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MacroAPE 1083:6-CTTCCTGTCAGAG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;43.616;1257.344;81.216;121.824!2;66.176;103.776;64.672;1269.376!3;21.056;78.208;97.76;1306.976!4;43.616;1335.552;81.216;43.616!5;43.616;1331...")
 
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69467!11441-118I1;0.0392977!10007-101B4;8.49165e-05!11520-119H8;0.050219!11600-120H7;0.100964!11681-122H7;0.0945553!11216-116B1;0.0463929!12179-129A1;0.109428!12180-129A2;8.56894e-05!12181-129A3;5.07814e-05!12176-128I7;7.84909e-07!12177-128I8;4.69747e-07!12182-129A4;1.60398e-06!12183-129A5;1.85859e-05!12184-129A6;1.35203e-05!10809-111A8;6.44975e-06!10597-108E3;0.00114082!10717-109I6;1.6274e-05!10455-106G5;0.000373275!10534-107G3;0.803037!10429-106D6;0.0642697!10464-106H5;0.4778!10827-111C8;0.513278!10789-110H6;0.182867!10828-111C9;0.0213649!10788-110H5;0.0132441!10792-110H9;0.91426!10765-110E9;0.00807618!10829-111D1;0.00243734!10830-111D2;0.68848!10831-111D3;0.00217628!10832-111D4;0.364979!10833-111D5;0.17062!10764-110E8;0.263283!10770-110F5;0.105685!10399-106A3;0.0902498!10400-106A4;0.533281!10405-106A9;0.792993!10834-111D6;0.753359!10835-111D7;0.0437637!10836-111D8;0.165061!10837-111D9;0.887558!10699-109G6;0.784202!10802-111A1;0.0214725!10796-110I4;0.633654!10010-101C1;0.000906803!10810-111A9;0.00307346!10421-106C7;0.000499651!10708-109H6;0.0283743!12235-129G3;9.4808e-06!12236-129G4;0.346128!12237-129G5;0.608528!10167-103B5;0.445455!10151-102I7;0.856407!10428-106D5;0.560978!10795-110I3;0.372819!10805-111A4;0.520892!10052-101G7;3.21351e-05!10189-103D9;0.00344957!10589-108D4;7.21785e-06!10425-106D2;0.000723923!10427-106D4;0.563161!10702-109G9;0.0903988!10432-106D9;0.55542!10496-107C1;0.00152392!10718-109I7;0.0034716!10011-101C2;0.416658!10053-101G8;0.00536502!10686-109F2;4.11626e-05!10084-102B3;0.283817!10012-101C3;0.947398!10085-102B4;0.660925!10482-107A5;0.849404!10419-106C5;8.29587e-05!10080-102A8;0.00829379!10760-110E4;0.093144!10709-109H7;0.00049535!10710-109H8;0.00240453!10703-109H1;1.63814e-05!10719-109I8;0.00358179!10642-109A3;0.0240641!10177-103C6;0.00217166!10164-103B2;0.922681!10173-103C2;0.815893!10166-103B4;0.968186!10083-102B2;0.794379!10188-103D8;0.701339!10552-107I3;0.780958!10553-107I4;3.69061e-05!10013-101C4;0.0401402!10536-107G5;0.000823124!10618-108G6;0.0126042!10423-106C9;0.0265195!10785-110H2;8.7216e-05!12238-129G6;0.00156156!12239-129G7;0.622501!12240-129G8;0.54742!10416-106C2;0.593884!10801-110I9;0.180946!10766-110F1;0.120265!10824-111C5;0.723649!10825-111C6;0.00480786!10826-111C7;0.00633679!10454-106G4;0.0201248!10409-106B4;0.0260388!10638-108I8;0.705075!10636-108I6;8.64889e-06!10513-107