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MacroAPE 1083:GTCACCCTCA,motif402: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;91.98;18.615;908.85;75.555!2;42.705;87.6;42.705;921.99!3;47.085;960.315;52.56;35.04!4;826.725;99.645;89.79;78.84!5;106.215;856.29;74.46;58.0...")
 
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03321!10828-111C9;0.418339!10788-110H5;0.677951!10792-110H9;0.529208!10765-110E9;0.748648!10829-111D1;0.745241!10830-111D2;0.780288!10831-111D3;0.0530831!10832-111D4;0.386322!10833-111D5;0.50594!10764-110E8;0.670833!10770-110F5;0.520491!10399-106A3;0.367102!10400-106A4;0.72724!10405-106A9;0.717072!10834-111D6;0.694754!10835-111D7;0.480594!10836-111D8;0.914325!10837-111D9;0.937467!10699-109G6;0.79545!10802-111A1;0.761114!10796-110I4;0.401958!10010-101C1;0.778405!10810-111A9;0.503416!10421-106C7;0.374998!10708-109H6;0.952411!12235-129G3;0.679898!12236-129G4;0.159816!12237-129G5;0.323268!10167-103B5;0.16349!10151-102I7;0.509212!10428-106D5;0.537781!10795-110I3;0.846552!10805-111A4;0.88065!10052-101G7;0.262371!10189-103D9;0.97327!10589-108D4;0.502685!10425-106D2;0.65718!10427-106D4;0.623874!10702-109G9;0.59032!10432-106D9;0.0162598!10496-107C1;0.782327!10718-109I7;0.467432!10011-101C2;0.679334!10053-101G8;0.928177!10686-109F2;0.429386!10084-102B3;0.17376!10012-101C3;0.594838!10085-102B4;0.590406!10482-107A5;0.466548!10419-106C5;0.819078!10080-102A8;0.946502!10760-110E4;0.987277!10709-109H7;0.292251!10710-109H8;0.574179!10703-109H1;0.735387!10719-109I8;0.667114!10642-109A3;0.292298!10177-103C6;0.751093!10164-103B2;0.459385!10173-103C2;0.529167!10166-103B4;0.763927!10083-102B2;0.792647!10188-103D8;0.757886!10552-107I3;0.5225!10553-107I4;0.727838!10013-101C4;0.233957!10536-107G5;0.788619!10618-108G6;0.82411!10423-106C9;0.532954!10785-110H2;0.38655!12238-129G6;0.753594!12239-129G7;0.175976!12240-129G8;0.64797!10416-106C2;0.0851055!10801-110I9;0.72621!10766-110F1;0.977208!10824-111C5;0.695098!10825-111C6;0.847225!10826-111C7;0.763564!10454-106G4;0.74782!10409-106B4;0.873496!10638-108I8;0.791756!10636-108I6;0.882706!10513-107D9;0.877007!10420-106C6;0.671538!10082-102B1;0.517262!10014-101C5;0.887595!10070-101I7;0.828646!10452-106G2;0.940453!10453-106G3;0.755695!10449-106F8;0.716993!10042-101F6;0.937457!10069-101I6;0.43339!10193-103E4;0.692694!10631-108I1;0.517061!10438-106E6;0.922892!10488-107B2;0.785809!10196-103E7;0.879973!10071-101I8;0.690701!10071-101I8;0.843418!10041-101F5;0.634626!10451-106G1;0.507157!10450-106F9;0.441173!10604-108F1;0.306002!10605-108F2;0.523747!10606-108F3;0.991588!10603-108E9;0.607814!10497-107C2;0.51521!10448-106F7;0.495024!10643-109A4;0.447912!10426-106D3;0.849396!10431-106D8;0.236919!10197-103E8;0.462067!10443-106F2;0.840465!10815-111B5;0.889726!10816-111B6;0.894738!10817-111B7;0.939926!10015-101C6;0.97292!10410-106B5;0.927306!10054-101G9;0.321704!10758-110E2;0.982395!10711-109H9;0.737512!10040-101