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MacroAPE 1083:15-NNNTDAGHAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;77.51;72.118;107.503;80.206!2;101.437;80.543;90.653;64.704!3;64.03;80.206;82.902;109.862!4;1.348;2.022;1.348;332.282!5;84.924;55.605;122.668...")
 
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8567!10828-111C9;0.763109!10788-110H5;0.903061!10792-110H9;0.713497!10765-110E9;0.573779!10829-111D1;0.819738!10830-111D2;0.550914!10831-111D3;0.902831!10832-111D4;0.778837!10833-111D5;0.330656!10764-110E8;0.681561!10770-110F5;0.834826!10399-106A3;0.895604!10400-106A4;0.341066!10405-106A9;0.398068!10834-111D6;0.281815!10835-111D7;0.871563!10836-111D8;0.898283!10837-111D9;0.685513!10699-109G6;0.712677!10802-111A1;0.337489!10796-110I4;0.641078!10010-101C1;0.316782!10810-111A9;0.95213!10421-106C7;0.0420576!10708-109H6;0.420438!12235-129G3;0.851696!12236-129G4;0.528323!12237-129G5;0.0137809!10167-103B5;0.174641!10151-102I7;0.806759!10428-106D5;0.761201!10795-110I3;0.951893!10805-111A4;0.790273!10052-101G7;0.740269!10189-103D9;0.926849!10589-108D4;0.581315!10425-106D2;0.968964!10427-106D4;0.557554!10702-109G9;0.732359!10432-106D9;0.316529!10496-107C1;0.756068!10718-109I7;0.600797!10011-101C2;0.519844!10053-101G8;0.811363!10686-109F2;0.661579!10084-102B3;0.966525!10012-101C3;0.376644!10085-102B4;0.548529!10482-107A5;0.131513!10419-106C5;0.0594152!10080-102A8;0.217009!10760-110E4;0.638792!10709-109H7;0.805417!10710-109H8;0.45893!10703-109H1;0.183597!10719-109I8;0.0851517!10642-109A3;0.370938!10177-103C6;0.133146!10164-103B2;0.933102!10173-103C2;0.985402!10166-103B4;0.215835!10083-102B2;0.294503!10188-103D8;0.119017!10552-107I3;0.686707!10553-107I4;0.592077!10013-101C4;0.130466!10536-107G5;0.808096!10618-108G6;0.573271!10423-106C9;0.356877!10785-110H2;0.49426!12238-129G6;0.588461!12239-129G7;0.766944!12240-129G8;0.960525!10416-106C2;0.921926!10801-110I9;0.857701!10766-110F1;0.974497!10824-111C5;0.804256!10825-111C6;0.824298!10826-111C7;0.784067!10454-106G4;0.827346!10409-106B4;0.746041!10638-108I8;0.365055!10636-108I6;0.549525!10513-107D9;0.317642!10420-106C6;0.728789!10082-102B1;0.212478!10014-101C5;0.841624!10070-101I7;0.706677!10452-106G2;0.790137!10453-106G3;0.626946!10449-106F8;0.729831!10042-101F6;0.496172!10069-101I6;0.884674!10193-103E4;0.842554!10631-108I1;0.789025!10438-106E6;0.455166!10488-107B2;0.100501!10196-103E7;0.977514!10071-101I8;0.95246!10071-101I8;0.580928!10041-101F5;0.18854!10451-106G1;0.9386!10450-106F9;0.373544!10604-108F1;0.445865!10605-108F2;0.114027!10606-108F3;0.237301!10603-108E9;0.0948002!10497-107C2;0.313984!10448-106F7;0.961042!10643-109A4;0.62035!10426-106D3;0.766239!10431-106D8;0.695583!10197-103E8;0.641821!10443-106F2;0.784471!10815-111B5;0.0184993!10816-111B6;0.975893!10817-111B7;0.848444!10015-101C6;0.948127!10410-106B5;0.741798!10054-101G9;0.595519!10758-110E2;0.417798!10711-109H9;0.894117!10040-101F4;0.0811515!10470-106I2;0.220813!10415-106C1;0.19504!10198-103E9;0.353919!10614-108G2;0.650005!10612-108F9;0.426823!10549-107H9;0.819792!10615-108G3;0.189328!10487-107B1;0.788286!10433