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MacroAPE 1083:10-GTGATGTCACT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;125.172;156.465;1230.309;135.054!2;176.229;123.525;153.171;1194.075!3;153.171;182.817;1182.546;128.466!4;1136.43;176.229;154.818;179.523!5;1...")
 
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-128I8;0.138257!12182-129A4;0.112933!12183-129A5;0.146577!12184-129A6;0.133352!10809-111A8;0.193609!10597-108E3;0.00405233!10717-109I6;0.948485!10455-106G5;0.0337087!10534-107G3;0.110512!10429-106D6;0.107674!10464-106H5;0.662116!10827-111C8;0.0267057!10789-110H6;0.011507!10828-111C9;0.0399!10788-110H5;0.00630681!10792-110H9;0.0308338!10765-110E9;0.0512444!10829-111D1;0.00808265!10830-111D2;0.0601915!10831-111D3;0.015542!10832-111D4;0.00217491!10833-111D5;0.10979!10764-110E8;0.0275182!10770-110F5;0.130254!10399-106A3;0.0394378!10400-106A4;0.0830835!10405-106A9;0.0546731!10834-111D6;0.0927212!10835-111D7;0.0114425!10836-111D8;0.0179703!10837-111D9;0.027944!10699-109G6;0.000692525!10802-111A1;0.00314998!10796-110I4;0.0098714!10010-101C1;0.000285769!10810-111A9;0.304455!10421-106C7;0.00887099!10708-109H6;0.868354!12235-129G3;0.0124025!12236-129G4;0.360149!12237-129G5;0.752331!10167-103B5;0.736938!10151-102I7;0.00370274!10428-106D5;0.00378944!10795-110I3;0.828686!10805-111A4;0.0336607!10052-101G7;0.0456385!10189-103D9;0.319587!10589-108D4;0.0917905!10425-106D2;0.115883!10427-106D4;0.584526!10702-109G9;0.481864!10432-106D9;0.823027!10496-107C1;0.0869021!10718-109I7;0.31056!10011-101C2;0.0935887!10053-101G8;0.236736!10686-109F2;0.0339755!10084-102B3;0.038588!10012-101C3;0.0064321!10085-102B4;0.00120332!10482-107A5;0.0548699!10419-106C5;0.576668!10080-102A8;0.188314!10760-110E4;0.743042!10709-109H7;0.00167382!10710-109H8;0.00147575!10703-109H1;0.0140079!10719-109I8;0.247628!10642-109A3;0.168531!10177-103C6;0.226284!10164-103B2;0.0036901!10173-103C2;0.0297677!10166-103B4;0.0199334!10083-102B2;0.064822!10188-103D8;0.0341213!10552-107I3;0.00333292!10553-107I4;0.0138132!10013-101C4;0.2772!10536-107G5;0.867116!10618-108G6;0.0261143!10423-106C9;0.053496!10785-110H2;0.0420272!12238-129G6;0.0943612!12239-129G7;0.0327759!12240-129G8;0.886819!10416-106C2;0.0311644!10801-110I9;0.0408725!10766-110F1;0.0124958!10824-111C5;0.0312804!10825-111C6;0.0508292!10826-111C7;0.0680441!10454-106G4;0.114164!10409-106B4;0.0353614!10638-108I8;0.0566318!10636-108I6;0.209388!10513-107D9;0.0785479!10420-106C6;0.033718!10082-102B1;0.0937431!10014-101C5;0.605893!10070-101I7;0.975532!10452-106G2;0.78352!10453-106G3;0.469013!10449-106F8;0.294457!10042-101F6;0.137352!10069-101I6;7.62327e-05!10193-103E4;0.708272!10631-108I1;0.00233!10438-106E6;0.0439631!10488-107B2;0.168887!10196-103E7;0.348383!10071-101I8;0.695428!10071-101I8;0.700182!10041-101F5;0.146492!10451-106G1;0.15402!10450-106F9;0.306