D9;4.69112e-06!10420-106C6;7.27954e-07!10082-102B1;0.0237737!10014-101C5;0.200245!10070-101I7;0.0109224!10452-106G2;0.0188757!10453-106G3;0.936766!10449-106F8;0.70658!10042-101F6;0.660584!10069-101I6;0.308413!10193-103E4;0.0832903!10631-108I1;0.96212!10438-106E6;0.878273!10488-107B2;0.00235733!10196-103E7;0.000704219!10071-101I8;0.608323!10071-101I8;0.012653!10041-101F5;0.857964!10451-106G1;3.64333e-06!10450-106F9;0.000234175!10604-108F1;8.24738e-06!10605-108F2;0.0013864!10606-108F3;6.95404e-05!10603-108E9;0.00292444!10497-107C2;0.000484109!10448-106F7;0.0208224!10643-109A4;0.0947668!10426-106D3;3.50273e-05!10431-106D8;0.00201161!10197-103E8;0.00617927!10443-106F2;0.377378!10815-111B5;0.0212279!10816-111B6;4.4856e-06!10817-111B7;1.13182e-05!10015-101C6;8.179e-06!10410-106B5;0.0574667!10054-101G9;0.0127646!10758-110E2;0.282479!10711-109H9;0.335246!10040-101F4;0.200982!10470-106I2;0.65025!10415-106C1;0.00329237!10198-103E9;0.0178784!10614-108G2;0.0261203!10612-108F9;6.47106e-05!10549-107H9;0.000206382!10615-108G3;0.000302429!10487-107B1;0.0136926!10433-106E1;5.66449e-05!10688-109F4;0.207399!10444-106F3;0.00684963!10444-106F3;0.757107!10485-107A8;0.734796!10413-106B8;0.0492411!10175-103C4;0.124661!10161-103A8;0.994053!12131-128D7;0.324437!10624-108H3;0.00286759!10712-109I1;0.00590858!10205-103F7;0.474812!10206-103F8;0.0274571!10207-103F9;0.0316899!10050-101G5;0.0414979!10051-101G6;0.846179!10016-101C7;0.131611!10046-101G1;0.0490052!10778-110G4;0.0389123!10633-108I3;0.96287!10818-111B8;0.000164344!10819-111B9;3.48847e-05!10820-111C1;5.17109e-05!10484-107A7;4.95442e-05!10808-111A7;0.00211575!10169-103B7;0.854164!10153-102I9;0.736532!13425-144D5;0.481103!13433-144E4;2.60699e-05!13437-144E8;0.000215581!11904-125F5;0.00019718!11905-125F6;0.0362043!10039-101F3;0.25091!10791-110H8;0.721034!10017-101C8;0.000393694!10045-101F9;0.222013!10509-107D5;0.435568!10839-111E2;0.00947686!10692-109F8;0.000417074!10079-102A7;0.00772141!10078-102A6;0.0141477!10721-110A1;0.0783015!10569-108B2;9.32716e-07!10570-108B3;0.217313!10571-108B4;0.942288!10647-109A8;0.877861!10752-110D5;0.207524!10782-110G8;0.267991!10726-110A6;0.482097!10018-101C9;0.00130548!10086-102B5;0.483525!10182-103D2;0.642656!10165-103B3;0.691743!10499-107C4;0.565408!10408-106B3;0.00216566!10019-101D1;0.0408442!10068-101I5;4.66367e-05!10075-102A3;0.00505456!10077-102A5;3.58271e-05!10727-110A7;1.94628e-07!10775-110G1;0.976781!10412-106B7;0.337378!12231-129F8;0.193432!12232-129F9;0.270411!12233-129G1;0.0805502!12234-129G2;0.136522!10414-106B9;0.321178!10170-103B8;0.0167459!10183-103D3;0.798365!10150-102I6;0.838744!10174-103C3;0.576306!10155-103A2;0.352166!10038-101F2;0.267821!10838-111E1;0.265266!10