F4;0.887601!10470-106I2;0.52784!10415-106C1;0.656876!10198-103E9;0.262903!10614-108G2;0.688806!10612-108F9;0.152122!10549-107H9;0.830617!10615-108G3;0.967098!10487-107B1;0.224082!10433-106E1;0.851243!10688-109F4;0.968425!10444-106F3;0.764312!10444-106F3;0.193156!10485-107A8;0.378575!10413-106B8;0.880178!10175-103C4;0.0644077!10161-103A8;0.500251!12131-128D7;0.504071!10624-108H3;0.250566!10712-109I1;0.0890432!10205-103F7;0.170117!10206-103F8;0.578332!10207-103F9;0.556633!10050-101G5;0.630348!10051-101G6;0.406718!10016-101C7;0.484821!10046-101G1;0.657946!10778-110G4;0.718295!10633-108I3;0.0507923!10818-111B8;0.320241!10819-111B9;0.595288!10820-111C1;0.589729!10484-107A7;0.562708!10808-111A7;0.585415!10169-103B7;0.975128!10153-102I9;0.633613!13425-144D5;0.530778!13433-144E4;0.17789!13437-144E8;0.218969!11904-125F5;0.293588!11905-125F6;0.778583!10039-101F3;0.191766!10791-110H8;0.508597!10017-101C8;0.366243!10045-101F9;0.767882!10509-107D5;0.39409!10839-111E2;0.402489!10692-109F8;0.76832!10079-102A7;0.358635!10078-102A6;0.740198!10721-110A1;0.353634!10569-108B2;0.828263!10570-108B3;0.300881!10571-108B4;0.0949016!10647-109A8;0.0963627!10752-110D5;0.946714!10782-110G8;0.431053!10726-110A6;0.00294982!10018-101C9;0.708185!10086-102B5;0.919383!10182-103D2;0.673501!10165-103B3;0.557217!10499-107C4;0.58196!10408-106B3;0.773603!10019-101D1;0.323644!10068-101I5;0.975261!10075-102A3;0.578559!10077-102A5;0.849041!10727-110A7;0.609105!10775-110G1;0.820298!10412-106B7;0.568714!12231-129F8;0.272898!12232-129F9;0.43847!12233-129G1;0.329213!12234-129G2;0.328646!10414-106B9;0.0698382!10170-103B8;0.586811!10183-103D3;0.57287!10150-102I6;0.540641!10174-103C3;0.614591!10155-103A2;0.483575!10038-101F2;0.436781!10838-111E1;0.45897!10759-110E3;0.204455!10514-107E1;0.161298!10465-106H6;0.697478!10691-109F7;0.966305!10843-111E6;0.38453!10844-111E7;0.574891!11747-123G1;0.829819!11748-123G2;0.0755641!11749-123G3;0.0236362!11750-123G4;0.0779064!11751-123G5;0.0768645!11840-124H4;0.0430512!11752-123G6;0.0698806!11753-123G7;0.0136282!11754-123G8;0.0147007!11755-123G9;0.144814!11756-123H1;0.127485!11833-124G6;0.605436!11760-123H5;0.000980956!11836-124G9;0.301924!11758-123H3;0.267068!11835-124G8;0.0847379!11762-123H7;0.216493!11838-124H2;0.0861353!11757-123H2;0.350952!11759-123H4;0.743033!11761-123H6;0.0293245!11842-124H6;0.231932!11837-124H1;0.10107!10568-108B1;0.198826!13230-141I8;0.370641!13231-141I9;0.21014!10696-109G3;0.261494!10493-107B7;0.573453!10494-107B8;0.891389!10850-111F4;0.839791!10851-111F5;0.526886!10852-111F6;0.773276!10853-111F7;0.195247!10854-111F8;0.400911!10855-111F9;0.824272!10856-111G1;0.0358307!10847-111F1;0.613287!10846-111E9;0.719654!10848-111F2;0.671653!10845-111E8;0.9292!10857-111G2;0.798511!10858-111G3;0.893281!10156-103A3;0.205008!11901-125F2;0.564112!11902-125F3;0.699805!11903-125F4;0.907094!10689-109F5;0.826626!10648-109A9;0.315018!10784-110H1;0.873153!10744