609!10604-108F1;0.113491!10605-108F2;0.178114!10606-108F3;0.199036!10603-108E9;0.214043!10497-107C2;0.163767!10448-106F7;0.13804!10643-109A4;0.25889!10426-106D3;0.0466111!10431-106D8;0.00382053!10197-103E8;0.0423529!10443-106F2;0.477913!10815-111B5;0.0683333!10816-111B6;0.007693!10817-111B7;0.0258035!10015-101C6;0.00868739!10410-106B5;0.805497!10054-101G9;0.828249!10758-110E2;0.537371!10711-109H9;0.363315!10040-101F4;0.099826!10470-106I2;0.000708263!10415-106C1;0.0979895!10198-103E9;0.5661!10614-108G2;0.398212!10612-108F9;0.081271!10549-107H9;0.00476061!10615-108G3;0.231887!10487-107B1;0.993702!10433-106E1;0.165412!10688-109F4;0.176442!10444-106F3;0.0654968!10444-106F3;0.361122!10485-107A8;0.352646!10413-106B8;0.214019!10175-103C4;0.64656!10161-103A8;0.000478598!12131-128D7;0.00018241!10624-108H3;0.503445!10712-109I1;0.769429!10205-103F7;0.315453!10206-103F8;0.0398732!10207-103F9;0.301865!10050-101G5;0.0270183!10051-101G6;0.579288!10016-101C7;0.183789!10046-101G1;0.0957886!10778-110G4;0.296555!10633-108I3;0.450628!10818-111B8;0.176223!10819-111B9;0.0124368!10820-111C1;0.0101168!10484-107A7;0.0127233!10808-111A7;0.714992!10169-103B7;0.127394!10153-102I9;0.00473674!13425-144D5;0.00522717!13433-144E4;0.0236865!13437-144E8;0.0154291!11904-125F5;0.0203591!11905-125F6;0.0455853!10039-101F3;0.00319377!10791-110H8;0.000426987!10017-101C8;0.0192208!10045-101F9;0.736661!10509-107D5;0.747501!10839-111E2;0.0598452!10692-109F8;0.54162!10079-102A7;0.00234364!10078-102A6;0.409684!10721-110A1;0.345896!10569-108B2;0.162604!10570-108B3;0.838587!10571-108B4;0.872053!10647-109A8;0.988954!10752-110D5;0.104137!10782-110G8;0.219812!10726-110A6;0.381076!10018-101C9;0.0235994!10086-102B5;0.0898412!10182-103D2;0.584528!10165-103B3;0.000780972!10499-107C4;0.000896435!10408-106B3;0.0789556!10019-101D1;0.00109442!10068-101I5;0.150031!10075-102A3;0.241284!10077-102A5;0.360771!10727-110A7;0.190693!10775-110G1;0.937506!10412-106B7;0.0212501!12231-129F8;0.350085!12232-129F9;0.0744379!12233-129G1;0.027258!12234-129G2;0.0725453!10414-106B9;0.135885!10170-103B8;0.203961!10183-103D3;0.00695959!10150-102I6;0.00376397!10174-103C3;0.00196552!10155-103A2;0.0118236!10038-101F2;0.0100926!10838-111E1;0.000310923!10759-110E3;0.519713!10514-107E1;0.0361944!10465-106H6;0.179276!10691-109F7;0.317248!10843-111E6;0.31164!10844-111E7;0.545974!11747-123G1;0.705875!11748-123G2;0.172925!11749-123G3;0.562312!11750-123G4;0.434576!11751-123G5;0.681114!11840-124H4;0.994539!11752-123G6;0.835208!11753-123G7;0.130578!11754-123G8;0.383469!11755-123G9;0.741284!11756-123H1;0.454606!11833-124G6;0.450817!11760-123H5;0.0639485!11836-124G9;0.938002!11758-123H3;0.590706!11835-124G8;0.704551!11762-123H7;0.513133!11838-124H2;0.790908!11757-123H2;0.629926!11759-123H4;0.866156!11761-123H6;0.517856!11842-124H6;0.611745!11837-124H1;0.137722!10568-108B