759-110E3;0.0108541!10514-107E1;0.111605!10465-106H6;0.00633024!10691-109F7;0.000236832!10843-111E6;0.0315936!10844-111E7;0.0707859!11747-123G1;0.216755!11748-123G2;0.339082!11749-123G3;0.170534!11750-123G4;0.379654!11751-123G5;0.306557!11840-124H4;0.947957!11752-123G6;0.889439!11753-123G7;0.1004!11754-123G8;0.326736!11755-123G9;0.137537!11756-123H1;0.0365885!11833-124G6;0.210734!11760-123H5;0.242278!11836-124G9;0.16085!11758-123H3;0.435938!11835-124G8;0.339003!11762-123H7;0.336153!11838-124H2;0.161749!11757-123H2;0.269229!11759-123H4;0.139754!11761-123H6;0.279858!11842-124H6;0.0603337!11837-124H1;0.0380918!10568-108B1;0.606349!13230-141I8;0.81151!13231-141I9;0.781795!10696-109G3;0.984389!10493-107B7;0.506572!10494-107B8;0.014601!10850-111F4;0.0778476!10851-111F5;0.0927939!10852-111F6;0.442078!10853-111F7;0.617214!10854-111F8;0.000318911!10855-111F9;0.211828!10856-111G1;0.0707461!10847-111F1;0.0631824!10846-111E9;0.230607!10848-111F2;0.0112196!10845-111E8;0.00621289!10857-111G2;0.00800315!10858-111G3;1.84074e-05!10156-103A3;0.00107346!11901-125F2;0.600713!11902-125F3;0.48438!11903-125F4;0.720522!10689-109F5;0.548154!10648-109A9;0.00302991!10784-110H1;2.93551e-05!10744-110C6;0.0203727!10772-110F7;0.11003!10474-106I6;0.261589!10600-108E6;0.159627!10684-109E9;0.493044!12226-129F3;0.0378455!12227-129F4;0.000231494!10508-107D4;0.452497!10539-107G8;0.0512697!10607-108F4;0.064191!10555-107I6;0.000124102!10774-110F9;0.0371069!10637-108I7;0.00352632!10663-109C6;0.0652726!10728-110A8;0.0866766!10729-110A9;0.00265934!10430-106D7;0.655059!10730-110B1;0.549868!10813-111B3;0.0407116!10812-111B2;0.496803!10037-101F1;0.249865!10172-103C1;0.706095!10163-103B1;0.955185!10076-102A4;0.495552!10073-102A1;0.971768!10036-101E9;0.977539!10195-103E6;0.969815!10277-104E7;0.720525!10434-106E2;0.33049!10550-107I1;0.00314463!10545-107H5;6.80492e-05!10544-107H4;0.0275165!10704-109H2;0.0026583!10510-107D6;0.381867!10558-107I9;0.124251!10020-101D2;0.00749043!10732-110B3;0.224467!10049-101G4;0.345274!10698-109G5;0.0923667!10437-106E5;0.00275252!10417-106C3;0.000627051!10035-101E8;0.0109732!10171-103B9;0.873947!10157-103A4;0.919256!10034-101E7;0.57262!10072-101I9;0.831439!10199-103F1;0.90019!10200-103F2;0.0575088!10697-109G4;0.0206494!10723-110A3;0.0557175!10179-103C8;0.00520764!10160-103A7;0.759699!10180-103C9;0.442015!10162-103A9;0.846975!10021-101D3;0.510409!10840-111E3;0.00386799!10706-109H4;0.69095!10033-101E6;0.740796!10032-101E5;0.63689!10490-107B4;0.928181!10439-106E7;2.02462e-06!10022-101D4;3.03311e-05!10176-103C5;0.00895528!10469-106I1;0.943172!10067-101I4;4.87994e-06!10411-106B6;0.0585568!10471-106I3;0.0627202!10030-101E3;0.00728415!10475-106I7;0.0958246!10787-110