-106E1;0.417144!10688-109F4;0.596431!10444-106F3;0.779976!10444-106F3;0.15213!10485-107A8;0.231607!10413-106B8;0.195354!10175-103C4;0.562739!10161-103A8;0.590566!12131-128D7;0.692846!10624-108H3;0.550799!10712-109I1;0.517545!10205-103F7;0.509961!10206-103F8;0.846131!10207-103F9;0.953097!10050-101G5;0.776963!10051-101G6;0.479098!10016-101C7;0.400122!10046-101G1;0.764611!10778-110G4;0.667919!10633-108I3;0.770003!10818-111B8;0.788781!10819-111B9;0.246628!10820-111C1;0.309792!10484-107A7;0.319249!10808-111A7;0.516085!10169-103B7;0.934139!10153-102I9;0.888203!13425-144D5;0.807131!13433-144E4;0.39317!13437-144E8;0.491785!11904-125F5;0.265212!11905-125F6;0.945529!10039-101F3;0.983327!10791-110H8;0.337578!10017-101C8;0.898624!10045-101F9;0.724834!10509-107D5;0.765735!10839-111E2;0.524625!10692-109F8;0.376876!10079-102A7;0.489296!10078-102A6;0.774039!10721-110A1;0.658356!10569-108B2;0.635494!10570-108B3;0.155721!10571-108B4;0.169977!10647-109A8;0.212602!10752-110D5;0.517801!10782-110G8;0.820929!10726-110A6;0.949181!10018-101C9;0.843657!10086-102B5;0.709575!10182-103D2;0.052508!10165-103B3;0.597173!10499-107C4;0.957565!10408-106B3;0.526857!10019-101D1;0.17449!10068-101I5;0.820858!10075-102A3;0.53935!10077-102A5;0.998435!10727-110A7;0.680806!10775-110G1;0.105155!10412-106B7;0.516813!12231-129F8;0.221235!12232-129F9;0.527776!12233-129G1;0.595755!12234-129G2;0.593128!10414-106B9;0.983205!10170-103B8;0.844301!10183-103D3;0.363918!10150-102I6;0.444574!10174-103C3;0.481568!10155-103A2;0.422657!10038-101F2;0.827338!10838-111E1;0.975207!10759-110E3;0.475135!10514-107E1;0.1411!10465-106H6;0.551913!10691-109F7;0.7622!10843-111E6;0.481604!10844-111E7;0.0526652!11747-123G1;0.0948194!11748-123G2;0.845197!11749-123G3;0.911202!11750-123G4;0.256921!11751-123G5;0.883859!11840-124H4;0.969432!11752-123G6;0.142809!11753-123G7;0.472406!11754-123G8;0.966529!11755-123G9;0.539318!11756-123H1;0.845839!11833-124G6;0.538087!11760-123H5;0.334889!11836-124G9;0.328329!11758-123H3;0.596691!11835-124G8;0.369583!11762-123H7;0.195652!11838-124H2;0.39603!11757-123H2;0.189306!11759-123H4;0.511298!11761-123H6;0.653347!11842-124H6;0.23456!11837-124H1;0.186047!10568-108B1;0.41538!13230-141I8;0.562626!13231-141I9;0.450231!10696-109G3;0.688685!10493-107B7;0.908293!10494-107B8;0.608915!10850-111F4;0.7885!10851-111F5;0.211033!10852-111F6;0.488819!10853-111F7;0.871027!10854-111F8;0.502748!10855-111F9;0.883721!10856-111G1;0.727132!10847-111F1;0.174273!10846-111E9;0.584488!10848-111F2;0.28854!10845-111E8;0.351004!10857-111G2;0.830357!10858-111G3;0.963719!10156-103A3;0.664857!11901-125F2;0.442844!11902-125F3;0.642146!11903-125F4;0.504753!10689-109F5;0.90532!10648-109A9;0.786493!10784-110H1;0.624949!10744-110C6;0.296209!10772-110F7;0.238071!10474-106I6;0.998522!10600-108E6;0.116994!10684-109E9;0.531954!12226-129F3;0.0729193!12227-129F4;0.83146!10508-107D4;0.00955882!10539-107G8;0.0240536!10607-108F4;0.286821!10555-107I6;0.686374!10774-110F9;0.0668706!10637-108I7;0.566945!10663-109C6;0.0536909!10728-110A8;0.689403!10729-110A9;0.145852!10430-106D7;0.468899!10730-110B1;0.139272!10813-111B3;0.583