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MacroAPE 1083:AATTCCCGG,motif577: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1101.6;52.65;124.2;71.55!2;1031.4;121.5;128.25;68.85!3;130.95;112.05;110.7;996.3!4;68.85;99.9;28.35;1152.9!5;59.4;1113.75;70.2;106.65!6;35.1...")
 
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10789-110H6;0.882551!10828-111C9;0.61331!10788-110H5;0.286132!10792-110H9;0.902988!10765-110E9;0.964532!10829-111D1;0.881737!10830-111D2;0.948817!10831-111D3;0.409655!10832-111D4;0.108099!10833-111D5;0.813274!10764-110E8;0.757582!10770-110F5;0.520448!10399-106A3;0.72038!10400-106A4;0.962517!10405-106A9;0.901256!10834-111D6;0.944349!10835-111D7;0.773216!10836-111D8;0.621035!10837-111D9;0.52861!10699-109G6;0.778185!10802-111A1;0.107861!10796-110I4;0.747678!10010-101C1;0.396197!10810-111A9;0.397003!10421-106C7;0.0168364!10708-109H6;0.513622!12235-129G3;0.310347!12236-129G4;0.794861!12237-129G5;0.339203!10167-103B5;0.793897!10151-102I7;0.0164435!10428-106D5;0.0201345!10795-110I3;0.0716805!10805-111A4;0.562379!10052-101G7;0.870566!10189-103D9;0.47077!10589-108D4;0.985672!10425-106D2;0.860427!10427-106D4;0.100361!10702-109G9;0.50691!10432-106D9;0.677693!10496-107C1;0.0633903!10718-109I7;0.113257!10011-101C2;0.596733!10053-101G8;0.442461!10686-109F2;0.375385!10084-102B3;0.044599!10012-101C3;0.0253947!10085-102B4;0.0258736!10482-107A5;0.00343391!10419-106C5;0.343318!10080-102A8;0.161633!10760-110E4;0.628741!10709-109H7;0.611746!10710-109H8;0.553359!10703-109H1;0.341281!10719-109I8;0.96496!10642-109A3;0.541362!10177-103C6;0.670498!10164-103B2;0.0617083!10173-103C2;0.0311339!10166-103B4;0.0245741!10083-102B2;0.0372839!10188-103D8;0.0112154!10552-107I3;0.0269394!10553-107I4;0.182335!10013-101C4;0.684645!10536-107G5;0.265273!10618-108G6;0.0505261!10423-106C9;0.376245!10785-110H2;0.111671!12238-129G6;0.130559!12239-129G7;0.191549!12240-129G8;0.877339!10416-106C2;0.241955!10801-110I9;0.825552!10766-110F1;0.425258!10824-111C5;0.494129!10825-111C6;0.649666!10826-111C7;0.454382!10454-106G4;0.462588!10409-106B4;0.780074!10638-108I8;0.556811!10636-108I6;0.0260124!10513-107D9;0.021859!10420-106C6;0.526632!10082-102B1;0.35286!10014-101C5;0.500937!10070-101I7;0.397352!10452-106G2;0.489288!10453-106G3;0.0206286!10449-106F8;0.109207!10042-101F6;0.075103!10069-101I6;0.0481777!10193-103E4;0.219011!10631-108I1;0.0281213!10438-106E6;0.688216!10488-107B2;0.976345!10196-103E7;0.258992!10071-101I8;0.364067!10071-101I8;0.247849!10041-101F5;0.00385086!10451-106G1;0.324614!10450-106F9;0.00459568!10604-108F1;0.360185!10605-108F2;0.0231587!10606-108F3;0.00507853!10603-108E9;0.0268256!10497-107C2;0.0169548