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MacroAPE 1083:1-CSGATGAAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;60.06;310.464;72.534;18.942!2;10.626;171.864;193.578;85.932!3;36.498;17.556;395.472;12.474!4;379.302;63.756;18.48;0.462!5;3.234;31.878;79.00...")
 
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452458!10597-108E3;0.384084!10717-109I6;0.459922!10455-106G5;0.772587!10534-107G3;0.0810329!10429-106D6;0.0429861!10464-106H5;0.140033!10827-111C8;0.424925!10789-110H6;0.252698!10828-111C9;0.0329741!10788-110H5;0.230035!10792-110H9;0.181658!10765-110E9;0.0576258!10829-111D1;0.0896211!10830-111D2;0.150834!10831-111D3;0.0937843!10832-111D4;0.18391!10833-111D5;0.0782899!10764-110E8;0.0980831!10770-110F5;0.136123!10399-106A3;0.0981395!10400-106A4;0.181908!10405-106A9;0.131032!10834-111D6;0.120832!10835-111D7;0.262242!10836-111D8;0.745196!10837-111D9;0.0522595!10699-109G6;0.423817!10802-111A1;0.01078!10796-110I4;0.0326659!10010-101C1;0.914885!10810-111A9;0.74788!10421-106C7;0.711452!10708-109H6;0.354806!12235-129G3;0.163459!12236-129G4;0.518686!12237-129G5;0.330384!10167-103B5;0.772159!10151-102I7;0.695839!10428-106D5;0.786242!10795-110I3;0.951199!10805-111A4;0.595876!10052-101G7;0.531756!10189-103D9;0.342207!10589-108D4;0.1502!10425-106D2;0.0806093!10427-106D4;0.654272!10702-109G9;0.045552!10432-106D9;0.0312184!10496-107C1;0.940565!10718-109I7;0.994662!10011-101C2;0.0476433!10053-101G8;0.377677!10686-109F2;0.0922714!10084-102B3;0.313983!10012-101C3;0.636238!10085-102B4;0.69567!10482-107A5;0.970107!10419-106C5;0.924585!10080-102A8;0.933033!10760-110E4;0.511442!10709-109H7;0.674318!10710-109H8;0.357567!10703-109H1;0.906571!10719-109I8;0.309919!10642-109A3;0.685968!10177-103C6;0.266114!10164-103B2;0.760756!10173-103C2;0.748008!10166-103B4;0.717002!10083-102B2;0.76795!10188-103D8;0.926026!10552-107I3;0.57055!10553-107I4;0.769158!10013-101C4;0.47606!10536-107G5;0.73733!10618-108G6;0.367893!10423-106C9;0.448191!10785-110H2;0.684914!12238-129G6;0.79371!12239-129G7;0.931363!12240-129G8;0.0311869!10416-106C2;0.978196!10801-110I9;0.240002!10766-110F1;0.0877604!10824-111C5;0.0523766!10825-111C6;0.591631!10826-111C7;0.673316!10454-106G4;0.705305!10409-106B4;0.537549!10638-108I8;0.026215!10636-108I6;0.721346!10513-107D9;0.442513!10420-106C6;0.857972!10082-102B1;0.21165!10014-101C5;0.897813!10070-101I7;0.686726!10452-106G2;0.751458!10453-106G3;0.463828!10449-106F8;0.70871!10042-101F6;0.730572!10069-101I6;0.803564!10193-103E4;0.556885!10631-108I1;0.751793!10438-106E6;0.0315887!10488-107B2;0.192271!10196-103E7;0.780615!10071-101I8;0.914075!10071-101I8;0.66556!10041-101F5;0.846767!10451-106G1;0.923838!10450-106F9;0.453078!10604-108F1;0.793254!10605-108F2;0.746252!10606-108F3;0.222581!10603-108E9;0.696266!10497-107C2;0.828409!10448-106F7;0.831903!10643-109A4;0.561157