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MacroAPE 1083:5-GCTTSYTGTTTW: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.393;1.048;129.428;0.131!2;19.781;106.503;3.144;1.572!3;39.824;27.379;1.048;62.618!4;50.042;1.048;5.109;74.801!5;23.449;41.527;51.745;14.27...")
 
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0827-111C8;0.732692!10789-110H6;0.410102!10828-111C9;0.203003!10788-110H5;0.884908!10792-110H9;0.564531!10765-110E9;0.955945!10829-111D1;0.896928!10830-111D2;0.641151!10831-111D3;0.336209!10832-111D4;0.547368!10833-111D5;0.592478!10764-110E8;0.780272!10770-110F5;0.824969!10399-106A3;0.470478!10400-106A4;0.8271!10405-106A9;0.949171!10834-111D6;0.944189!10835-111D7;0.865166!10836-111D8;0.128034!10837-111D9;0.972178!10699-109G6;0.198307!10802-111A1;0.969996!10796-110I4;0.525483!10010-101C1;0.00388196!10810-111A9;0.280541!10421-106C7;0.0631403!10708-109H6;0.631678!12235-129G3;0.0704743!12236-129G4;0.939454!12237-129G5;0.577874!10167-103B5;0.899213!10151-102I7;0.229579!10428-106D5;0.125202!10795-110I3;0.166746!10805-111A4;0.921683!10052-101G7;0.0290885!10189-103D9;0.1607!10589-108D4;0.0151212!10425-106D2;0.0336216!10427-106D4;0.95822!10702-109G9;0.723185!10432-106D9;0.462243!10496-107C1;0.00203939!10718-109I7;0.0208244!10011-101C2;0.939791!10053-101G8;0.241404!10686-109F2;0.0675221!10084-102B3;0.482896!10012-101C3;0.230993!10085-102B4;0.180062!10482-107A5;0.716186!10419-106C5;0.0103066!10080-102A8;0.055887!10760-110E4;0.835508!10709-109H7;0.0554534!10710-109H8;0.0162672!10703-109H1;0.046459!10719-109I8;0.215818!10642-109A3;0.523294!10177-103C6;0.145948!10164-103B2;0.374565!10173-103C2;0.224898!10166-103B4;0.970705!10083-102B2;0.825338!10188-103D8;0.656548!10552-107I3;0.201336!10553-107I4;0.0974414!10013-101C4;0.235269!10536-107G5;0.601132!10618-108G6;0.36199!10423-106C9;0.105274!10785-110H2;0.0214886!12238-129G6;0.00987435!12239-129G7;0.522092!12240-129G8;0.55535!10416-106C2;0.498494!10801-110I9;0.0676188!10766-110F1;0.568093!10824-111C5;0.42301!10825-111C6;0.641652!10826-111C7;0.517109!10454-106G4;0.736277!10409-106B4;0.74875!10638-108I8;0.574889!10636-108I6;0.565289!10513-107D9;0.0941444!10420-106C6;0.012438!10082-102B1;0.0460024!10014-101C5;0.151705!10070-101I7;0.487209!10452-106G2;0.299155!10453-106G3;0.863581!10449-106F8;0.630966!10042-101F6;0.59047!10069-101I6;0.102251!10193-103E4;0.169173!10631-108I1;0.313895!10438-106E6;0.820081!10488-107B2;0.0682509!10196-103E7;0.0405177!10071-101I8;0.528813!10071-101I8;0.111171!10041-101F5;0.811019!10451-106G1;0.0386954!10450-106F9;0.0977778!10604-108F1;0.167152!10605-108F2;0.0638636!10606-108F3;0.0125773!10603-108E9;0.0297754!10497-107C2;0.0867736!10448-106F7;0.188183!10643-109A4;0.0459778!10426-106D3;0.00172278!10431-106D8;0.0247151!10197-103E8;0.0956737!10