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MacroAPE 1083:8-AGCAGAAGTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;357.0;21.896;0.476;96.628!2;0.476;160.412;303.688;11.424!3;0.476;440.776;34.272;0.476!4;474.572;0.476;0.476;0.476!5;73.78;35.224;364.616;2.3...")
 
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0464-106H5;0.121749!10827-111C8;0.0597485!10789-110H6;0.988636!10828-111C9;0.411297!10788-110H5;0.79101!10792-110H9;0.266352!10765-110E9;0.445014!10829-111D1;0.892788!10830-111D2;0.370448!10831-111D3;0.618394!10832-111D4;0.728927!10833-111D5;0.741364!10764-110E8;0.921211!10770-110F5;0.793478!10399-106A3;0.924599!10400-106A4;0.670797!10405-106A9;0.564005!10834-111D6;0.501665!10835-111D7;0.722294!10836-111D8;0.00980892!10837-111D9;0.222897!10699-109G6;0.900487!10802-111A1;0.847873!10796-110I4;0.401795!10010-101C1;0.0737479!10810-111A9;0.752125!10421-106C7;0.289965!10708-109H6;0.498237!12235-129G3;0.967112!12236-129G4;0.110828!12237-129G5;0.848816!10167-103B5;0.25604!10151-102I7;0.285994!10428-106D5;0.275969!10795-110I3;0.401098!10805-111A4;0.228037!10052-101G7;0.258039!10189-103D9;0.581726!10589-108D4;0.613451!10425-106D2;0.384444!10427-106D4;0.167989!10702-109G9;0.646057!10432-106D9;0.154888!10496-107C1;0.306252!10718-109I7;0.3772!10011-101C2;0.737826!10053-101G8;0.312291!10686-109F2;0.76949!10084-102B3;0.26018!10012-101C3;0.471655!10085-102B4;0.325934!10482-107A5;0.724554!10419-106C5;0.973297!10080-102A8;0.329155!10760-110E4;0.443301!10709-109H7;0.662926!10710-109H8;0.0311748!10703-109H1;0.13039!10719-109I8;0.398686!10642-109A3;0.866162!10177-103C6;0.95109!10164-103B2;0.45831!10173-103C2;0.350807!10166-103B4;0.533645!10083-102B2;0.621024!10188-103D8;0.637015!10552-107I3;0.216198!10553-107I4;0.202666!10013-101C4;0.203399!10536-107G5;0.264115!10618-108G6;0.722961!10423-106C9;0.564848!10785-110H2;0.381417!12238-129G6;0.00752669!12239-129G7;0.115718!12240-129G8;0.157446!10416-106C2;0.395754!10801-110I9;0.0526699!10766-110F1;0.773799!10824-111C5;0.643554!10825-111C6;0.319028!10826-111C7;0.279428!10454-106G4;0.374548!10409-106B4;0.854607!10638-108I8;0.122275!10636-108I6;0.0131351!10513-107D9;0.0494082!10420-106C6;0.516017!10082-102B1;0.281112!10014-101C5;0.669285!10070-101I7;0.99956!10452-106G2;0.837357!10453-106G3;0.369252!10449-106F8;0.358637!10042-101F6;0.414121!10069-101I6;0.615147!10193-103E4;0.308938!10631-108I1;0.260176!10438-106E6;0.633141!10488-107B2;0.481825!10196-103E7;0.421336!10071-101I8;0.705331!10071-101I8;0.8908!10041-101F5;0.473554!10451-106G1;0.380028!10450-106F9;0.359248!10604-108F1;0.567638!10605-108F2;0.706277!10606-108F3;0.206776!10603-108E9;0.599616!10497-107C2;0.23041!10448-106F7;0.112348!10643-109A4;0.441219