!10426-106D3;0.701071!10431-106D8;0.473632!10197-103E8;0.724433!10443-106F2;0.877203!10815-111B5;0.196865!10816-111B6;0.947974!10817-111B7;0.853747!10015-101C6;0.927621!10410-106B5;0.83662!10054-101G9;0.75117!10758-110E2;0.939903!10711-109H9;0.0293028!10040-101F4;0.328504!10470-106I2;0.854371!10415-106C1;0.499812!10198-103E9;0.377593!10614-108G2;0.835392!10612-108F9;0.725156!10549-107H9;0.73025!10615-108G3;0.5787!10487-107B1;0.0726433!10433-106E1;0.655519!10688-109F4;0.400942!10444-106F3;0.365402!10444-106F3;0.264352!10485-107A8;0.253334!10413-106B8;0.854558!10175-103C4;0.846322!10161-103A8;0.641288!12131-128D7;0.746488!10624-108H3;0.0125293!10712-109I1;0.966486!10205-103F7;0.0581883!10206-103F8;0.0903493!10207-103F9;0.0920233!10050-101G5;0.0739573!10051-101G6;0.0195373!10016-101C7;0.0631615!10046-101G1;0.0316624!10778-110G4;0.197334!10633-108I3;0.258509!10818-111B8;0.351193!10819-111B9;0.588151!10820-111C1;0.606654!10484-107A7;0.563793!10808-111A7;0.438969!10169-103B7;0.234699!10153-102I9;0.684069!13425-144D5;0.860058!13433-144E4;0.835127!13437-144E8;0.609504!11904-125F5;0.756242!11905-125F6;0.109133!10039-101F3;0.251388!10791-110H8;0.833091!10017-101C8;0.458224!10045-101F9;0.780766!10509-107D5;0.724562!10839-111E2;0.331248!10692-109F8;0.839333!10079-102A7;0.797369!10078-102A6;0.0961221!10721-110A1;0.0518675!10569-108B2;0.233338!10570-108B3;0.0774729!10571-108B4;0.0428067!10647-109A8;0.0573713!10752-110D5;0.680451!10782-110G8;0.363316!10726-110A6;0.0465454!10018-101C9;0.251287!10086-102B5;0.939824!10182-103D2;0.212531!10165-103B3;0.382828!10499-107C4;0.385501!10408-106B3;0.925567!10019-101D1;0.332687!10068-101I5;0.634055!10075-102A3;0.560567!10077-102A5;0.469581!10727-110A7;0.276873!10775-110G1;0.415202!10412-106B7;0.530125!12231-129F8;0.430267!12232-129F9;0.876044!12233-129G1;0.937824!12234-129G2;0.996125!10414-106B9;0.852952!10170-103B8;0.325762!10183-103D3;0.633684!10150-102I6;0.673686!10174-103C3;0.83388!10155-103A2;0.252106!10038-101F2;0.753128!10838-111E1;0.443082!10759-110E3;0.299875!10514-107E1;0.374868!10465-106H6;0.990939!10691-109F7;0.963979!10843-111E6;0.189675!10844-111E7;0.0845251!11747-123G1;0.36662!11748-123G2;0.68789!11749-123G3;0.336067!11750-123G4;0.406312!11751-123G5;0.29119!11840-124H4;0.144363!11752-123G6;0.857875!11753-123G7;0.0417093!11754-123G8;0.130382!11755-123G9;0.243745!11756-123H1;0.11955!11833-124G6;0.0572038!11760-123H5;0.45376!11836-124G9;0.269856!11758-123H3;0.434187!11835-124G8;0.161074!11762-123H7;0.384041!11838-124H2;0.0430718!11757-123H2;0.0245694!11759-123H4;0.136787!11761-123H6;0.89515!11842-124H6;0.0461684!11837-124H1;0.427584!10568-108B1;0.235143!13230-141I8;0.400155!13231-141I9;0.00744486!10696-109G3;0.0325805!10493-107B7;0.847292!10494-107B8;0.166594!10850-111F4;0.204169!10851-111F5;0.0144606!10852-111F6;0.22217!10853-111F