1;0.550944!13230-141I8;0.0127371!13231-141I9;0.497385!10696-109G3;0.537667!10493-107B7;0.503291!10494-107B8;0.32405!10850-111F4;0.0356046!10851-111F5;0.568549!10852-111F6;0.00315512!10853-111F7;0.0755253!10854-111F8;0.0803619!10855-111F9;0.00196307!10856-111G1;0.0476804!10847-111F1;0.000157992!10846-111E9;0.0761904!10848-111F2;0.00204977!10845-111E8;0.00372896!10857-111G2;0.10215!10858-111G3;0.00524099!10156-103A3;0.152506!11901-125F2;0.00196897!11902-125F3;0.651228!11903-125F4;0.620085!10689-109F5;0.886599!10648-109A9;0.755896!10784-110H1;0.0316797!10744-110C6;0.110602!10772-110F7;0.705558!10474-106I6;0.0063389!10600-108E6;0.466208!10684-109E9;0.261609!12226-129F3;0.469937!12227-129F4;0.0439974!10508-107D4;0.116501!10539-107G8;0.760324!10607-108F4;0.658857!10555-107I6;0.106172!10774-110F9;0.939904!10637-108I7;0.00847841!10663-109C6;0.0884609!10728-110A8;0.188117!10729-110A9;0.270146!10430-106D7;0.770387!10730-110B1;0.300322!10813-111B3;0.528923!10812-111B2;0.433597!10037-101F1;0.376095!10172-103C1;0.000800897!10163-103B1;0.0213305!10076-102A4;0.00165377!10073-102A1;0.00328156!10036-101E9;0.265473!10195-103E6;0.000879712!10277-104E7;0.00281773!10434-106E2;0.00024929!10550-107I1;0.00659251!10545-107H5;0.112561!10544-107H4;0.0389481!10704-109H2;0.0227069!10510-107D6;0.851764!10558-107I9;0.260092!10020-101D2;0.0753343!10732-110B3;0.50518!10049-101G4;0.0397981!10698-109G5;0.431932!10437-106E5;0.0572695!10417-106C3;0.291083!10035-101E8;0.670597!10171-103B9;0.000356053!10157-103A4;0.00126572!10034-101E7;0.00352505!10072-101I9;0.000132641!10199-103F1;0.391755!10200-103F2;0.87098!10697-109G4;0.666237!10723-110A3;0.326184!10179-103C8;0.0151053!10160-103A7;0.0284458!10180-103C9;0.133748!10162-103A9;0.155009!10021-101D3;0.386728!10840-111E3;0.257363!10706-109H4;0.66667!10033-101E6;0.357954!10032-101E5;0.000188583!10490-107B4;0.00027741!10439-106E7;0.00318537!10022-101D4;0.0018479!10176-103C5;0.680374!10469-106I1;0.00894702!10067-101I4;0.311471!10411-106B6;0.916245!10471-106I3;0.00332913!10030-101E3;0.386469!10475-106I7;0.125091!10787-110H4;0.157196!10477-106I9;0.28106!10695-109G2;0.10179!11771-123I7;0.841501!11772-123I8;0.04214!11773-123I9;0.0788785!10093-102C3;0.500435!10442-106F1;0.953927!10442-106F1;0.748516!10201-103F3;0.680185!10639-108I9;0.762714!11843-124H7;0.740365!11841-124H5;0.183146!10693-109F9;0.0024886!10436-106E4;0.864586!10483-107A6;0.01885!10282-104F3;0.0166053!10023-101D5;0.768513!10066-101I3;0.288086!10065-101I2;0.448904!10800-110I8;0.82169!10610-108F7;0.370485!10841-111E4;0.392758!10541-107H1;0.283132!10842-111E5;0.372519!10562-108A4;0.478565!10024-101D6;0.995063!10064-101I1;0.614894!10609-108F6;0.662522!10048-101G3;0.679701!10781-110G7;0.523846!10181-103D1;0.651809!10159-103A6;0.00283498!10056-101H2;0.00133954!10737-110B8;0.214725!10025-101D7;0.364014!10044-101F8;0.0676