!10448-106F7;0.119443!10643-109A4;0.103351!10426-106D3;0.889992!10431-106D8;0.112605!10197-103E8;0.0907176!10443-106F2;0.0933829!10815-111B5;0.128546!10816-111B6;0.222981!10817-111B7;0.0883787!10015-101C6;0.206038!10410-106B5;0.236556!10054-101G9;0.783464!10758-110E2;0.107602!10711-109H9;0.0144423!10040-101F4;0.000227894!10470-106I2;0.0152317!10415-106C1;0.166467!10198-103E9;0.0677327!10614-108G2;0.256761!10612-108F9;0.671044!10549-107H9;0.450492!10615-108G3;0.0604727!10487-107B1;0.41954!10433-106E1;0.402879!10688-109F4;0.0380435!10444-106F3;0.558537!10444-106F3;0.000957109!10485-107A8;0.0031125!10413-106B8;0.451618!10175-103C4;0.509862!10161-103A8;0.112267!12131-128D7;0.0975096!10624-108H3;0.402991!10712-109I1;0.449807!10205-103F7;0.669138!10206-103F8;0.282187!10207-103F9;0.156371!10050-101G5;0.205166!10051-101G6;0.257579!10016-101C7;0.136949!10046-101G1;0.167484!10778-110G4;0.236895!10633-108I3;0.262434!10818-111B8;0.490375!10819-111B9;0.173661!10820-111C1;0.23238!10484-107A7;0.168415!10808-111A7;0.0364879!10169-103B7;0.51295!10153-102I9;0.0323885!13425-144D5;0.0297323!13433-144E4;0.290653!13437-144E8;0.325176!11904-125F5;0.24444!11905-125F6;0.0965534!10039-101F3;0.274409!10791-110H8;0.0126323!10017-101C8;0.435209!10045-101F9;0.0864519!10509-107D5;0.49321!10839-111E2;0.113457!10692-109F8;0.890218!10079-102A7;0.0988258!10078-102A6;0.274834!10721-110A1;0.119919!10569-108B2;0.281977!10570-108B3;0.128418!10571-108B4;0.031118!10647-109A8;0.0703953!10752-110D5;0.00114287!10782-110G8;0.739203!10726-110A6;0.854726!10018-101C9;0.10471!10086-102B5;0.191086!10182-103D2;0.245606!10165-103B3;0.0417025!10499-107C4;0.0316111!10408-106B3;0.116519!10019-101D1;0.0144602!10068-101I5;0.871376!10075-102A3;0.983087!10077-102A5;0.928429!10727-110A7;0.726459!10775-110G1;0.280569!10412-106B7;0.270719!12231-129F8;0.264164!12232-129F9;0.393632!12233-129G1;0.290068!12234-129G2;0.25172!10414-106B9;0.266706!10170-103B8;0.449309!10183-103D3;0.0419321!10150-102I6;0.0280852!10174-103C3;0.0306603!10155-103A2;0.115433!10038-101F2;0.0563773!10838-111E1;0.0432245!10759-110E3;0.940494!10514-107E1;0.357702!10465-106H6;0.165976!10691-109F7;0.861193!10843-111E6;0.0127152!10844-111E7;0.965395!11747-123G1;0.543399!11748-123G2;0.128384!11749-123G3;0.434045!11750-123G4;0.682126!11751-123G5;0.655283!11840-124H4;0.8954!11752-123G6;0.640688!11753-123G7;0.0444016!11754-123G8;0.129877!11755-123G9;0.00323811!11756-123H1;0.000118907!11833-124G6;0.0174504!11760-123H5;0.171401!11836-124G9;0.0281368!11758-123H3;0.183395!11835-124G8;0.306967!11762-123H7;0.510119!11838-124H2;0.228666!11757-123H2;0.819216!11759-123H4;0.162709!11761-123H6;0.0613558!11842-124