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MacroAPE 1083:3-CGCCCATT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.863;860.411;0.863;0.863!2;1.726;152.751;706.797;1.726!3;1.726;643.798;1.726;215.75!4;0.863;513.485;0.863;347.789!5;0.863;860.411;0.863;0.8...")
 
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7013!10464-106H5;0.763501!10827-111C8;0.3303!10789-110H6;0.364938!10828-111C9;0.796942!10788-110H5;0.919528!10792-110H9;0.499017!10765-110E9;0.567085!10829-111D1;0.70881!10830-111D2;0.532296!10831-111D3;0.564144!10832-111D4;0.889399!10833-111D5;0.98701!10764-110E8;0.960456!10770-110F5;0.889573!10399-106A3;0.873389!10400-106A4;0.39059!10405-106A9;0.452616!10834-111D6;0.451202!10835-111D7;0.512928!10836-111D8;0.790848!10837-111D9;0.202123!10699-109G6;0.260446!10802-111A1;0.816023!10796-110I4;0.347611!10010-101C1;0.432922!10810-111A9;0.24634!10421-106C7;0.258605!10708-109H6;0.89658!12235-129G3;0.230744!12236-129G4;0.956686!12237-129G5;0.755004!10167-103B5;0.963787!10151-102I7;0.474617!10428-106D5;0.812941!10795-110I3;0.0756208!10805-111A4;0.313147!10052-101G7;0.0277675!10189-103D9;0.64654!10589-108D4;0.308378!10425-106D2;0.471855!10427-106D4;0.189965!10702-109G9;0.79801!10432-106D9;0.00603613!10496-107C1;0.345946!10718-109I7;0.916571!10011-101C2;0.85173!10053-101G8;0.413078!10686-109F2;0.338762!10084-102B3;0.0690867!10012-101C3;0.441879!10085-102B4;0.957433!10482-107A5;0.181035!10419-106C5;0.257225!10080-102A8;0.234278!10760-110E4;0.597442!10709-109H7;0.653407!10710-109H8;0.499338!10703-109H1;0.47728!10719-109I8;0.372608!10642-109A3;0.0871484!10177-103C6;0.203127!10164-103B2;0.622847!10173-103C2;0.816515!10166-103B4;0.991962!10083-102B2;0.830594!10188-103D8;0.540606!10552-107I3;0.810935!10553-107I4;0.755278!10013-101C4;0.391037!10536-107G5;0.498531!10618-108G6;0.408175!10423-106C9;0.124949!10785-110H2;0.217406!12238-129G6;0.160243!12239-129G7;0.535177!12240-129G8;0.388809!10416-106C2;0.204734!10801-110I9;0.996918!10766-110F1;0.841368!10824-111C5;0.818534!10825-111C6;0.640973!10826-111C7;0.614942!10454-106G4;0.691381!10409-106B4;0.837433!10638-108I8;0.740042!10636-108I6;0.198058!10513-107D9;0.397881!10420-106C6;0.250084!10082-102B1;0.289673!10014-101C5;0.626829!10070-101I7;0.293667!10452-106G2;0.426828!10453-106G3;0.575345!10449-106F8;0.673988!10042-101F6;0.694042!10069-101I6;0.671102!10193-103E4;0.570783!10631-108I1;0.629698!10438-106E6;0.89682!10488-107B2;0.334941!10196-103E7;0.642012!10071-101I8;0.499845!10071-101I8;0.721346!10041-101F5;0.232347!10451-106G1;0.588741!10450-106F9;0.46753!10604-108F1;0.30297!10605-108F2;0.372513!10606-108F3;0.196527!10603-108E9;0.352499!10497-107C2;0.526141!10448-106F7;0.246599!10643-109A4;0.130243!10426-106D3;0.250802!10431-106D8;0.377284!10197-103E8;0.35295!10443-106F2;0.489744!10815-111B5;0.392372!10