-110C6;0.424083!10772-110F7;0.278276!10474-106I6;0.552827!10600-108E6;0.34789!10684-109E9;0.692166!12226-129F3;0.0776067!12227-129F4;0.790551!10508-107D4;0.896475!10539-107G8;0.771906!10607-108F4;0.705559!10555-107I6;0.173205!10774-110F9;0.167764!10637-108I7;0.16789!10663-109C6;0.179237!10728-110A8;0.0484323!10729-110A9;0.0248857!10430-106D7;0.407552!10730-110B1;0.792037!10813-111B3;0.694921!10812-111B2;0.0690817!10037-101F1;0.186352!10172-103C1;0.500446!10163-103B1;0.635631!10076-102A4;0.570498!10073-102A1;0.531645!10036-101E9;0.664997!10195-103E6;0.515378!10277-104E7;0.59481!10434-106E2;0.563622!10550-107I1;0.251366!10545-107H5;0.618167!10544-107H4;0.820239!10704-109H2;0.980767!10510-107D6;0.02735!10558-107I9;0.861794!10020-101D2;0.595236!10732-110B3;0.729072!10049-101G4;0.000920951!10698-109G5;0.15466!10437-106E5;0.360047!10417-106C3;0.993583!10035-101E8;0.92453!10171-103B9;0.536523!10157-103A4;0.631949!10034-101E7;0.579698!10072-101I9;0.518166!10199-103F1;0.690962!10200-103F2;0.418102!10697-109G4;0.856569!10723-110A3;0.579693!10179-103C8;0.326941!10160-103A7;0.68161!10180-103C9;0.648684!10162-103A9;0.740809!10021-101D3;0.723119!10840-111E3;0.794998!10706-109H4;0.989887!10033-101E6;0.857106!10032-101E5;0.634082!10490-107B4;0.548607!10439-106E7;0.926482!10022-101D4;0.878931!10176-103C5;0.657158!10469-106I1;0.578796!10067-101I4;0.625654!10411-106B6;0.913713!10471-106I3;0.594919!10030-101E3;0.989507!10475-106I7;0.520251!10787-110H4;0.735753!10477-106I9;0.499722!10695-109G2;0.370992!11771-123I7;0.705994!11772-123I8;0.365578!11773-123I9;0.501047!10093-102C3;0.659971!10442-106F1;0.863429!10442-106F1;0.774706!10201-103F3;0.89778!10639-108I9;0.662532!11843-124H7;0.516324!11841-124H5;0.487137!10693-109F9;0.985493!10436-106E4;0.648625!10483-107A6;0.913785!10282-104F3;0.834468!10023-101D5;0.229423!10066-101I3;0.50142!10065-101I2;0.871901!10800-110I8;0.747997!10610-108F7;0.496962!10841-111E4;0.743376!10541-107H1;0.88269!10842-111E5;0.653889!10562-108A4;0.315341!10024-101D6;0.243481!10064-101I1;0.602681!10609-108F6;0.769689!10048-101G3;0.694778!10781-110G7;0.521073!10181-103D1;0.77824!10159-103A6;0.468431!10056-101H2;0.468799!10737-110B8;0.523787!10025-101D7;0.430224!10044-101F8;0.283173!10424-106D1;0.33618!10463-106H4;0.600934!10616-108G4;0.695505!10486-107A9;0.963963!10062-101H8;0.624657!10202-103F4;0.667482!10158-103A5;0.807009!10441-106E9;0.460643!10031-101E4;0.544987!10063-101H9;0.490927!10063-101H9;0.646804!11763-123H8;0.503289!11765-123I1;0.315118!11768-123I4;0.281431!10807-111A6;0.229951!10790-110H7;0.434882!10798-110I6;0.615886!10786-110H3;0.0807223!10591-108D6;0.412872!10593-108D8;0.747304!10590-108D5;0.809039!10026-101D8;0.750503!10096-102C6;0.977039!10168-103B6;0.906093!10154-103A1;0.484953!10209-103G2;0.476978!10061-101H7;0.848651!10027-101D9;0.754983!10043-101F7;0.315271!10783-110G9;0.262066!10028-101E1;0.516042!10060-101H6;0.700105!10203-103F5;0.62899!10059-101H5;0.818171!10047-101G2;0.635954!10029-101E2;0.380042!10058-101H4;0.53855!10418-106C4;0.747901!10492-107B6;0.925974!10694-109G1;0.969937!10797-110I5;0.784383!10057-101H3;0.984707!10100-102D1;0.634283!10055-101H1;0.691323!10204-103F6;0.525421!10191-103E2;0.764431!10563-108A5;0.750052
