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MacroAPE 1083:CTCCTGTTCC,motif443: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;108.048;1816.557;99.044;227.351!2;101.295;117.052;87.789;1944.864!3;137.311;1827.812;247.61;38.267!4;67.53;1922.354;114.801;146.315!5;155.31...")
 
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0H5;0.500297!10792-110H9;0.863984!10765-110E9;0.453456!10829-111D1;0.772624!10830-111D2;0.60241!10831-111D3;0.982233!10832-111D4;0.662223!10833-111D5;0.520555!10764-110E8;0.603347!10770-110F5;0.557484!10399-106A3;0.957281!10400-106A4;0.517936!10405-106A9;0.615929!10834-111D6;0.603191!10835-111D7;0.674704!10836-111D8;0.443656!10837-111D9;0.210122!10699-109G6;0.530171!10802-111A1;0.962149!10796-110I4;0.572782!10010-101C1;0.403169!10810-111A9;0.297055!10421-106C7;0.45916!10708-109H6;0.993207!12235-129G3;0.0554653!12236-129G4;0.0943382!12237-129G5;0.0949135!10167-103B5;0.0123049!10151-102I7;0.880638!10428-106D5;0.837172!10795-110I3;0.444428!10805-111A4;0.403683!10052-101G7;0.166172!10189-103D9;0.664516!10589-108D4;0.480219!10425-106D2;0.354473!10427-106D4;0.336062!10702-109G9;0.84136!10432-106D9;0.46459!10496-107C1;0.343442!10718-109I7;0.781124!10011-101C2;0.854824!10053-101G8;0.576104!10686-109F2;0.766065!10084-102B3;0.712981!10012-101C3;0.759985!10085-102B4;0.725473!10482-107A5;0.94519!10419-106C5;0.623522!10080-102A8;0.723606!10760-110E4;0.537442!10709-109H7;0.890624!10710-109H8;0.498245!10703-109H1;0.967324!10719-109I8;0.238185!10642-109A3;0.181561!10177-103C6;0.158067!10164-103B2;0.798325!10173-103C2;0.863876!10166-103B4;0.99902!10083-102B2;0.999449!10188-103D8;0.830431!10552-107I3;0.7216!10553-107I4;0.791151!10013-101C4;0.644157!10536-107G5;0.437643!10618-108G6;0.0176897!10423-106C9;0.514482!10785-110H2;0.450404!12238-129G6;0.695412!12239-129G7;0.189805!12240-129G8;0.754462!10416-106C2;0.203!10801-110I9;0.666684!10766-110F1;0.814517!10824-111C5;0.81509!10825-111C6;0.312468!10826-111C7;0.327002!10454-106G4;0.359728!10409-106B4;0.337761!10638-108I8;0.568599!10636-108I6;0.308527!10513-107D9;0.495592!10420-106C6;0.509491!10082-102B1;0.297294!10014-101C5;0.547641!10070-101I7;0.654758!10452-106G2;0.634987!10453-106G3;0.291092!10449-106F8;0.326867!10042-101F6;0.295608!10069-101I6;0.613398!10193-103E4;0.182635!10631-108I1;0.776075!10438-106E6;0.510483!10488-107B2;0.478376!10196-103E7;0.397668!10071-101I8;0.487879!10071-101I8;0.331236!10041-101F5;0.937208!10451-106G1;0.472167!10450-106F9;0.270629!10604-108F1;0.206291!10605-108F2;0.101409!10606-108F3;0.0950382!10603-108E9;0.140613!10497-107C2;0.115798!10448-106F7;0.441497!10643-109A4;0.128486!10426-106D3;0.774897!10431-106D8;0.575178!10197-103E8;0.600727!10443-106F2;0.227987!10815-111B5;0.300619!10816-111B6;0.448984!10817-111B7;0.454503