816-111B6;0.920796!10817-111B7;0.967792!10015-101C6;0.999389!10410-106B5;0.444394!10054-101G9;0.0187058!10758-110E2;0.667844!10711-109H9;0.467649!10040-101F4;0.836683!10470-106I2;0.753864!10415-106C1;0.361662!10198-103E9;0.474194!10614-108G2;0.381246!10612-108F9;0.275156!10549-107H9;0.169829!10615-108G3;0.213367!10487-107B1;0.358243!10433-106E1;0.741344!10688-109F4;0.668976!10444-106F3;0.642949!10444-106F3;0.556908!10485-107A8;0.613761!10413-106B8;0.498152!10175-103C4;0.401712!10161-103A8;0.534252!12131-128D7;0.741131!10624-108H3;0.632992!10712-109I1;0.6129!10205-103F7;0.489108!10206-103F8;0.423651!10207-103F9;0.465906!10050-101G5;0.115959!10051-101G6;0.836941!10016-101C7;0.473708!10046-101G1;0.416747!10778-110G4;0.669148!10633-108I3;0.104981!10818-111B8;0.575339!10819-111B9;0.5221!10820-111C1;0.513454!10484-107A7;0.521846!10808-111A7;0.220719!10169-103B7;0.834718!10153-102I9;0.804631!13425-144D5;0.860885!13433-144E4;0.0201811!13437-144E8;0.0122131!11904-125F5;0.0247758!11905-125F6;0.151099!10039-101F3;0.796314!10791-110H8;0.697565!10017-101C8;0.429736!10045-101F9;0.587744!10509-107D5;0.920955!10839-111E2;0.561613!10692-109F8;0.34501!10079-102A7;0.135736!10078-102A6;0.488381!10721-110A1;0.350699!10569-108B2;0.354655!10570-108B3;0.813953!10571-108B4;0.647464!10647-109A8;0.359931!10752-110D5;0.30878!10782-110G8;0.0645955!10726-110A6;0.367969!10018-101C9;0.165019!10086-102B5;0.203152!10182-103D2;0.91484!10165-103B3;0.825012!10499-107C4;0.864826!10408-106B3;0.541535!10019-101D1;0.491152!10068-101I5;0.428646!10075-102A3;0.376916!10077-102A5;0.457481!10727-110A7;0.451194!10775-110G1;0.695289!10412-106B7;0.69066!12231-129F8;0.958709!12232-129F9;0.884944!12233-129G1;0.385012!12234-129G2;0.283072!10414-106B9;0.399658!10170-103B8;0.338503!10183-103D3;0.734898!10150-102I6;0.937188!10174-103C3;0.904703!10155-103A2;0.778122!10038-101F2;0.907512!10838-111E1;0.960923!10759-110E3;0.0527711!10514-107E1;0.0819369!10465-106H6;0.128018!10691-109F7;0.0690693!10843-111E6;0.546129!10844-111E7;0.589695!11747-123G1;0.195002!11748-123G2;0.141699!11749-123G3;0.618386!11750-123G4;0.0294395!11751-123G5;0.208518!11840-124H4;0.222788!11752-123G6;0.123748!11753-123G7;0.130089!11754-123G8;0.179298!11755-123G9;0.259323!11756-123H1;0.0739137!11833-124G6;0.0500353!11760-123H5;0.153602!11836-124G9;0.078904!11758-123H3;0.0375696!11835-124G8;0.0846551!11762-123H7;0.19097!11838-124H2;0.342044!11757-123H2;0.270418!11759-123H4;0.0709999!11761-123H6;0.31501!11842-124H6;0.435124!11837-124H1;0.21967!10568-108B1;0.216896!13230-141I8;0.910539!13231-141I9;0.709074!10696-109G3;0.981094!10493-107B7;0.5718!10494-107B8;0.274729!10850-111F4;0.465537!10851-111F5;0.355223!10852-111F6;0.630361!10853-111F7;0.999909!10854-111F8;0.78391!10855-111F9;0.427154!10856-111G1;0.61894!10847-111F1;0.696084!10846-111E9;0.