|name=GTCACCCTCA,motif402,CNhs13485,T:1095.0(22.88%),B:12980.3(16.05%),P:1e-34
|name=GTCACCCTCA,motif402,CNhs13485,T:1095.0(22.88%),B:12980.3(16.05%),P:1e-34
|tomtom_result=ESR1#MA0112.2;7;0.000133461;0.0635274;0.126754;10;GTCACCCTCA;GGCCCAGGTCACCCTGACCT;+!ESR2#MA0258.1;3;0.00152945;0.72802;0.420015;10;GTCACCCTCA;CAGGTCACCGTGACCTTG;-!ESR1#MA0112.2;4;0.00159534;0.759382;0.420015;10;GTCACCCTCA;CCAGGTCACCGTGACCCC;+!PPARG#MA0066.1;5;0.00238028;1.13301;0.420015;10;GTCACCCTCA;AGTAGGTCACCGTGACCTAC;-!CREB1#MA0018.1;3;0.00238296;1.13429;0.420015;9;GTCACCCTCA;GACGTCACCAGG;-!MZF1_5-13#MA0057.1;0;0.00265343;1.26303;0.420015;10;GTCACCCTCA;TTCCCCCTAC;-!REB1#MA0363.1;0;0.00566699;2.69749;0.672777;9;GTCACCCTCA;GTTACCCGG;+!GCN4#MA0303.1;10;0.0106686;5.07823;0.96668;10;GTCACCCTCA;CAAGGGATGAGTCATACTTCA;+!Spz1#MA0111.1;3;0.0106956;5.0911;0.96668;8;GTCACCCTCA;GCTGTTACCCT;-!ABF1#MA0265.1;2;0.0132094;6.28766;0.96668;10;GTCACCCTCA;ATATCACTTTATACGA;-!hkb#MA0450.1;-1;0.0137726;6.55574;0.96668;9;GTCACCCTCA;TCACGCCCC;-!ZMS1#MA0441.1;-1;0.0142496;6.7828;0.96668;9;GTCACCCTCA;TTCCCCGCA;+!AFT2#MA0270.1;0;0.0201855;9.60831;0.997635;8;GTCACCCTCA;CACACCCC;+!NR4A2#MA0160.1;0;0.0209243;9.95995;0.997635;8;GTCACCCTCA;GTGACCTT;-
}}
}}

Latest revision as of 14:25, 7 September 2012

Full Name: GTCACCCTCA,motif402,CNhs13485,T:1095.0(22.88%),B:12980.3(16.05%),P:1e-34

Motif matrix
POACGT
191.9818.615908.8575.555
242.70587.642.705921.99
347.085960.31552.5635.04
4826.72599.64589.7978.84
5106.215856.2974.4658.035
676.65819.0695.265104.025
781.03931.84552.5629.565
879.93525.185109.5880.38
930.66885.85563.51114.975
10771.975124.8360.225137.97

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

ESR1#MA0112.270.0001334610.06352740.12675410GTCACCCTCAGGCCCAGGTCACCCTGACCT+
ESR2#MA0258.130.001529450.728020.42001510GTCACCCTCACAGGTCACCGTGACCTTG-
ESR1#MA0112.240.001595340.7593820.42001510GTCACCCTCACCAGGTCACCGTGACCCC+
PPARG#MA0066.150.002380281.133010.42001510GTCACCCTCAAGTAGGTCACCGTGACCTAC-
CREB1#MA0018.130.002382961.134290.4200159GTCACCCTCAGACGTCACCAGG-
MZF1_5-13#MA0057.100.002653431.263030.42001510GTCACCCTCATTCCCCCTAC-
REB1#MA0363.100.005666992.697490.6727779GTCACCCTCAGTTACCCGG+
GCN4#MA0303.1100.01066865.078230.9666810GTCACCCTCACAAGGGATGAGTCATACTTCA+
Spz1#MA0111.130.01069565.09110.966688GTCACCCTCAGCTGTTACCCT-
ABF1#MA0265.120.01320946.287660.9666810GTCACCCTCAATATCACTTTATACGA-
hkb#MA0450.1-10.01377266.555740.966689GTCACCCTCATCACGCCCC-
ZMS1#MA0441.1-10.01424966.78280.966689GTCACCCTCATTCCCCGCA+
AFT2#MA0270.100.02018559.608310.9976358GTCACCCTCACACACCCC+
NR4A2#MA0160.100.02092439.959950.9976358GTCACCCTCAGTGACCTT-