H6;0.116142!11837-124H1;0.749784!10568-108B1;0.677342!13230-141I8;0.766906!13231-141I9;0.602684!10696-109G3;0.569367!10493-107B7;0.0389847!10494-107B8;0.0687831!10850-111F4;0.00154149!10851-111F5;0.257859!10852-111F6;0.00645735!10853-111F7;0.762874!10854-111F8;0.113261!10855-111F9;0.34163!10856-111G1;0.353064!10847-111F1;0.200423!10846-111E9;0.0902472!10848-111F2;0.0324385!10845-111E8;0.358116!10857-111G2;0.155208!10858-111G3;0.486008!10156-103A3;0.728507!11901-125F2;0.0334543!11902-125F3;0.623283!11903-125F4;0.429643!10689-109F5;0.463087!10648-109A9;0.16012!10784-110H1;0.0620219!10744-110C6;0.0488571!10772-110F7;0.578492!10474-106I6;0.83722!10600-108E6;0.641287!10684-109E9;0.00535793!12226-129F3;0.00149431!12227-129F4;0.89363!10508-107D4;0.0587985!10539-107G8;0.230875!10607-108F4;0.47007!10555-107I6;0.975944!10774-110F9;0.341676!10637-108I7;0.396214!10663-109C6;0.100169!10728-110A8;0.0401138!10729-110A9;0.0119269!10430-106D7;0.284679!10730-110B1;0.441784!10813-111B3;0.611962!10812-111B2;0.991568!10037-101F1;0.962611!10172-103C1;0.0179159!10163-103B1;0.0361953!10076-102A4;0.0555278!10073-102A1;0.0252285!10036-101E9;0.0133525!10195-103E6;0.0159706!10277-104E7;0.0193219!10434-106E2;0.464083!10550-107I1;0.150915!10545-107H5;0.430731!10544-107H4;0.347067!10704-109H2;0.29918!10510-107D6;0.0108381!10558-107I9;0.0033698!10020-101D2;0.273992!10732-110B3;0.424404!10049-101G4;0.0036959!10698-109G5;0.734258!10437-106E5;0.154508!10417-106C3;0.0564548!10035-101E8;0.0564026!10171-103B9;0.0170921!10157-103A4;0.0563099!10034-101E7;0.0377596!10072-101I9;0.0199717!10199-103F1;0.0268608!10200-103F2;0.48597!10697-109G4;0.146323!10723-110A3;0.553753!10179-103C8;0.120693!10160-103A7;0.0752514!10180-103C9;0.235345!10162-103A9;0.117206!10021-101D3;0.240524!10840-111E3;0.684202!10706-109H4;0.640294!10033-101E6;0.187452!10032-101E5;0.0171353!10490-107B4;0.0133645!10439-106E7;0.108658!10022-101D4;0.104493!10176-103C5;0.335735!10469-106I1;0.0402825!10067-101I4;0.164052!10411-106B6;0.551406!10471-106I3;2.24395e-05!10030-101E3;0.0484311!10475-106I7;0.0492949!10787-110H4;0.485963!10477-106I9;0.632112!10695-109G2;0.577096!11771-123I7;0.917483!11772-123I8;0.650171!11773-123I9;0.952017!10093-102C3;0.220868!10442-106F1;0.498272!10442-106F1;0.0242012!10201-103F3;0.0759456!10639-108I9;0.411214!11843-124H7;0.25331!11841-124H5;0.369799!10693-109F9;0.899101!10436-106E4;0.700908!10483-107A6;0.61967!10282-104F3;0.503783!10023-101D5;0.0848121!10066-101I3;0.0797565!10065-101I2;0.115179!10800-110I8;0.144584!10610-108F7;0.174159!10841-111E4;0.399186!10541-107H1;0.693775!10842-111E5;0.321416!10562-108A4;0.920482!10024-101D6;0.590236!10064-101I1;0.395