41709!10848-111F2;0.687166!10845-111E8;0.885328!10857-111G2;0.806166!10858-111G3;0.586677!10156-103A3;0.776772!11901-125F2;0.893427!11902-125F3;0.671301!11903-125F4;0.733636!10689-109F5;0.5679!10648-109A9;0.734763!10784-110H1;0.129855!10744-110C6;0.622574!10772-110F7;0.781858!10474-106I6;0.684276!10600-108E6;0.385523!10684-109E9;0.512112!12226-129F3;0.337862!12227-129F4;0.36548!10508-107D4;0.185929!10539-107G8;0.510227!10607-108F4;0.201863!10555-107I6;0.0340452!10774-110F9;0.340862!10637-108I7;0.0377922!10663-109C6;0.157304!10728-110A8;0.00876541!10729-110A9;0.056005!10430-106D7;0.54812!10730-110B1;0.34975!10813-111B3;0.83043!10812-111B2;0.519921!10037-101F1;0.317874!10172-103C1;0.701692!10163-103B1;0.853866!10076-102A4;0.841444!10073-102A1;0.644628!10036-101E9;0.296726!10195-103E6;0.651769!10277-104E7;0.796459!10434-106E2;0.258314!10550-107I1;0.334346!10545-107H5;0.339446!10544-107H4;0.853298!10704-109H2;0.609644!10510-107D6;0.899448!10558-107I9;0.219268!10020-101D2;0.240738!10732-110B3;0.991701!10049-101G4;0.680526!10698-109G5;0.540209!10437-106E5;0.242522!10417-106C3;0.360201!10035-101E8;0.518868!10171-103B9;0.726529!10157-103A4;0.727175!10034-101E7;0.92016!10072-101I9;0.732788!10199-103F1;0.334431!10200-103F2;0.805327!10697-109G4;0.427034!10723-110A3;0.139018!10179-103C8;0.435696!10160-103A7;0.966587!10180-103C9;0.763593!10162-103A9;0.816104!10021-101D3;0.412191!10840-111E3;0.483856!10706-109H4;0.590563!10033-101E6;0.884457!10032-101E5;0.969025!10490-107B4;0.676066!10439-106E7;0.344337!10022-101D4;0.153417!10176-103C5;0.584965!10469-106I1;0.619189!10067-101I4;0.510848!10411-106B6;0.870672!10471-106I3;0.621877!10030-101E3;0.658808!10475-106I7;0.96423!10787-110H4;0.171514!10477-106I9;0.233918!10695-109G2;0.3554!11771-123I7;0.357159!11772-123I8;0.474712!11773-123I9;0.408568!10093-102C3;0.786549!10442-106F1;0.781082!10442-106F1;0.851487!10201-103F3;0.89236!10639-108I9;0.491856!11843-124H7;0.338659!11841-124H5;0.357698!10693-109F9;0.79959!10436-106E4;0.162822!10483-107A6;0.393989!10282-104F3;0.888819!10023-101D5;0.327873!10066-101I3;0.283462!10065-101I2;0.826273!10800-110I8;0.608989!10610-108F7;0.12149!10841-111E4;0.0690202!10541-107H1;0.0385729!10842-111E5;0.959337!10562-108A4;0.118028!10024-101D6;0.368615!10064-101I1;0.220552!10609-108F6;0.739278!10048-101G3;0.476856!10781-110G7;0.532397!10181-103D1;0.552986!10159-103A6;0.788794!10056-101H2;0.925458!10737-110B8;0.53423!10025-101D7;0.0203655!10044-101F8;0.340274!10424-106D1;0.627211!10463-106H4;0.982574!10616-108G4;0.572027!10486-107A9;0.337058!10062-101H8;0.632021!10202-103F4;0.790756!10158-103A5;0.929735!10441-106E9;0.624049!10031-101E4;0.0484708!10063-101H9;0.624266!10063-101H9;0.20897!11763-123H8;0.578164!11765-123I1;0.247421!11768-123I4;0.323784!10807-111A6;0.180717!10790-110H7;0.0772167!10798-110I6