443-106F2;0.274562!10815-111B5;0.0239725!10816-111B6;0.00676161!10817-111B7;0.00489465!10015-101C6;0.00770924!10410-106B5;0.0619278!10054-101G9;0.00565261!10758-110E2;0.48449!10711-109H9;0.0125609!10040-101F4;0.298153!10470-106I2;0.24776!10415-106C1;0.0266365!10198-103E9;0.171472!10614-108G2;0.247585!10612-108F9;0.414909!10549-107H9;0.1033!10615-108G3;0.12242!10487-107B1;0.00220784!10433-106E1;0.0683396!10688-109F4;0.000111401!10444-106F3;0.161357!10444-106F3;0.370403!10485-107A8;0.381553!10413-106B8;0.266958!10175-103C4;0.0299655!10161-103A8;0.184522!12131-128D7;0.0890821!10624-108H3;0.82576!10712-109I1;0.0744548!10205-103F7;0.976562!10206-103F8;0.52611!10207-103F9;0.882557!10050-101G5;0.920382!10051-101G6;0.862223!10016-101C7;0.968631!10046-101G1;0.658052!10778-110G4;0.726614!10633-108I3;0.837392!10818-111B8;0.135828!10819-111B9;0.0138726!10820-111C1;0.00993466!10484-107A7;0.0154558!10808-111A7;0.030369!10169-103B7;0.628137!10153-102I9;0.18644!13425-144D5;0.129563!13433-144E4;0.155174!13437-144E8;0.117606!11904-125F5;0.103451!11905-125F6;0.694355!10039-101F3;0.534556!10791-110H8;0.223866!10017-101C8;0.211892!10045-101F9;0.94132!10509-107D5;0.686405!10839-111E2;0.000867909!10692-109F8;0.389584!10079-102A7;0.0876832!10078-102A6;0.606711!10721-110A1;0.741772!10569-108B2;0.0048587!10570-108B3;0.843613!10571-108B4;0.86794!10647-109A8;0.951171!10752-110D5;0.0300077!10782-110G8;0.600131!10726-110A6;0.911917!10018-101C9;0.111371!10086-102B5;0.437553!10182-103D2;0.172816!10165-103B3;0.182583!10499-107C4;0.0991003!10408-106B3;0.0382972!10019-101D1;0.143931!10068-101I5;0.472708!10075-102A3;0.396845!10077-102A5;0.306903!10727-110A7;0.00621751!10775-110G1;0.480533!10412-106B7;0.203517!12231-129F8;0.178321!12232-129F9;0.655607!12233-129G1;0.464743!12234-129G2;0.558115!10414-106B9;0.757512!10170-103B8;0.0900963!10183-103D3;0.371742!10150-102I6;0.273068!10174-103C3;0.158246!10155-103A2;0.106854!10038-101F2;0.136765!10838-111E1;0.0743803!10759-110E3;0.00101021!10514-107E1;0.175496!10465-106H6;0.503304!10691-109F7;0.279636!10843-111E6;0.115268!10844-111E7;0.744651!11747-123G1;0.843156!11748-123G2;0.981952!11749-123G3;0.831706!11750-123G4;0.864316!11751-123G5;0.671863!11840-124H4;0.99678!11752-123G6;0.978971!11753-123G7;0.264925!11754-123G8;0.599757!11755-123G9;0.68279!11756-123H1;0.948422!11833-124G6;0.998343!11760-123H5;0.816165!11836-124G9;0.715575!11758-123H3;0.634124!11835-124G8;0.729479!11762-123H7;0.862374!11838-124H2;0.674214!11757-123H2;0.950704!11759-123H4;0.795207!11761-123H6;0.70672!11842-124H6;0.718611!11837-124H1;0.319311!10568-108B1;0.967284!13230-141I8;0.306062!13231-141I9;0.958553!10696-109G3;0.856062!10493-107B7;0.22583!10494-107B8;0.298752!10850-111F4;0.108303!10851-111F5;0.440216!10852-111F6;0.153579!10853-111F7;0.573487