664!10609-108F6;0.177211!10048-101G3;0.197122!10781-110G7;0.721998!10181-103D1;0.0834361!10159-103A6;0.148971!10056-101H2;0.113906!10737-110B8;0.0261196!10025-101D7;0.0770976!10044-101F8;0.959717!10424-106D1;0.948926!10463-106H4;0.415925!10616-108G4;0.0171466!10486-107A9;0.0293884!10062-101H8;0.452165!10202-103F4;0.593433!10158-103A5;0.287525!10441-106E9;0.161305!10031-101E4;0.568584!10063-101H9;0.0107668!10063-101H9;0.0151698!11763-123H8;0.0616236!11765-123I1;0.607594!11768-123I4;0.81231!10807-111A6;0.945545!10790-110H7;0.4561!10798-110I6;0.770057!10786-110H3;0.0407415!10591-108D6;0.834201!10593-108D8;0.544639!10590-108D5;0.277652!10026-101D8;0.826784!10096-102C6;0.104968!10168-103B6;0.0258063!10154-103A1;0.0613715!10209-103G2;0.0851124!10061-101H7;0.164893!10027-101D9;0.153072!10043-101F7;0.413639!10783-110G9;0.614958!10028-101E1;0.0127421!10060-101H6;0.121383!10203-103F5;0.117987!10059-101H5;0.0752172!10047-101G2;0.082539!10029-101E2;0.434527!10058-101H4;0.521725!10418-106C4;0.243376!10492-107B6;0.0701747!10694-109G1;0.00132696!10797-110I5;0.410647!10057-101H3;0.525103!10100-102D1;0.368755!10055-101H1;0.45469!10204-103F6;0.237886!10191-103E2;0.996452!10563-108A5;0.239039
|name=AATTCCCGG,motif577,CNhs12560,T:1350.0(48.95%),B:26720.6(38.03%),P:1e-30
|name=AATTCCCGG,motif577,CNhs12560,T:1350.0(48.95%),B:26720.6(38.03%),P:1e-30
|tomtom_result=PUT3#MA0358.1;-2;0.000335275;0.159591;0.166459;7;AATTCCCGG;TTCCCGGG;-!LYS14#MA0325.1;0;0.000353477;0.168255;0.166459;8;AATTCCCGG;AATTCCGG;-!STAT1#MA0137.2;1;0.000716004;0.340818;0.224786;9;AATTCCCGG;CATTTCCCGGAAACC;+!RELA#MA0107.1;3;0.0024209;1.15235;0.474371;7;AATTCCCGG;GGAAATTCCC;-!NF-kappaB#MA0061.1;3;0.00251833;1.19872;0.474371;7;AATTCCCGG;GGAAATTCCC;-!ARO80#MA0273.1;3;0.00413227;1.96696;0.538558;9;AATTCCCGG;GATAATTCTCGGCAAGTATGT;+!YPR196W#MA0437.1;0;0.00438437;2.08696;0.538558;9;AATTCCCGG;ATTTCTCCG;+!REL#MA0101.1;2;0.00523644;2.49255;0.538558;8;AATTCCCGG;GGAAATCCCC;-!YRM1#MA0438.1;-1;0.00612889;2.91735;0.538558;8;AATTCCCGG;ATTTCCGT;-!FEV#MA0156.1;-1;0.00688135;3.27552;0.540092;8;AATTCCCGG;ATTTCCTG;-!Stat3#MA0144.1;-1;0.00778353;3.70496;0.540483;8;AATTCCCGG;CTTCCTGGAA;-!NHP10#MA0344.1;-2;0.00803405;3.82421;0.540483;7;AATTCCCGG;TCCCCGGC;-!CAT8#MA0280.1;-3;0.010046;4.7819;0.58174;6;AATTCCCGG;TTCCGG;-!OAF1#MA0348.1;0;0.0105972;5.04426;0.58174;9;AATTCCCGG;TATCTCCGA;-!ASG1#MA0275.1;-3;0.0116939;5.5663;0.58174;6;AATTCCCGG;TTCCGG;-!HOXA5#MA0158.1;0;0.0117356;5.58617;0.58174;8;AATTCCCGG;AATTAGTG;-!Eip74EF#MA0026.1;-2;0.0152909;7.27848;0.632141;7;AATTCCCGG;CTTCCGG;-!YJL103C#MA0427.1;-1;0.0154285;7.34399;0.632141;8;AATTCCCGG;AGCTCCGGAGA;+!ELK4#MA0076.1;-1;0.0158722;7.55