866!10424-106D1;0.0339254!10463-106H4;0.874249!10616-108G4;0.0524686!10486-107A9;0.860682!10062-101H8;0.0710895!10202-103F4;0.841198!10158-103A5;0.945749!10441-106E9;4.06835e-05!10031-101E4;0.129173!10063-101H9;0.000591647!10063-101H9;0.248887!11763-123H8;0.919711!11765-123I1;0.579715!11768-123I4;0.663006!10807-111A6;0.272165!10790-110H7;0.103935!10798-110I6;0.0242543!10786-110H3;0.0413298!10591-108D6;0.175867!10593-108D8;0.0569449!10590-108D5;0.0680788!10026-101D8;0.00118529!10096-102C6;0.00464416!10168-103B6;0.000341322!10154-103A1;0.000528591!10209-103G2;0.000931819!10061-101H7;0.659393!10027-101D9;0.476999!10043-101F7;0.96188!10783-110G9;0.295143!10028-101E1;0.0025507!10060-101H6;0.723367!10203-103F5;0.98523!10059-101H5;0.659077!10047-101G2;0.924712!10029-101E2;0.113118!10058-101H4;0.67234!10418-106C4;0.912425!10492-107B6;0.0192739!10694-109G1;0.0610588!10797-110I5;0.511969!10057-101H3;0.00534609!10100-102D1;0.933436!10055-101H1;0.804265!10204-103F6;0.513083!10191-103E2;0.328892!10563-108A5;0.119039
|name=10-GTGATGTCACT,CNhs11999,BestGuess:CREM_f1_HM09(0.731019089758793),T:1647.0(42.96%),B:14369.6(33.04%),P:1e-36
|name=10-GTGATGTCACT,CNhs11999,BestGuess:CREM_f1_HM09(0.731019089758793),T:1647.0(42.96%),B:14369.6(33.04%),P:1e-36
|tomtom_result=CREB1#MA0018.2;-1;0.00183458;0.873262;1;8;GTGATGTCACT;TGACGTCA;-!hth#MA0227.1;-3;0.00680744;3.24034;1;6;GTGATGTCACT;CTGTCA;-!CST6#MA0286.1;-1;0.00697862;3.32182;1;9;GTGATGTCACT;TTACGTCAT;-!NR4A2#MA0160.1;-2;0.00818297;3.89509;1;8;GTGATGTCACT;AAGGTCAC;+!vis#MA0252.1;-3;0.0123159;5.86235;1;6;GTGATGTCACT;CTGTCA;-!Pax2#MA0067.1;-4;0.0165136;7.86046;1;7;GTGATGTCACT;AGTCACGG;+!achi#MA0207.1;-3;0.0175374;8.34779;1;6;GTGATGTCACT;CTGTCA;-!BRCA1#MA0133.1;0;0.0195961;9.32774;1;7;GTGATGTCACT;GTGTTGT;-
}}
}}

Latest revision as of 14:19, 7 September 2012

Full Name: 10-GTGATGTCACT,CNhs11999,BestGuess:CREM_f1_HM09(0.731019089758793),T:1647.0(42.96%),B:14369.6(33.04%),P:1e-36

Motif matrix
POACGT
1125.172156.4651230.309135.054
2176.229123.525153.1711194.075
3153.171182.8171182.546128.466
41136.43176.229154.818179.523
5144.93669.174164.71268.19
6135.054146.5831208.898156.465
7146.583141.642139.9951218.78
8174.5821113.372182.817176.229
91231.956133.407131.76149.877
10149.8771200.663144.936151.524
11164.7158.112130.1131194.075

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CREB1#MA0018.2-10.001834580.87326218GTGATGTCACTTGACGTCA-
hth#MA0227.1-30.006807443.2403416GTGATGTCACTCTGTCA-
CST6#MA0286.1-10.006978623.3218219GTGATGTCACTTTACGTCAT-
NR4A2#MA0160.1-20.008182973.8950918GTGATGTCACTAAGGTCAC+
vis#MA0252.1-30.01231595.8623516GTGATGTCACTCTGTCA-
Pax2#MA0067.1-40.01651367.8604617GTGATGTCACTAGTCACGG+
achi#MA0207.1-30.01753748.3477916GTGATGTCACTCTGTCA-
BRCA1#MA0133.100.01959619.3277417GTGATGTCACTGTGTTGT-
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