!10854-111F8;0.287779!10855-111F9;0.0202785!10856-111G1;0.939283!10847-111F1;0.556764!10846-111E9;0.0499966!10848-111F2;0.257193!10845-111E8;0.156692!10857-111G2;0.0517474!10858-111G3;0.0184485!10156-103A3;0.314476!11901-125F2;0.172722!11902-125F3;0.463185!11903-125F4;0.46112!10689-109F5;0.512112!10648-109A9;0.232138!10784-110H1;0.86092!10744-110C6;0.0917276!10772-110F7;0.346415!10474-106I6;0.4078!10600-108E6;0.83118!10684-109E9;0.100906!12226-129F3;0.435169!12227-129F4;0.0219523!10508-107D4;0.325827!10539-107G8;0.389145!10607-108F4;0.403663!10555-107I6;0.813393!10774-110F9;0.287148!10637-108I7;0.820672!10663-109C6;0.903573!10728-110A8;0.786177!10729-110A9;0.414257!10430-106D7;0.303486!10730-110B1;0.957493!10813-111B3;0.327422!10812-111B2;0.526769!10037-101F1;0.966658!10172-103C1;0.185909!10163-103B1;0.458622!10076-102A4;0.0662479!10073-102A1;0.238594!10036-101E9;0.866048!10195-103E6;0.241756!10277-104E7;0.204604!10434-106E2;0.342732!10550-107I1;0.210034!10545-107H5;0.172432!10544-107H4;0.171083!10704-109H2;0.0536642!10510-107D6;0.100462!10558-107I9;0.391332!10020-101D2;0.179917!10732-110B3;0.427076!10049-101G4;0.305977!10698-109G5;0.968372!10437-106E5;0.0120492!10417-106C3;0.00781768!10035-101E8;0.000568691!10171-103B9;0.230374!10157-103A4;0.204822!10034-101E7;0.190097!10072-101I9;0.223981!10199-103F1;0.805228!10200-103F2;0.301831!10697-109G4;0.471947!10723-110A3;0.54429!10179-103C8;0.0458612!10160-103A7;0.470725!10180-103C9;0.211983!10162-103A9;0.977158!10021-101D3;0.968438!10840-111E3;0.556902!10706-109H4;0.809167!10033-101E6;0.062984!10032-101E5;0.140175!10490-107B4;0.243296!10439-106E7;0.0187566!10022-101D4;0.0218876!10176-103C5;0.35348!10469-106I1;0.443838!10067-101I4;0.0717699!10411-106B6;0.590256!10471-106I3;0.567732!10030-101E3;0.135187!10475-106I7;0.473919!10787-110H4;0.113347!10477-106I9;0.0097965!10695-109G2;0.81459!11771-123I7;0.970059!11772-123I8;0.000224449!11773-123I9;0.00243766!10093-102C3;0.0540955!10442-106F1;0.271903!10442-106F1;0.259046!10201-103F3;0.368212!10639-108I9;0.573907!11843-124H7;0.190789!11841-124H5;0.0764021!10693-109F9;0.144315!10436-106E4;0.0980835!10483-107A6;0.0230922!10282-104F3;0.00691341!10023-101D5;0.919415!10066-101I3;0.929989!10065-101I2;0.487243!10800-110I8;0.315293!10610-108F7;0.0344294!10841-111E4;0.154514!10541-107H1;0.114028!10842-111E5;0.16862!10562-108A4;0.0264593!10024-101D6;0.0546537!10064-101I1;0.577694!10609-108F6;0.455672!10048-101G3;0.0113933!10781-110G7;0.269935!10181-103D1;0.270081!10159-103A6;0.125617!10056-101H2;0.02189!10737-110B8;0.122698!10025-101D7;0.747387!10044-101F8;0.034405!10424-106D1;0.0172338!10463-106H4;0.75175!10616-108G4;0.197487!10486-107A9;0.0255921!10062-101H8;0.000486418!10202-103F4;0.267679!10158-103A5;0.0760973!10441-106E9;0.0972089!10031-101E4