516;0.632141;8;AATTCCCGG;ACTTCCGGT;-!TEC1#MA0406.1;1;0.0168613;8.02596;0.632141;7;AATTCCCGG;ACATTCCC;+!znf143#MA0088.1;1;0.0181456;8.63731;0.632141;9;AATTCCCGG;GATTTCCCATAATGCCTTGC;+!REB1#MA0363.1;0;0.0187333;8.91707;0.632141;9;AATTCCCGG;GTTACCCGG;+!YRR1#MA0439.1;2;0.0187497;8.92487;0.632141;9;AATTCCCGG;CTTATCTCCGC;+!dl_2#MA0023.1;2;0.0191746;9.12709;0.632141;8;AATTCCCGG;GGAAAACCCC;-!TP53#MA0106.1;1;0.0194988;9.28143;0.632141;9;AATTCCCGG;ACATGCCCGGGCATGTCCGG;-!sd#MA0243.1;2;0.0201354;9.58443;0.632141;9;AATTCCCGG;GACATTCCTCGA;+
}}
}}

Latest revision as of 14:27, 7 September 2012

Full Name: AATTCCCGG,motif577,CNhs12560,T:1350.0(48.95%),B:26720.6(38.03%),P:1e-30

Motif matrix
POACGT
11101.652.65124.271.55
21031.4121.5128.2568.85
3130.95112.05110.7996.3
468.8599.928.351152.9
559.41113.7570.2106.65
635.11119.1593.15102.6
7151.2977.498.55122.85
8166.05140.4892.35151.2
971.55112.051067.8598.55

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PUT3#MA0358.1-20.0003352750.1595910.1664597AATTCCCGGTTCCCGGG-
LYS14#MA0325.100.0003534770.1682550.1664598AATTCCCGGAATTCCGG-
STAT1#MA0137.210.0007160040.3408180.2247869AATTCCCGGCATTTCCCGGAAACC+
RELA#MA0107.130.00242091.152350.4743717AATTCCCGGGGAAATTCCC-
NF-kappaB#MA0061.130.002518331.198720.4743717AATTCCCGGGGAAATTCCC-
ARO80#MA0273.130.004132271.966960.5385589AATTCCCGGGATAATTCTCGGCAAGTATGT+
YPR196W#MA0437.100.004384372.086960.5385589AATTCCCGGATTTCTCCG+
REL#MA0101.120.005236442.492550.5385588AATTCCCGGGGAAATCCCC-
YRM1#MA0438.1-10.006128892.917350.5385588AATTCCCGGATTTCCGT-
FEV#MA0156.1-10.006881353.275520.5400928AATTCCCGGATTTCCTG-
Stat3#MA0144.1-10.007783533.704960.5404838AATTCCCGGCTTCCTGGAA-
NHP10#MA0344.1-20.008034053.824210.5404837AATTCCCGGTCCCCGGC-
CAT8#MA0280.1-30.0100464.78190.581746AATTCCCGGTTCCGG-
OAF1#MA0348.100.01059725.044260.581749AATTCCCGGTATCTCCGA-
ASG1#MA0275.1-30.01169395.56630.581746AATTCCCGGTTCCGG-
HOXA5#MA0158.100.01173565.586170.581748AATTCCCGGAATTAGTG-
Eip74EF#MA0026.1-20.01529097.278480.6321417AATTCCCGGCTTCCGG-
YJL103C#MA0427.1-10.01542857.343990.6321418AATTCCCGGAGCTCCGGAGA+
ELK4#MA0076.1-10.01587227.555160.6321418AATTCCCGGACTTCCGGT-
TEC1#MA0406.110.01686138.025960.6321417AATTCCCGGACATTCCC+
znf143#MA0088.110.01814568.637310.6321419AATTCCCGGGATTTCCCATAATGCCTTGC+
REB1#MA0363.100.01873338.917070.6321419AATTCCCGGGTTACCCGG+
YRR1#MA0439.120.01874978.924870.6321419AATTCCCGGCTTATCTCCGC+
dl_2#MA0023.120.01917469.127090.6321418AATTCCCGGGGAAAACCCC-
TP53#MA0106.110.01949889.281430.6321419AATTCCCGGACATGCCCGGGCATGTCCGG-
sd#MA0243.120.02013549.584430.6321419AATTCCCGGGACATTCCTCGA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:AATTCCCGG,motif577&oldid=2134366"