H4;0.0260167!10477-106I9;0.000714759!10695-109G2;0.306593!11771-123I7;0.917891!11772-123I8;0.0245435!11773-123I9;0.0587031!10093-102C3;0.379181!10442-106F1;0.163605!10442-106F1;0.364139!10201-103F3;0.480523!10639-108I9;0.21144!11843-124H7;0.000754182!11841-124H5;2.64797e-07!10693-109F9;1.93802e-06!10436-106E4;8.97762e-09!10483-107A6;0.00191466!10282-104F3;0.00121686!10023-101D5;0.355882!10066-101I3;0.204839!10065-101I2;0.204759!10800-110I8;0.101967!10610-108F7;0.0083426!10841-111E4;0.0420623!10541-107H1;0.000741364!10842-111E5;0.000236745!10562-108A4;0.0259558!10024-101D6;0.0506441!10064-101I1;0.0100762!10609-108F6;0.0419254!10048-101G3;0.0480492!10781-110G7;0.021299!10181-103D1;0.0303376!10159-103A6;0.228298!10056-101H2;0.0366884!10737-110B8;0.279178!10025-101D7;0.494628!10044-101F8;4.30118e-05!10424-106D1;8.87838e-05!10463-106H4;0.653546!10616-108G4;0.00937123!10486-107A9;0.305668!10062-101H8;0.00174025!10202-103F4;0.217667!10158-103A5;0.0168577!10441-106E9;0.1462!10031-101E4;0.0019633!10063-101H9;0.865293!10063-101H9;0.942733!11763-123H8;0.00927962!11765-123I1;0.606555!11768-123I4;0.550676!10807-111A6;0.294443!10790-110H7;0.000895761!10798-110I6;0.0100451!10786-110H3;0.000310789!10591-108D6;0.000658265!10593-108D8;0.00302371!10590-108D5;0.00250882!10026-101D8;0.00036779!10096-102C6;0.915911!10168-103B6;0.0659743!10154-103A1;0.724071!10209-103G2;0.353896!10061-101H7;0.0995894!10027-101D9;0.0697774!10043-101F7;4.08181e-11!10783-110G9;7.28944e-15!10028-101E1;0.00217537!10060-101H6;0.769447!10203-103F5;0.307725!10059-101H5;0.277078!10047-101G2;0.735229!10029-101E2;0.000186513!10058-101H4;0.0339662!10418-106C4;0.058251!10492-107B6;0.10077!10694-109G1;0.00587668!10797-110I5;0.39937!10057-101H3;1.27032e-06!10100-102D1;0.310142!10055-101H1;0.000817765!10204-103F6;0.149678!10191-103E2;0.011393!10563-108A5;3.53324e-05
|name=6-CTTCCTGTCAGAG,CNhs11673,BestGuess:Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer(0.742504427802236),T:1504.0(44.21%),B:16183.8(35.07%),P:1e-27
|name=6-CTTCCTGTCAGAG,CNhs11673,BestGuess:Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer(0.742504427802236),T:1504.0(44.21%),B:16183.8(35.07%),P:1e-27
|tomtom_result=achi#MA0207.1;-4;0.000280103;0.133329;0.169384;6;CTTCCTGTCAGAG;CTGTCA;-!hth#MA0227.1;-4;0.000588429;0.280092;0.169384;6;CTTCCTGTCAGAG;CTGTCA;-!vis#MA0252.1;-4;0.000689209;0.328063;0.169384;6;CTTCCTGTCAGAG;CTGTCA;-!Stat3#MA0144.1;0;0.000716419;0.341015;0.169384;10;CTTCCTGTCAGAG;CTTCCTGGAA;-!Eip74EF#MA0026.1;0;0.00099104;0.471735;0.187451;7;CTTCCTGTCAGAG;CTTCCGG;-!FEV#MA0156.1;1;0.00153292;0.729669;0.223367;7;CTTCCTGTCAGAG;ATTTCCTG;-!SPIB#MA0081.1;-1;0.00183164;0.871859;0.223367;7;CTTCCTGTCAGAG;TTCCTCT;-!SPI1#MA0080.2;1;0.00201171;0.957575;0.223367;6;CTTCCTGTCAGAG;ACTTCCT;-!TOS8#MA0408.1;-4;0.00212567;1.01182;0.223367;8;CTTCCTGTCAGAG;CTGTCAAA;+!SPI1#MA0080.2;0;0.00430709;2.05018;0.403509;6;CTTCCTGTCAGAG;CTTCCG;-!ELK4#MA0076.1;1;0.00469331;2.23402;0.403509;8;CTTCCTGTCAGAG;ACTTCCGGT;-!ETS1#MA0098.1;0;0.00737926;3.51253;0.525375;6;CTTCCTGTCAGAG;CTTCCG;+!GABPA#MA0062.1;2;0.0076195;3.62688;0.525375;8;CTTCCTGTCAGAG;CTCTTCCGGT;-!GCR2#MA0305.1;1;0.00777734;3.70201;0.525375;6;CTTCCTGTCAGAG;GCTTCCT;+!STAT1#MA0137.2;2;0.00895117;4.26076;0.564358;13;CTTCCTGTCAGAG;GGTTTCCGGGAAATG;-!RME1#MA0370.1;-1;0.0102135;4.86161;0.568187;10;CTTCCTGTCAGAG;TTCCTTTGGA;-!exd#MA0222.1;-5;0.0117956;5.61472;0.596511;8;CTTCCTGTCAGAG;TGTCAAAA;-!ELK1#MA0028.1;0;0.0119841;5.70443;0.596511;10;CTTCCTGTCAGAG;CTTCCGGCTC;-
}}
}}

Latest revision as of 14:47, 7 September 2012

Full Name: 6-CTTCCTGTCAGAG,CNhs11673,BestGuess:Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer(0.742504427802236),T:1504.0(44.21%),B:16183.8(35.07%),P:1e-27

Motif matrix
POACGT
143.6161257.34481.216121.824
266.176103.77664.6721269.376
321.05678.20897.761306.976
443.6161335.55281.21643.616
543.6161331.0421.056108.288
6100.76864.67243.6161294.944
764.672165.441194.17679.712
875.269.18497.761261.856
960.161230.272148.89664.672
101308.4875.21.504118.816
1187.232132.3521263.3621.056
121254.33664.672109.79275.2
1360.1643.6161248.32151.904

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
achi#MA0207.1-40.0002801030.1333290.1693846CTTCCTGTCAGAGCTGTCA-
hth#MA0227.1-40.0005884290.2800920.1693846CTTCCTGTCAGAGCTGTCA-
vis#MA0252.1-40.0006892090.3280630.1693846CTTCCTGTCAGAGCTGTCA-
Stat3#MA0144.100.0007164190.3410150.16938410CTTCCTGTCAGAGCTTCCTGGAA-
Eip74EF#MA0026.100.000991040.4717350.1874517CTTCCTGTCAGAGCTTCCGG-
FEV#MA0156.110.001532920.7296690.2233677CTTCCTGTCAGAGATTTCCTG-
SPIB#MA0081.1-10.001831640.8718590.2233677CTTCCTGTCAGAGTTCCTCT-
SPI1#MA0080.210.002011710.9575750.2233676CTTCCTGTCAGAGACTTCCT-
TOS8#MA0408.1-40.002125671.011820.2233678CTTCCTGTCAGAGCTGTCAAA+
SPI1#MA0080.200.004307092.050180.4035096CTTCCTGTCAGAGCTTCCG-
ELK4#MA0076.110.004693312.234020.4035098CTTCCTGTCAGAGACTTCCGGT-
ETS1#MA0098.100.007379263.512530.5253756CTTCCTGTCAGAGCTTCCG+
GABPA#MA0062.120.00761953.626880.5253758CTTCCTGTCAGAGCTCTTCCGGT-
GCR2#MA0305.110.007777343.702010.5253756CTTCCTGTCAGAGGCTTCCT+
STAT1#MA0137.220.008951174.260760.56435813CTTCCTGTCAGAGGGTTTCCGGGAAATG-
RME1#MA0370.1-10.01021354.861610.56818710CTTCCTGTCAGAGTTCCTTTGGA-
exd#MA0222.1-50.01179565.614720.5965118CTTCCTGTCAGAGTGTCAAAA-
ELK1#MA0028.100.01198415.704430.59651110CTTCCTGTCAGAGCTTCCGGCTC-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:6-CTTCCTGTCAGAG&oldid=2134488"