!10015-101C6;0.411805!10410-106B5;0.442423!10054-101G9;0.753149!10758-110E2;0.61582!10711-109H9;0.333291!10040-101F4;0.202224!10470-106I2;0.758128!10415-106C1;0.643021!10198-103E9;0.825116!10614-108G2;0.355424!10612-108F9;0.913194!10549-107H9;0.717495!10615-108G3;0.406757!10487-107B1;0.385543!10433-106E1;0.273146!10688-109F4;0.632623!10444-106F3;0.750133!10444-106F3;0.0513815!10485-107A8;0.124953!10413-106B8;0.0314126!10175-103C4;0.416932!10161-103A8;0.781349!12131-128D7;0.882703!10624-108H3;0.947799!10712-109I1;0.983055!10205-103F7;0.840657!10206-103F8;0.304171!10207-103F9;0.37382!10050-101G5;0.581403!10051-101G6;0.190744!10016-101C7;0.264788!10046-101G1;0.270267!10778-110G4;0.385385!10633-108I3;0.421284!10818-111B8;0.319057!10819-111B9;0.337334!10820-111C1;0.339773!10484-107A7;0.337038!10808-111A7;0.24242!10169-103B7;0.991761!10153-102I9;0.835314!13425-144D5;0.821848!13433-144E4;0.499724!13437-144E8;0.680747!11904-125F5;0.668386!11905-125F6;0.460467!10039-101F3;0.276462!10791-110H8;0.729662!10017-101C8;0.998647!10045-101F9;0.518129!10509-107D5;0.839417!10839-111E2;0.75119!10692-109F8;0.799614!10079-102A7;0.510085!10078-102A6;0.312515!10721-110A1;0.23177!10569-108B2;0.582085!10570-108B3;0.265414!10571-108B4;0.536575!10647-109A8;0.458405!10752-110D5;0.293655!10782-110G8;0.584047!10726-110A6;0.603133!10018-101C9;0.0403512!10086-102B5;0.326252!10182-103D2;0.831779!10165-103B3;0.9767!10499-107C4;0.893789!10408-106B3;0.444834!10019-101D1;0.678807!10068-101I5;0.436026!10075-102A3;0.508267!10077-102A5;0.473556!10727-110A7;0.463208!10775-110G1;0.715767!10412-106B7;0.520419!12231-129F8;0.731451!12232-129F9;0.460082!12233-129G1;0.293299!12234-129G2;0.436087!10414-106B9;0.310252!10170-103B8;0.896681!10183-103D3;0.898698!10150-102I6;0.920207!10174-103C3;0.83362!10155-103A2;0.965752!10038-101F2;0.885585!10838-111E1;0.734917!10759-110E3;0.377389!10514-107E1;0.110069!10465-106H6;0.222998!10691-109F7;0.488075!10843-111E6;0.290524!10844-111E7;0.340286!11747-123G1;0.344415!11748-123G2;0.852609!11749-123G3;0.22702!11750-123G4;0.652706!11751-123G5;0.662929!11840-124H4;0.806239!11752-123G6;0.403768!11753-123G7;0.0959202!11754-123G8;0.246756!11755-123G9;0.605543!11756-123H1;0.896567!11833-124G6;0.702342!11760-123H5;0.325785!11836-124G9;0.959244!11758-123H3;0.389657!11835-124G8;0.488707!11762-123H7;0.632291!11838-124H2;0.272576!11757-123H2;0.537403!11759-123H4;0.761912!11761-123H6;0.536534!11842-124H6;0.355355!11837-124H1;0.238822!10568-108B1;0.625675!13230-141I8;0.528743!13231-141I9;0.531079!10696-109G3;0.627593!10493-107B7;0.837518!10494-107B8;0.163561!10850-111F4;0.196847!10851-111F5;0.0402619!10852-111F6;0.0117735!10853-111F7;0.164732!10854-111F8;0.156997!10855-111F9;0.188463!10856-111G1;0.860315!10847-111F1;0.0681898!10846-111E9;0