386!10812-111B2;0.569077!10037-101F1;0.855988!10172-103C1;0.43678!10163-103B1;0.139492!10076-102A4;0.425383!10073-102A1;0.340532!10036-101E9;0.174823!10195-103E6;0.220549!10277-104E7;0.452938!10434-106E2;0.445666!10550-107I1;0.540207!10545-107H5;0.436907!10544-107H4;0.376915!10704-109H2;0.311918!10510-107D6;0.563559!10558-107I9;0.0191989!10020-101D2;0.125683!10732-110B3;0.75973!10049-101G4;0.332171!10698-109G5;0.684535!10437-106E5;0.788808!10417-106C3;0.930091!10035-101E8;0.735229!10171-103B9;0.280763!10157-103A4;0.369245!10034-101E7;0.491711!10072-101I9;0.337292!10199-103F1;0.136866!10200-103F2;0.524552!10697-109G4;0.861811!10723-110A3;0.807317!10179-103C8;0.583026!10160-103A7;0.900753!10180-103C9;0.65195!10162-103A9;0.346642!10021-101D3;0.0872709!10840-111E3;0.555864!10706-109H4;0.924593!10033-101E6;0.354694!10032-101E5;0.604882!10490-107B4;0.303943!10439-106E7;0.282542!10022-101D4;0.113627!10176-103C5;0.615949!10469-106I1;0.677139!10067-101I4;0.732547!10411-106B6;0.368264!10471-106I3;0.36997!10030-101E3;0.537108!10475-106I7;0.65035!10787-110H4;0.215495!10477-106I9;0.0448826!10695-109G2;0.045506!11771-123I7;0.909127!11772-123I8;0.740379!11773-123I9;0.00820011!10093-102C3;0.0253587!10442-106F1;0.201049!10442-106F1;0.591615!10201-103F3;0.72184!10639-108I9;0.944552!11843-124H7;0.764461!11841-124H5;0.763239!10693-109F9;0.704711!10436-106E4;0.0637439!10483-107A6;0.552787!10282-104F3;0.23398!10023-101D5;0.710275!10066-101I3;0.702142!10065-101I2;0.918639!10800-110I8;0.580835!10610-108F7;0.341563!10841-111E4;0.678485!10541-107H1;0.279403!10842-111E5;0.375909!10562-108A4;0.176358!10024-101D6;0.557904!10064-101I1;0.781877!10609-108F6;0.732165!10048-101G3;0.10105!10781-110G7;0.922358!10181-103D1;0.499985!10159-103A6;0.68661!10056-101H2;0.849997!10737-110B8;0.721148!10025-101D7;0.638374!10044-101F8;0.813518!10424-106D1;0.753779!10463-106H4;0.718845!10616-108G4;0.857886!10486-107A9;0.400917!10062-101H8;0.689791!10202-103F4;0.730399!10158-103A5;0.260982!10441-106E9;0.341289!10031-101E4;0.0651219!10063-101H9;0.376708!10063-101H9;0.193013!11763-123H8;0.952633!11765-123I1;0.863238!11768-123I4;0.488026!10807-111A6;0.522224!10790-110H7;0.430762!10798-110I6;0.463466!10786-110H3;0.36452!10591-108D6;0.938994!10593-108D8;0.912344!10590-108D5;0.435939!10026-101D8;0.807149!10096-102C6;0.634668!10168-103B6;0.995187!10154-103A1;0.941799!10209-103G2;0.900017!10061-101H7;0.817826!10027-101D9;0.524778!10043-101F7;0.131303!10783-110G9;0.341123!10028-101E1;0.171673!10060-101H6;0.948714!10203-103F5;0.571144!10059-101H5;0.77112!10047-101G2;0.473556!10029-101E2;0.753589!10058-101H4;0.954055!10418-106C4;0.656971!10492-107B6;0.28813!10694-109G1;0.355679!10797-110I5;0.889063!10057-101H3;0.685257!10100-102D1;0.830275!10055-101H1;0.728727!10204-103F6;0.904403!10191-103E2;0.902187!10563-108A5;0.671667
|name=15-NNNTDAGHAA,CNhs11954,BestGuess:BATF_si_HM09(0.732951413982858),T:337.0(4.60%),B:775.9(1.87%),P:1e-47
|name=15-NNNTDAGHAA,CNhs11954,BestGuess:BATF_si_HM09(0.732951413982858),T:337.0(4.60%),B:775.9(1.87%),P:1e-47