7;0.025216!10854-111F8;0.512854!10855-111F9;0.0772832!10856-111G1;0.466709!10847-111F1;0.0616431!10846-111E9;0.0430032!10848-111F2;0.243743!10845-111E8;0.114261!10857-111G2;0.977282!10858-111G3;0.87462!10156-103A3;0.257354!11901-125F2;0.869112!11902-125F3;0.0527438!11903-125F4;0.0986246!10689-109F5;0.0257411!10648-109A9;0.965559!10784-110H1;0.910512!10744-110C6;0.465767!10772-110F7;0.0690658!10474-106I6;0.145114!10600-108E6;0.0165566!10684-109E9;0.934934!12226-129F3;0.714715!12227-129F4;0.687519!10508-107D4;0.742403!10539-107G8;0.381729!10607-108F4;0.528565!10555-107I6;0.433776!10774-110F9;0.591285!10637-108I7;0.434607!10663-109C6;0.766025!10728-110A8;0.484537!10729-110A9;0.315177!10430-106D7;0.137852!10730-110B1;0.101783!10813-111B3;0.78503!10812-111B2;0.120857!10037-101F1;0.125323!10172-103C1;0.699066!10163-103B1;0.862678!10076-102A4;0.99018!10073-102A1;0.718709!10036-101E9;0.89576!10195-103E6;0.801946!10277-104E7;0.645587!10434-106E2;0.18156!10550-107I1;0.712619!10545-107H5;0.304022!10544-107H4;0.548388!10704-109H2;0.715165!10510-107D6;0.283419!10558-107I9;0.536639!10020-101D2;0.970468!10732-110B3;0.904931!10049-101G4;0.719655!10698-109G5;0.963021!10437-106E5;0.489277!10417-106C3;0.00893007!10035-101E8;0.976452!10171-103B9;0.721688!10157-103A4;0.790502!10034-101E7;0.872627!10072-101I9;0.770763!10199-103F1;0.903897!10200-103F2;0.996272!10697-109G4;0.401663!10723-110A3;0.396821!10179-103C8;0.483243!10160-103A7;0.690166!10180-103C9;0.999624!10162-103A9;0.997694!10021-101D3;0.846448!10840-111E3;0.753027!10706-109H4;0.0396377!10033-101E6;0.279848!10032-101E5;0.817513!10490-107B4;0.785971!10439-106E7;0.962783!10022-101D4;0.649812!10176-103C5;0.357315!10469-106I1;0.607529!10067-101I4;0.804259!10411-106B6;0.527419!10471-106I3;0.718266!10030-101E3;0.30715!10475-106I7;0.879865!10787-110H4;0.169417!10477-106I9;0.279989!10695-109G2;0.327833!11771-123I7;0.323661!11772-123I8;0.683029!11773-123I9;0.569206!10093-102C3;0.470687!10442-106F1;0.881968!10442-106F1;0.237319!10201-103F3;0.339756!10639-108I9;0.507254!11843-124H7;0.164136!11841-124H5;0.44086!10693-109F9;0.677634!10436-106E4;0.41867!10483-107A6;0.701525!10282-104F3;0.908293!10023-101D5;0.945842!10066-101I3;0.570163!10065-101I2;0.95444!10800-110I8;0.907558!10610-108F7;0.280477!10841-111E4;0.245343!10541-107H1;0.326163!10842-111E5;0.469428!10562-108A4;0.406121!10024-101D6;0.635727!10064-101I1;0.563134!10609-108F6;0.912657!10048-101G3;0.586359!10781-110G7;0.246889!10181-103D1;0.341348!10159-103A6;0.20967!10056-101H2;0.432794!10737-110B8;0.410937!10025-101D7;0.0332546!10044-101F8;0.483757!10424-106D1;0.516432!10463-106H4;0.109927!10616-108G4;0.526649!10486-107A9;0.462805!10062-101H8;0.886103!10202-103F4;0.777497!10158-103A5;0.192088!10441-106E9;0.722519!10031-101E4;0.824235!10063-101H9;0.762501!10063-101H9;0.854479!11763-123H8;