.0197738!10848-111F2;0.385453!10845-111E8;0.122734!10857-111G2;0.188711!10858-111G3;0.140875!10156-103A3;0.0925699!11901-125F2;0.834304!11902-125F3;0.562894!11903-125F4;0.504328!10689-109F5;0.29465!10648-109A9;0.0998562!10784-110H1;0.205193!10744-110C6;0.416697!10772-110F7;0.666435!10474-106I6;0.50555!10600-108E6;0.866663!10684-109E9;0.288628!12226-129F3;0.331348!12227-129F4;0.715513!10508-107D4;0.0864755!10539-107G8;0.14741!10607-108F4;0.13942!10555-107I6;0.151446!10774-110F9;0.168748!10637-108I7;0.133864!10663-109C6;0.224191!10728-110A8;0.0612845!10729-110A9;0.292421!10430-106D7;0.637824!10730-110B1;0.513451!10813-111B3;0.221444!10812-111B2;0.456677!10037-101F1;0.833976!10172-103C1;0.687163!10163-103B1;0.978049!10076-102A4;0.787739!10073-102A1;0.765614!10036-101E9;0.71388!10195-103E6;0.699831!10277-104E7;0.832376!10434-106E2;0.48975!10550-107I1;0.872305!10545-107H5;0.820493!10544-107H4;0.685468!10704-109H2;0.947578!10510-107D6;0.860428!10558-107I9;0.414096!10020-101D2;0.939762!10732-110B3;0.403601!10049-101G4;0.446554!10698-109G5;0.00254019!10437-106E5;0.407633!10417-106C3;0.0354201!10035-101E8;0.312703!10171-103B9;0.714795!10157-103A4;0.851391!10034-101E7;0.837593!10072-101I9;0.683251!10199-103F1;0.698255!10200-103F2;0.324641!10697-109G4;0.314536!10723-110A3;0.52457!10179-103C8;0.931034!10160-103A7;0.977145!10180-103C9;0.764382!10162-103A9;0.687368!10021-101D3;0.724083!10840-111E3;0.553945!10706-109H4;0.605388!10033-101E6;0.260955!10032-101E5;0.716083!10490-107B4;0.716308!10439-106E7;0.275428!10022-101D4;0.326947!10176-103C5;0.619997!10469-106I1;0.922912!10067-101I4;0.79321!10411-106B6;0.86051!10471-106I3;0.654989!10030-101E3;0.41346!10475-106I7;0.869697!10787-110H4;0.244866!10477-106I9;0.269172!10695-109G2;0.395015!11771-123I7;0.586371!11772-123I8;0.690358!11773-123I9;0.261329!10093-102C3;0.0575614!10442-106F1;0.193154!10442-106F1;0.171929!10201-103F3;0.192174!10639-108I9;0.446822!11843-124H7;0.67292!11841-124H5;0.497935!10693-109F9;0.324087!10436-106E4;0.971304!10483-107A6;0.356153!10282-104F3;0.799301!10023-101D5;0.00947755!10066-101I3;0.107604!10065-101I2;0.269044!10800-110I8;0.175307!10610-108F7;0.447342!10841-111E4;0.539175!10541-107H1;0.344692!10842-111E5;0.596115!10562-108A4;0.273999!10024-101D6;0.210916!10064-101I1;0.622314!10609-108F6;0.94044!10048-101G3;0.592712!10781-110G7;0.569764!10181-103D1;0.449414!10159-103A6;0.993605!10056-101H2;0.922592!10737-110B8;0.842155!10025-101D7;0.682399!10044-101F8;0.675926!10424-106D1;0.8481!10463-106H4;0.688439!10616-108G4;0.973434!10486-107A9;0.760124!10062-101H8;0.617169!10202-103F4;0.400925!10158-103A5;0.18375!10441-106E9;0.762534!10031-101E4;0.384323!10063-101H9;0.723538!10063-101H9;0.832551!11763-123H8;0.394206!11765-123I1;0.857102!11768-123I4;0.600547!10807-111