;0.0425631!10786-110H3;0.0166765!10591-108D6;0.14192!10593-108D8;0.0465809!10590-108D5;0.183992!10026-101D8;0.0485081!10096-102C6;0.31226!10168-103B6;0.00132563!10154-103A1;0.454434!10209-103G2;0.848852!10061-101H7;0.485728!10027-101D9;0.726977!10043-101F7;0.59921!10783-110G9;0.503868!10028-101E1;0.38133!10060-101H6;0.256388!10203-103F5;0.751395!10059-101H5;0.353624!10047-101G2;0.473264!10029-101E2;0.315621!10058-101H4;0.293809!10418-106C4;0.494601!10492-107B6;0.171189!10694-109G1;0.194065!10797-110I5;0.558095!10057-101H3;0.394857!10100-102D1;0.59172!10055-101H1;0.490088!10204-103F6;0.746423!10191-103E2;0.186745!10563-108A5;0.397326
|name=3-CGCCCATT,CNhs12824,BestGuess:EGR3_f1_HM09(0.703087484203052),T:863.0(52.98%),B:18409.0(38.92%),P:1e-29
|name=3-CGCCCATT,CNhs12824,BestGuess:EGR3_f1_HM09(0.703087484203052),T:863.0(52.98%),B:18409.0(38.92%),P:1e-29
|tomtom_result=btd#MA0443.1;2;5.88036e-05;0.0279905;0.055981;8;CGCCCATT;TCCGCCCCCT;-!hkb#MA0450.1;3;0.00309053;1.47109;1;6;CGCCCATT;TCACGCCCC;-!DAL82#MA0291.1;1;0.00502402;2.39144;1;8;CGCCCATT;GCGCACATT;-!STP2#MA0395.1;11;0.0101998;4.85512;1;8;CGCCCATT;TCGTCGTGCGGCGCCGATCA;-!Klf4#MA0039.2;4;0.0103451;4.92428;1;6;CGCCCATT;GCCCCACCCA;-!NFYA#MA0060.1;1;0.0116572;5.54881;1;8;CGCCCATT;GCGCTGATTGGCTGAG;-!SP1#MA0079.2;3;0.0122309;5.82192;1;7;CGCCCATT;CCCCGCCCCC;+!abi4#MA0123.1;3;0.0122309;5.82192;1;7;CGCCCATT;CGGTGCCCCC;+!INSM1#MA0155.1;0;0.0142492;6.78261;1;8;CGCCCATT;CGCCCCCTGACA;-!DOT6#MA0351.1;13;0.0148504;7.06881;1;8;CGCCCATT;TTCTGCACCTCATCGCATCCT;+!SP1#MA0079.2;4;0.0169436;8.06514;1;6;CGCCCATT;ACCCCGCCCC;-!RAP1#MA0359.1;0;0.0188097;8.9534;1;8;CGCCCATT;CACCCATACA;+
}}
}}

Latest revision as of 14:03, 7 September 2012

Full Name: 3-CGCCCATT,CNhs12824,BestGuess:EGR3_f1_HM09(0.703087484203052),T:863.0(52.98%),B:18409.0(38.92%),P:1e-29

Motif matrix
POACGT
10.863860.4110.8630.863
21.726152.751706.7971.726
31.726643.7981.726215.75
40.863513.4850.863347.789
50.863860.4110.8630.863
6424.596270.9820.863166.559
70.863235.5990.863625.675
8251.99668.1770.863541.964

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
btd#MA0443.125.88036e-050.02799050.0559818CGCCCATTTCCGCCCCCT-
hkb#MA0450.130.003090531.4710916CGCCCATTTCACGCCCC-
DAL82#MA0291.110.005024022.3914418CGCCCATTGCGCACATT-
STP2#MA0395.1110.01019984.8551218CGCCCATTTCGTCGTGCGGCGCCGATCA-
Klf4#MA0039.240.01034514.9242816CGCCCATTGCCCCACCCA-
NFYA#MA0060.110.01165725.5488118CGCCCATTGCGCTGATTGGCTGAG-
SP1#MA0079.230.01223095.8219217CGCCCATTCCCCGCCCCC+
abi4#MA0123.130.01223095.8219217CGCCCATTCGGTGCCCCC+
INSM1#MA0155.100.01424926.7826118CGCCCATTCGCCCCCTGACA-
DOT6#MA0351.1130.01485047.0688118CGCCCATTTTCTGCACCTCATCGCATCCT+
SP1#MA0079.240.01694368.0651416CGCCCATTACCCCGCCCC-
RAP1#MA0359.100.01880978.953418CGCCCATTCACCCATACA+
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