!10426-106D3;0.0395725!10431-106D8;0.141353!10197-103E8;0.18842!10443-106F2;0.146135!10815-111B5;0.605055!10816-111B6;0.0583847!10817-111B7;0.0429934!10015-101C6;0.0529838!10410-106B5;0.516183!10054-101G9;0.5477!10758-110E2;0.24136!10711-109H9;0.792419!10040-101F4;0.851622!10470-106I2;0.316212!10415-106C1;0.0199231!10198-103E9;0.284136!10614-108G2;0.708414!10612-108F9;0.0814087!10549-107H9;0.175458!10615-108G3;0.451225!10487-107B1;0.5285!10433-106E1;0.389607!10688-109F4;0.0308767!10444-106F3;0.0214156!10444-106F3;0.613416!10485-107A8;0.386628!10413-106B8;0.300957!10175-103C4;0.505445!10161-103A8;0.483658!12131-128D7;0.55819!10624-108H3;0.153144!10712-109I1;0.432581!10205-103F7;0.595173!10206-103F8;0.730598!10207-103F9;0.500007!10050-101G5;0.475294!10051-101G6;0.429663!10016-101C7;0.96174!10046-101G1;0.85902!10778-110G4;0.99406!10633-108I3;0.00346667!10818-111B8;0.832034!10819-111B9;0.211199!10820-111C1;0.192951!10484-107A7;0.271273!10808-111A7;0.209382!10169-103B7;0.0672187!10153-102I9;0.298019!13425-144D5;0.299214!13433-144E4;0.0986488!13437-144E8;0.277589!11904-125F5;0.526278!11905-125F6;0.888661!10039-101F3;0.444251!10791-110H8;0.292283!10017-101C8;0.183855!10045-101F9;0.838173!10509-107D5;0.712514!10839-111E2;0.783389!10692-109F8;0.406502!10079-102A7;0.526383!10078-102A6;0.545204!10721-110A1;0.990335!10569-108B2;0.337247!10570-108B3;0.0657214!10571-108B4;0.000183501!10647-109A8;0.0107893!10752-110D5;0.987563!10782-110G8;0.939394!10726-110A6;0.406467!10018-101C9;0.0997044!10086-102B5;0.723579!10182-103D2;0.265307!10165-103B3;0.534367!10499-107C4;0.524272!10408-106B3;0.204922!10019-101D1;0.331529!10068-101I5;0.614812!10075-102A3;0.64724!10077-102A5;0.486052!10727-110A7;0.299834!10775-110G1;0.720402!10412-106B7;0.937777!12231-129F8;0.665298!12232-129F9;0.110763!12233-129G1;0.493338!12234-129G2;0.196591!10414-106B9;0.0750054!10170-103B8;0.313006!10183-103D3;0.389815!10150-102I6;0.298059!10174-103C3;0.334066!10155-103A2;0.478551!10038-101F2;0.419601!10838-111E1;0.505107!10759-110E3;0.422531!10514-107E1;0.27837!10465-106H6;0.206287!10691-109F7;0.624311!10843-111E6;0.0330482!10844-111E7;0.13094!11747-123G1;0.530941!11748-123G2;0.260388!11749-123G3;0.104382!11750-123G4;0.434768!11751-123G5;0.665176!11840-124H4;0.663364!11752-123G6;0.92057!11753-123G7;0.512656!11754-123G8;0.795392!11755-123G9;0.258878!11756-123H1;0.916386!11833-124G6;0.298337!11760-123H5;0.508962!11836-124G9;0.392273!11758-123H3;0.24963!11835-124G8;0.0638119!11762-123H7;0.0256928!11838-124H2;0.331699!11757-123H2;0.0131648!11759-123H4;0.186696!11761-123H6;0.359668!11842-124H6;0.249004!11837-124H1;0.495751!10568-108B1;0.0111078!13230-141I8;0.252856!13231-141I9;0.0511109!10696-109G3;0.0878763