0.417134!11765-123I1;0.0846197!11768-123I4;0.157364!10807-111A6;0.0206445!10790-110H7;0.808888!10798-110I6;0.384353!10786-110H3;0.618359!10591-108D6;0.936793!10593-108D8;0.718272!10590-108D5;0.827579!10026-101D8;0.403024!10096-102C6;0.902512!10168-103B6;0.912784!10154-103A1;0.618841!10209-103G2;0.97202!10061-101H7;0.979159!10027-101D9;0.763566!10043-101F7;0.00750712!10783-110G9;0.0126642!10028-101E1;0.859426!10060-101H6;0.965746!10203-103F5;0.827329!10059-101H5;0.849106!10047-101G2;0.851667!10029-101E2;0.0104317!10058-101H4;0.969074!10418-106C4;0.262831!10492-107B6;0.944975!10694-109G1;0.74202!10797-110I5;0.452479!10057-101H3;0.812188!10100-102D1;0.0754788!10055-101H1;0.526154!10204-103F6;0.732175!10191-103E2;0.454812!10563-108A5;0.700746
|name=1-CSGATGAAT,CNhs12011,BestGuess:Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer(0.678135376239164),T:462.0(37.62%),B:11082.2(23.47%),P:1e-27
|name=1-CSGATGAAT,CNhs12011,BestGuess:Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer(0.678135376239164),T:462.0(37.62%),B:11082.2(23.47%),P:1e-27
|tomtom_result=TEAD1#MA0090.1;0;0.00151999;0.723516;0.526329;9;CGGATGAAT;CGGAGGAATGTG;-!EDS1#MA0294.1;0;0.00159634;0.759856;0.526329;9;CGGATGAAT;CGGAAAAAT;+!sd#MA0243.1;0;0.00238508;1.1353;0.526329;9;CGGATGAAT;CCGAGGAATGTC;-!RGT1#MA0367.1;1;0.00268155;1.27642;0.526329;9;CGGATGAAT;CCGGAAAAACT;-!YPR196W#MA0437.1;0;0.00276503;1.31616;0.526329;9;CGGATGAAT;CGGAGAAAT;-!Ptx1#MA0201.1;-1;0.00983484;4.68138;0.999747;7;CGGATGAAT;GGATTAA;-!Pax6#MA0069.1;4;0.0127248;6.05698;0.999747;9;CGGATGAAT;TTCACGCATGAGTT;+!GLN3#MA0307.1;-2;0.017034;8.1082;0.999747;5;CGGATGAAT;GATAA;+!GATA2#MA0036.1;-1;0.0206484;9.82863;0.999747;5;CGGATGAAT;GGATA;+
}}
}}

Latest revision as of 14:34, 7 September 2012

Full Name: 1-CSGATGAAT,CNhs12011,BestGuess:Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq/Homer(0.678135376239164),T:462.0(37.62%),B:11082.2(23.47%),P:1e-27

Motif matrix
POACGT
160.06310.46472.53418.942
210.626171.864193.57885.932
336.49817.556395.47212.474
4379.30263.75618.480.462
53.23431.87879.002347.886
663.75624.948261.03112.266
7384.8460.46226.79649.896
8281.8297.94434.6547.586
954.5160.46220.328386.694

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TEAD1#MA0090.100.001519990.7235160.5263299CGGATGAATCGGAGGAATGTG-
EDS1#MA0294.100.001596340.7598560.5263299CGGATGAATCGGAAAAAT+
sd#MA0243.100.002385081.13530.5263299CGGATGAATCCGAGGAATGTC-
RGT1#MA0367.110.002681551.276420.5263299CGGATGAATCCGGAAAAACT-
YPR196W#MA0437.100.002765031.316160.5263299CGGATGAATCGGAGAAAT-
Ptx1#MA0201.1-10.009834844.681380.9997477CGGATGAATGGATTAA-
Pax6#MA0069.140.01272486.056980.9997479CGGATGAATTTCACGCATGAGTT+
GLN3#MA0307.1-20.0170348.10820.9997475CGGATGAATGATAA+
GATA2#MA0036.1-10.02064849.828630.9997475CGGATGAATGGATA+
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