10483-107A6;0.384956!10282-104F3;0.713457!10023-101D5;0.000526511!10066-101I3;0.00424782!10065-101I2;0.145803!10800-110I8;0.11207!10610-108F7;0.00305139!10841-111E4;0.0416905!10541-107H1;0.847286!10842-111E5;0.0390787!10562-108A4;0.105132!10024-101D6;0.0618834!10064-101I1;0.158117!10609-108F6;0.316946!10048-101G3;0.322315!10781-110G7;0.188253!10181-103D1;0.246454!10159-103A6;0.419968!10056-101H2;0.347689!10737-110B8;0.551847!10025-101D7;0.773346!10044-101F8;0.0840556!10424-106D1;0.232052!10463-106H4;0.357712!10616-108G4;0.294743!10486-107A9;0.170976!10062-101H8;0.427596!10202-103F4;0.259336!10158-103A5;0.0672279!10441-106E9;0.475282!10031-101E4;0.0269221!10063-101H9;0.873747!10063-101H9;0.538223!11763-123H8;0.167041!11765-123I1;0.722764!11768-123I4;0.635347!10807-111A6;0.846841!10790-110H7;0.0249052!10798-110I6;0.0482659!10786-110H3;0.0102434!10591-108D6;0.0496626!10593-108D8;0.168462!10590-108D5;0.208645!10026-101D8;0.199706!10096-102C6;0.0924236!10168-103B6;0.596805!10154-103A1;0.45164!10209-103G2;0.64719!10061-101H7;0.0447877!10027-101D9;0.127219!10043-101F7;0.886005!10783-110G9;0.775622!10028-101E1;0.0775888!10060-101H6;0.0301475!10203-103F5;0.0177556!10059-101H5;0.0200537!10047-101G2;0.0159158!10029-101E2;0.136887!10058-101H4;0.150827!10418-106C4;0.0626369!10492-107B6;0.16243!10694-109G1;0.184487!10797-110I5;0.14815!10057-101H3;0.429825!10100-102D1;0.034011!10055-101H1;0.16605!10204-103F6;0.53029!10191-103E2;0.230988!10563-108A5;0.0623839
|name=motif_TGANCT
|name=motif_TGANCT
|tomtom_result=NR4A2#MA0160.1;1;0.000814422;0.387665;0.549874;6;TGAACT;GTGACCTT;-!NR2F1#MA0017.1;0;0.00165042;0.785601;0.549874;6;TGAACT;TGACCTTTGAACCT;+!RORA_1#MA0071.1;0;0.00243703;1.16003;0.549874;6;TGAACT;TGACCTTGAT;-!RXR::RAR_DR5#MA0159.1;0;0.00286963;1.36594;0.549874;6;TGAACT;TGACCTCTCCGTGACCT;-!Esrrb#MA0141.1;0;0.00297444;1.41583;0.549874;6;TGAACT;TGACCTTGAGCT;-!HNF4A#MA0114.1;0;0.00364838;1.73663;0.549874;6;TGAACT;TGACCTTTGGCCT;-!RORA_2#MA0072.1;1;0.00494498;2.35381;0.549874;6;TGAACT;TTGACCTACTTATA;-!NR1H2::RXRA#MA0115.1;2;0.00509362;2.42456;0.549874;6;TGAACT;GTTGACCTTTGACCTTT;-!PPARG::RXRA#MA0065.2;3;0.00521071;2.4803;0.549874;6;TGAACT;AGATGACCTTTGACCCCTGA;-!PPARG::RXRA#MA0065.2;0;0.00795126;3.7848;0.75517;6;TGAACT;TGACCTTTGCCCTAC;-!ESR1#MA0112.2;9;0.0097162;4.62491;0.810319;6;TGAACT;AGGTCAGGGTGACCTGGGCC;-!PPARG#MA0066.1;12;0.0102383;4.87344;0.810319;6;TGAACT;AGTAGGTCACCGTGACCTAC;-!ESR2#MA0258.1;11;0.0118864;5.65793;0.868392;6;TGAACT;CAAGGTCACGGTGACCTG;+!ESR1#MA0112.2;10;0.0130135;6.19442;0.882824;6;TGAACT;GGGGTCACGGTGACCTGG;-!YPR013C#MA0434.1;0;0.018994;9.04114;0.997635;6;TGAACT;TGATCTACA;-!TOD6#MA0350.1;9;0.0190341;9.06024;0.997635;6;TGAACT;AAAACGCGATGAGCTGTGCCT;-!RXRA::VDR#MA0074.1;0;0.0209943;9.99327;0.997635;6;TGAACT;TGAACCCGATGACCC;-
}}
}}

Latest revision as of 13:59, 7 September 2012

Full Name: motif_TGANCT

Motif matrix
POACGT
0100021440
0200214400
0321440000
045360536053605360
0502144000
0600021440

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NR4A2#MA0160.110.0008144220.3876650.5498746TGAACTGTGACCTT-
NR2F1#MA0017.100.001650420.7856010.5498746TGAACTTGACCTTTGAACCT+
RORA_1#MA0071.100.002437031.160030.5498746TGAACTTGACCTTGAT-
RXR::RAR_DR5#MA0159.100.002869631.365940.5498746TGAACTTGACCTCTCCGTGACCT-
Esrrb#MA0141.100.002974441.415830.5498746TGAACTTGACCTTGAGCT-
HNF4A#MA0114.100.003648381.736630.5498746TGAACTTGACCTTTGGCCT-
RORA_2#MA0072.110.004944982.353810.5498746TGAACTTTGACCTACTTATA-
NR1H2::RXRA#MA0115.120.005093622.424560.5498746TGAACTGTTGACCTTTGACCTTT-
PPARG::RXRA#MA0065.230.005210712.48030.5498746TGAACTAGATGACCTTTGACCCCTGA-
PPARG::RXRA#MA0065.200.007951263.78480.755176TGAACTTGACCTTTGCCCTAC-
ESR1#MA0112.290.00971624.624910.8103196TGAACTAGGTCAGGGTGACCTGGGCC-
PPARG#MA0066.1120.01023834.873440.8103196TGAACTAGTAGGTCACCGTGACCTAC-
ESR2#MA0258.1110.01188645.657930.8683926TGAACTCAAGGTCACGGTGACCTG+
ESR1#MA0112.2100.01301356.194420.8828246TGAACTGGGGTCACGGTGACCTGG-
YPR013C#MA0434.100.0189949.041140.9976356TGAACTTGATCTACA-
TOD6#MA0350.190.01903419.060240.9976356TGAACTAAAACGCGATGAGCTGTGCCT-
RXRA::VDR#MA0074.100.02099439.993270.9976356TGAACTTGAACCCGATGACCC-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_TGANCT&oldid=2134201"