!10493-107B7;0.191791!10494-107B8;0.412413!10850-111F4;0.627272!10851-111F5;0.891421!10852-111F6;0.677438!10853-111F7;0.103474!10854-111F8;0.282849!10855-111F9;0.350065!10856-111G1;0.129611!10847-111F1;0.614219!10846-111E9;0.934838!10848-111F2;0.649729!10845-111E8;0.478955!10857-111G2;0.726923!10858-111G3;0.506402!10156-103A3;0.989958!11901-125F2;0.353512!11902-125F3;0.858338!11903-125F4;0.904346!10689-109F5;0.690081!10648-109A9;0.796182!10784-110H1;0.861575!10744-110C6;0.768675!10772-110F7;0.793263!10474-106I6;0.524505!10600-108E6;0.839248!10684-109E9;0.366624!12226-129F3;0.875546!12227-129F4;0.276885!10508-107D4;0.851152!10539-107G8;0.629082!10607-108F4;0.770315!10555-107I6;0.0419286!10774-110F9;0.731359!10637-108I7;0.218376!10663-109C6;0.392852!10728-110A8;0.612538!10729-110A9;0.733155!10430-106D7;0.0850428!10730-110B1;0.199538!10813-111B3;0.688955!10812-111B2;0.185931!10037-101F1;0.053306!10172-103C1;0.3398!10163-103B1;0.317425!10076-102A4;0.375851!10073-102A1;0.376119!10036-101E9;0.859604!10195-103E6;0.325524!10277-104E7;0.335177!10434-106E2;0.970442!10550-107I1;0.199199!10545-107H5;0.0991511!10544-107H4;0.613282!10704-109H2;0.197551!10510-107D6;0.0433803!10558-107I9;0.498913!10020-101D2;0.596455!10732-110B3;0.476185!10049-101G4;0.831672!10698-109G5;0.452727!10437-106E5;0.118607!10417-106C3;0.560413!10035-101E8;0.121497!10171-103B9;0.333709!10157-103A4;0.330957!10034-101E7;0.351901!10072-101I9;0.355158!10199-103F1;0.902379!10200-103F2;0.419902!10697-109G4;0.14441!10723-110A3;0.123959!10179-103C8;0.554367!10160-103A7;0.177879!10180-103C9;0.200972!10162-103A9;0.180216!10021-101D3;0.258095!10840-111E3;0.585622!10706-109H4;0.741917!10033-101E6;0.111951!10032-101E5;0.42337!10490-107B4;0.326802!10439-106E7;0.0664335!10022-101D4;0.0951399!10176-103C5;0.428749!10469-106I1;0.417672!10067-101I4;0.940043!10411-106B6;0.784392!10471-106I3;0.0523703!10030-101E3;0.0238005!10475-106I7;0.344531!10787-110H4;0.272913!10477-106I9;0.689984!10695-109G2;0.613656!11771-123I7;0.20651!11772-123I8;0.183854!11773-123I9;0.230687!10093-102C3;0.0726606!10442-106F1;0.937844!10442-106F1;0.960136!10201-103F3;0.967166!10639-108I9;0.470408!11843-124H7;0.0471846!11841-124H5;0.096415!10693-109F9;0.980879!10436-106E4;0.0117786!10483-107A6;0.162913!10282-104F3;0.0948098!10023-101D5;0.321202!10066-101I3;0.422179!10065-101I2;0.307433!10800-110I8;0.485951!10610-108F7;0.387006!10841-111E4;0.471712!10541-107H1;0.926469!10842-111E5;0.640216!10562-108A4;0.573363!10024-101D6;0.114952!10064-101I1;0.891079!10609-108F6;0.888365!10048-101G3;0.240268!10781-110G7;0.314937!10181-103D1;0.358722!10159-103A6;0.423095!10056-101H2;0.274715!10737-110B8;0.362056!10025-101D7;0.0476517!10044-101F8;0.252402!10424