;0.130126!10063-101H9;0.226289!10063-101H9;0.975342!11763-123H8;0.298466!11765-123I1;0.790301!11768-123I4;0.713394!10807-111A6;0.985183!10790-110H7;0.222093!10798-110I6;0.126245!10786-110H3;0.00793469!10591-108D6;0.0808983!10593-108D8;0.138463!10590-108D5;0.0292568!10026-101D8;0.291444!10096-102C6;0.364714!10168-103B6;0.81495!10154-103A1;0.246243!10209-103G2;0.151246!10061-101H7;0.193495!10027-101D9;0.242957!10043-101F7;0.186412!10783-110G9;0.0393619!10028-101E1;0.0635596!10060-101H6;0.441508!10203-103F5;0.391986!10059-101H5;0.421245!10047-101G2;0.549807!10029-101E2;0.0149879!10058-101H4;0.136826!10418-106C4;0.356456!10492-107B6;0.05511!10694-109G1;0.0853707!10797-110I5;0.946514!10057-101H3;0.0104413!10100-102D1;0.460081!10055-101H1;0.22641!10204-103F6;0.559823!10191-103E2;0.789565!10563-108A5;0.00726302
|name=5-GCTTSYTGTTTW,CNhs13238,BestGuess:SPIB_f1_HM09(0.586435832002115),T:131.0(5.05%),B:636.6(1.45%),P:1e-32
|name=5-GCTTSYTGTTTW,CNhs13238,BestGuess:SPIB_f1_HM09(0.586435832002115),T:131.0(5.05%),B:636.6(1.45%),P:1e-32
|tomtom_result=IXR1#MA0323.1;4;0.000562709;0.267849;0.535699;11;GCTTGCTGTTTT;CCCCGCTTCCGGCTT;-!mirr#MA0233.1;-6;0.00466728;2.22163;1;5;GCTTGCTGTTTT;TGTTT;-!Foxd3#MA0041.1;0;0.00606569;2.88727;1;12;GCTTGCTGTTTT;GAATGTTTGTTT;+!HCM1#MA0317.1;-5;0.00901813;4.29263;1;7;GCTTGCTGTTTT;TTGTTTAT;-!ara#MA0210.1;-6;0.00909973;4.33147;1;5;GCTTGCTGTTTT;TGTTA;-!br_Z3#MA0012.1;-1;0.0103018;4.90367;1;11;GCTTGCTGTTTT;CTTTTAGTTTA;-!RUNX1#MA0002.2;0;0.0126487;6.02078;1;11;GCTTGCTGTTTT;GTCTGTGGTTT;+!BRCA1#MA0133.1;-5;0.0209799;9.98645;1;7;GCTTGCTGTTTT;GTGTTGT;-!onecut#MA0235.1;-5;0.0209799;9.98645;1;7;GCTTGCTGTTTT;TTGATTT;+
}}
}}

Latest revision as of 14:48, 7 September 2012

Full Name: 5-GCTTSYTGTTTW,CNhs13238,BestGuess:SPIB_f1_HM09(0.586435832002115),T:131.0(5.05%),B:636.6(1.45%),P:1e-32

Motif matrix
POACGT
10.3931.048129.4280.131
219.781106.5033.1441.572
339.82427.3791.04862.618
450.0421.0485.10974.801
523.44941.52751.74514.279
631.96451.87612.31434.846
72.09610.61124.23594.058
80.13114.67289.60426.593
930.91623.44918.73357.902
102.0961.5721.572125.76
1120.8292.09630.39277.683
1232.7519.25728.55850.435

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
IXR1#MA0323.140.0005627090.2678490.53569911GCTTGCTGTTTTCCCCGCTTCCGGCTT-
mirr#MA0233.1-60.004667282.2216315GCTTGCTGTTTTTGTTT-
Foxd3#MA0041.100.006065692.88727112GCTTGCTGTTTTGAATGTTTGTTT+
HCM1#MA0317.1-50.009018134.2926317GCTTGCTGTTTTTTGTTTAT-
ara#MA0210.1-60.009099734.3314715GCTTGCTGTTTTTGTTA-
br_Z3#MA0012.1-10.01030184.90367111GCTTGCTGTTTTCTTTTAGTTTA-
RUNX1#MA0002.200.01264876.02078111GCTTGCTGTTTTGTCTGTGGTTT+
BRCA1#MA0133.1-50.02097999.9864517GCTTGCTGTTTTGTGTTGT-
onecut#MA0235.1-50.02097999.9864517GCTTGCTGTTTTTTGATTT+
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