|tomtom_result=fkh#MA0446.1;-2;0.000716723;0.34116;0.545004;8;GATTGAGTAA;TTAAGCAAACA;-!Fos#MA0099.1;-2;0.00134782;0.641563;0.545004;8;GATTGAGTAA;GTGAGTCA;+!Foxa2#MA0047.2;-1;0.00237347;1.12977;0.545004;9;GATTGAGTAA;CCTAAGTAAACA;-!Cebpa#MA0102.1;2;0.00280617;1.33574;0.545004;10;GATTGAGTAA;GAGATTGCGAAA;-!GCN4#MA0303.1;4;0.00332254;1.58153;0.545004;10;GATTGAGTAA;CAAGGGATGAGTCATACTTCA;+!AP1#MA0099.2;-3;0.0034394;1.63716;0.545004;7;GATTGAGTAA;TGAGTCA;-!CEBPA#MA0102.2;-1;0.0055073;2.62148;0.630552;9;GATTGAGTAA;ATTGCGAAA;-!FOXA1#MA0148.1;-2;0.00596892;2.8412;0.630552;8;GATTGAGTAA;CAAAGTAAACA;-!HLF#MA0043.1;0;0.0118611;5.6459;0.789635;10;GATTGAGTAA;TATTACGTAACC;-!MCM1#MA0331.1;2;0.0118611;5.6459;0.789635;10;GATTGAGTAA;CCCAATTAGGAA;+!FOXC1#MA0032.1;-1;0.0123373;5.87254;0.789635;8;GATTGAGTAA;GGTAAGTA;+!MAC1#MA0326.1;-3;0.0123373;5.87254;0.789635;7;GATTGAGTAA;TGAGCAAA;-!TBP#MA0386.1;-1;0.015365;7.31372;0.789635;9;GATTGAGTAA;GACTAGATATATATATTCGAT;+!YAP7#MA0419.1;-2;0.0159881;7.61032;0.789635;8;GATTGAGTAA;ATTAGTAAGCA;+!slbo#MA0244.1;-3;0.0162706;7.74478;0.789635;7;GATTGAGTAA;TTTGCAAT;-!Trl#MA0205.1;0;0.0163994;7.8061;0.789635;10;GATTGAGTAA;GAGAGAGCAA;-!z#MA0255.1;-2;0.0163994;7.8061;0.789635;8;GATTGAGTAA;TTGAGTGATT;+!Tal1::Gata1#MA0140.1;7;0.0170406;8.11133;0.789635;10;GATTGAGTAA;CTTATCTGTCCCCACCAG;-!SPT2#MA0387.1;0;0.0175025;8.33119;0.789635;10;GATTGAGTAA;AATTAAAGAA;+
}}
}}

Latest revision as of 14:59, 7 September 2012

Full Name: 15-NNNTDAGHAA,CNhs11954,BestGuess:BATF_si_HM09(0.732951413982858),T:337.0(4.60%),B:775.9(1.87%),P:1e-47

Motif matrix
POACGT
177.5172.118107.50380.206
2101.43780.54390.65364.704
364.0380.20682.902109.862
41.3482.0221.348332.282
584.92455.605122.66873.803
6202.8740.674130.7562.696
70.337118.624217.7020.337
888.968111.212.022134.8
9171.87113.23247.184.718
10270.27465.7150.3370.674

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
fkh#MA0446.1-20.0007167230.341160.5450048GATTGAGTAATTAAGCAAACA-
Fos#MA0099.1-20.001347820.6415630.5450048GATTGAGTAAGTGAGTCA+
Foxa2#MA0047.2-10.002373471.129770.5450049GATTGAGTAACCTAAGTAAACA-
Cebpa#MA0102.120.002806171.335740.54500410GATTGAGTAAGAGATTGCGAAA-
GCN4#MA0303.140.003322541.581530.54500410GATTGAGTAACAAGGGATGAGTCATACTTCA+
AP1#MA0099.2-30.00343941.637160.5450047GATTGAGTAATGAGTCA-
CEBPA#MA0102.2-10.00550732.621480.6305529GATTGAGTAAATTGCGAAA-
FOXA1#MA0148.1-20.005968922.84120.6305528GATTGAGTAACAAAGTAAACA-
HLF#MA0043.100.01186115.64590.78963510GATTGAGTAATATTACGTAACC-
MCM1#MA0331.120.01186115.64590.78963510GATTGAGTAACCCAATTAGGAA+
FOXC1#MA0032.1-10.01233735.872540.7896358GATTGAGTAAGGTAAGTA+
MAC1#MA0326.1-30.01233735.872540.7896357GATTGAGTAATGAGCAAA-
TBP#MA0386.1-10.0153657.313720.7896359GATTGAGTAAGACTAGATATATATATTCGAT+
YAP7#MA0419.1-20.01598817.610320.7896358GATTGAGTAAATTAGTAAGCA+
slbo#MA0244.1-30.01627067.744780.7896357GATTGAGTAATTTGCAAT-
Trl#MA0205.100.01639947.80610.78963510GATTGAGTAAGAGAGAGCAA-
z#MA0255.1-20.01639947.80610.7896358GATTGAGTAATTGAGTGATT+
Tal1::Gata1#MA0140.170.01704068.111330.78963510GATTGAGTAACTTATCTGTCCCCACCAG-
SPT2#MA0387.100.01750258.331190.78963510GATTGAGTAAAATTAAAGAA+
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