-106D1;0.616793!10463-106H4;0.430855!10616-108G4;0.109788!10486-107A9;0.520707!10062-101H8;0.550908!10202-103F4;0.558099!10158-103A5;0.407041!10441-106E9;0.46663!10031-101E4;0.739553!10063-101H9;0.284114!10063-101H9;0.758534!11763-123H8;0.464271!11765-123I1;0.677876!11768-123I4;0.606367!10807-111A6;0.636449!10790-110H7;0.375658!10798-110I6;0.418693!10786-110H3;0.0719687!10591-108D6;0.514875!10593-108D8;0.35176!10590-108D5;0.229267!10026-101D8;0.248183!10096-102C6;0.773871!10168-103B6;0.305788!10154-103A1;0.470349!10209-103G2;0.426333!10061-101H7;0.662242!10027-101D9;0.644744!10043-101F7;0.260842!10783-110G9;0.689245!10028-101E1;0.522702!10060-101H6;0.811118!10203-103F5;0.752879!10059-101H5;0.584092!10047-101G2;0.618724!10029-101E2;0.648392!10058-101H4;0.727542!10418-106C4;0.496441!10492-107B6;0.02435!10694-109G1;0.0800429!10797-110I5;0.323508!10057-101H3;0.0633078!10100-102D1;0.468351!10055-101H1;0.557395!10204-103F6;0.608564!10191-103E2;0.887476!10563-108A5;0.247254
|name=8-AGCAGAAGTG,CNhs11673,BestGuess:SCL/HPC7-Scl-ChIP-Seq/Homer(0.696558735184686),T:476.0(13.99%),B:3705.1(8.03%),P:1e-31
|name=8-AGCAGAAGTG,CNhs11673,BestGuess:SCL/HPC7-Scl-ChIP-Seq/Homer(0.696558735184686),T:476.0(13.99%),B:3705.1(8.03%),P:1e-31
|tomtom_result=CUP2#MA0287.1;1;0.000125705;0.0598354;0.119671;10;AGCAGAAGTG;CAGCAAAAATG;+!GABPA#MA0062.2;0;0.000565106;0.268991;0.268991;10;AGCAGAAGTG;ACCGGAAGAG;+!ELK4#MA0076.1;0;0.00335417;1.59658;0.889981;9;AGCAGAAGTG;ACCGGAAGT;+!GABPA#MA0062.2;-1;0.00373941;1.77996;0.889981;9;AGCAGAAGTG;CCGGAAGTGGC;+!PEND#MA0127.1;1;0.011099;5.28311;1;9;AGCAGAAGTG;AATAAGAAGT;-!ACE2#MA0267.1;0;0.0112478;5.35397;1;7;AGCAGAAGTG;ACCAGCA;+!SWI5#MA0402.1;1;0.0183228;8.72164;1;7;AGCAGAAGTG;AACCAGCA;-
}}
}}

Latest revision as of 14:30, 7 September 2012

Full Name: 8-AGCAGAAGTG,CNhs11673,BestGuess:SCL/HPC7-Scl-ChIP-Seq/Homer(0.696558735184686),T:476.0(13.99%),B:3705.1(8.03%),P:1e-31

Motif matrix
POACGT
1357.021.8960.47696.628
20.476160.412303.68811.424
30.476440.77634.2720.476
4474.5720.4760.4760.476
573.7835.224364.6162.38
6274.176200.8720.4760.476
7444.1080.4760.47630.94
811.912.376451.2480.476
9128.0440.4760.476347.004
1025.704111.86293.21645.22

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CUP2#MA0287.110.0001257050.05983540.11967110AGCAGAAGTGCAGCAAAAATG+
GABPA#MA0062.200.0005651060.2689910.26899110AGCAGAAGTGACCGGAAGAG+
ELK4#MA0076.100.003354171.596580.8899819AGCAGAAGTGACCGGAAGT+
GABPA#MA0062.2-10.003739411.779960.8899819AGCAGAAGTGCCGGAAGTGGC+
PEND#MA0127.110.0110995.2831119AGCAGAAGTGAATAAGAAGT-
ACE2#MA0267.100.01124785.3539717AGCAGAAGTGACCAGCA+
SWI5#MA0402.110.01832288.7216417AGCAGAAGTGAACCAGCA-
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