A6;0.757472!10790-110H7;0.487383!10798-110I6;0.358971!10786-110H3;0.249221!10591-108D6;0.392465!10593-108D8;0.273868!10590-108D5;0.700651!10026-101D8;0.539667!10096-102C6;0.473688!10168-103B6;0.903327!10154-103A1;0.91064!10209-103G2;0.812999!10061-101H7;0.202831!10027-101D9;0.486545!10043-101F7;0.798488!10783-110G9;0.525029!10028-101E1;0.02918!10060-101H6;0.566687!10203-103F5;0.353311!10059-101H5;0.163818!10047-101G2;0.267191!10029-101E2;0.193554!10058-101H4;0.358311!10418-106C4;0.452204!10492-107B6;0.159191!10694-109G1;0.351684!10797-110I5;0.926704!10057-101H3;0.493134!10100-102D1;0.133608!10055-101H1;0.381242!10204-103F6;0.790061!10191-103E2;0.551787!10563-108A5;0.236908
|name=CTCCTGTTCC,motif443,CNhs11774,T:2251.0(46.04%),B:27483.7(37.60%),P:1e-32
|name=CTCCTGTTCC,motif443,CNhs11774,T:2251.0(46.04%),B:27483.7(37.60%),P:1e-32
|tomtom_result=Myf#MA0055.1;0;0.00936587;4.45815;1;10;CTCCTGTTCC;CAGCAGCTGCTG;-!Ar#MA0007.1;8;0.0119862;5.70542;1;10;CTCCTGTTCC;ATAAGAACACCCTGTACCCGCC;+!sna#MA0086.1;0;0.0129918;6.18409;1;6;CTCCTGTTCC;CACCTG;-!lin-14#MA0261.1;-3;0.0136453;6.49514;1;6;CTCCTGTTCC;GTGTTC;-!HSF1#MA0319.1;-4;0.014407;6.85775;1;6;CTCCTGTTCC;TGTTCCAT;-!STAT1#MA0137.1;4;0.0148001;7.04485;1;10;CTCCTGTTCC;CAGTTTCATTTTCC;-!GAL4#MA0299.1;2;0.0167955;7.99465;1;10;CTCCTGTTCC;GAGTACTGTTCCCCG;-!odd#MA0454.1;3;0.0168068;8.00004;1;8;CTCCTGTTCC;CTGCTACTGTT;-!ZEB1#MA0103.1;0;0.0197489;9.4005;1;6;CTCCTGTTCC;CACCTG;+!ASH1#MA0276.1;-2;0.0198715;9.45885;1;8;CTCCTGTTCC;CCCGATCCGG;-!LEU3#MA0324.1;-2;0.0198715;9.45885;1;8;CTCCTGTTCC;CCGTTACCGG;+
}}
}}

Latest revision as of 14:18, 7 September 2012

Full Name: CTCCTGTTCC,motif443,CNhs11774,T:2251.0(46.04%),B:27483.7(37.60%),P:1e-32

Motif matrix
POACGT
1108.0481816.55799.044227.351
2101.295117.05287.7891944.864
3137.3111827.812247.6138.267
467.531922.354114.801146.315
5155.319189.08463.0281843.569
6162.072184.5821562.194342.152
7101.295243.108279.1241627.473
8112.55177.829175.5781785.043
9150.8171789.54594.542216.096
10103.5461897.59372.032177.829

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Myf#MA0055.100.009365874.45815110CTCCTGTTCCCAGCAGCTGCTG-
Ar#MA0007.180.01198625.70542110CTCCTGTTCCATAAGAACACCCTGTACCCGCC+
sna#MA0086.100.01299186.1840916CTCCTGTTCCCACCTG-
lin-14#MA0261.1-30.01364536.4951416CTCCTGTTCCGTGTTC-
HSF1#MA0319.1-40.0144076.8577516CTCCTGTTCCTGTTCCAT-
STAT1#MA0137.140.01480017.04485110CTCCTGTTCCCAGTTTCATTTTCC-
GAL4#MA0299.120.01679557.99465110CTCCTGTTCCGAGTACTGTTCCCCG-
odd#MA0454.130.01680688.0000418CTCCTGTTCCCTGCTACTGTT-
ZEB1#MA0103.100.01974899.400516CTCCTGTTCCCACCTG+
ASH1#MA0276.1-20.01987159.4588518CTCCTGTTCCCCCGATCCGG-
LEU3#MA0324.1-20.01987159.4588518CTCCTGTTCCCCGTTACCGG+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:CTCCTGTTCC,motif443&oldid=2134311"