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MacroAPE 1083:4-GCYTCTYTBTTTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;10.784;212.984;2469.536;2.696!2;59.312;1620.296;72.792;943.6!3;132.104;1194.328;72.792;1299.472!4;72.792;644.344;544.592;1434.272!5;2.696;18...")
 
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11C9;0.517221!10788-110H5;0.776433!10792-110H9;0.394686!10765-110E9;0.533415!10829-111D1;0.610601!10830-111D2;0.355438!10831-111D3;0.621185!10832-111D4;0.635516!10833-111D5;0.743681!10764-110E8;0.56361!10770-110F5;0.911438!10399-106A3;0.687176!10400-106A4;0.774814!10405-106A9;0.73518!10834-111D6;0.902847!10835-111D7;0.647964!10836-111D8;0.50886!10837-111D9;0.196171!10699-109G6;0.120719!10802-111A1;0.320202!10796-110I4;0.129942!10010-101C1;0.953462!10810-111A9;0.498599!10421-106C7;0.941878!10708-109H6;0.300442!12235-129G3;0.186679!12236-129G4;0.899568!12237-129G5;0.127176!10167-103B5;0.996132!10151-102I7;0.198302!10428-106D5;0.0934612!10795-110I3;0.812563!10805-111A4;0.11889!10052-101G7;0.961807!10189-103D9;0.437379!10589-108D4;0.0511067!10425-106D2;0.297827!10427-106D4;0.994217!10702-109G9;0.949867!10432-106D9;0.521277!10496-107C1;0.939057!10718-109I7;0.918484!10011-101C2;0.91318!10053-101G8;0.382383!10686-109F2;0.974347!10084-102B3;0.416408!10012-101C3;0.232882!10085-102B4;0.160204!10482-107A5;0.193003!10419-106C5;0.704926!10080-102A8;0.897794!10760-110E4;0.274868!10709-109H7;0.864244!10710-109H8;0.210221!10703-109H1;0.694669!10719-109I8;0.720228!10642-109A3;0.722292!10177-103C6;0.790584!10164-103B2;0.11256!10173-103C2;0.13277!10166-103B4;0.22167!10083-102B2;0.175772!10188-103D8;0.357727!10552-107I3;0.206893!10553-107I4;0.693697!10013-101C4;0.931528!10536-107G5;0.312014!10618-108G6;0.544591!10423-106C9;0.276902!10785-110H2;0.428533!12238-129G6;0.184522!12239-129G7;0.721092!12240-129G8;0.310736!10416-106C2;0.505508!10801-110I9;0.40551!10766-110F1;0.289135!10824-111C5;0.35182!10825-111C6;0.239962!10826-111C7;0.241971!10454-106G4;0.319663!10409-106B4;0.394724!10638-108I8;0.619374!10636-108I6;0.530181!10513-107D9;0.281773!10420-106C6;0.807484!10082-102B1;0.85614!10014-101C5;0.221545!10070-101I7;0.698572!10452-106G2;0.346605!10453-106G3;0.799941!10449-106F8;0.987777!10042-101F6;0.890489!10069-101I6;0.221576!10193-103E4;0.489161!10631-108I1;0.181975!10438-106E6;0.928413!10488-107B2;0.378632!10196-103E7;0.433346!10071-101I8;0.511961!10071-101I8;0.3392!10041-101F5;0.0904003!10451-106G1;0.222678!10450-106F9;0.974715!10604-108F1;0.915535!10605-108F2;0.574187!10606-108F3;0.438757!10603-108E9;0.809582!10497-107C2;0.14595!10448-106F7;0.83308!10643-109A4;0.976505!10426-106D3;0.661712!10431-106D8;0.851835!10197-103E8;0.577572!10443-106F2;0.600602!10815-111B5;0.297928!10816-111B6;0.548329!10817-111B7;0.963034!10015-101C6;0.559933!10410-106B5;0.476544!10054-101G9;0.678051!10758-110E2;0.383393!10711-109H9;0.599373!10040-101F4;0.819758!10470-106I2;0.167608!10415-106C1;0.329594!10198-103E9;0.703051!10614-108G2;0.360227!10612-108F9;0.180937!10549-107H9;0.958378!10615-108G3;0.835407!10487-107B1;0.73502!10433-106E1;0.944625!10688-109F4;0.240812!10444-106F3;0.516058!10444-106F3;0.942568!10485-107A8;0.83757!10413-106B8;0.0651227!10175-103C4;0.62068!10161-103A8;0.180779!12131-128D7;0.126814!10624-108H3;0.591463!10712-109I1;0.938858!10205-103F7;0.33083!10206-103F8;0.362224!10207-103F9;0.535902!10050-101G5;0.152825!10051-101G6;0.251405!10016-101C7;0.459973!10046-101G1;0.296052!10778-110G4;0.0917309!10633-108I3;0.492848!10818-111B8;0.408177!10819-111B9;0.216961!10820-111C1;0.202899!10484-107A7;0.183547!10808-111A7;0.235929!10169-103B7;0.850973!10153-102I9;0.0922751!13425-144D5;0.0811793!13433-144E4;0.76661!13437-144E8;0.883773!11904-125F5;0.930756!11905-125F6;0.444853!10039-101F3;0.94411!10791-110H8;0.164513!10017-101C8;0.744439!10045-101F9;0.557631!10509-107D5;0.0433527!10839-111E2;0.511233!10692-109F8;0.795101!10079-102A7;0.964738!10078-102A6;0.924222!10721-110A1;0.782993!10569-108B2;0.377427!10570-108B3;0.341794!10571-108B4;0.0835416!10647-109A8;0.32721!10752-110D5;0.78109!10782-110G8;0.307365!10726-110A6;0.858945!10018-101C9;0.826011!10086-102B5;0.857086!10182-103D2;0.880684!10165-103B3;0.171194!10499-107C4;0.140118!10408-106B3;0.900303!10019-101D1;0.498054!10068-101I5;0.13842!10075-102A3;0.0185414!10077-102A5;0.0677401!10727-110A7;0.346983!10775-110G1;0.694255!10412-106B7;0.470311!12231-129F8;0.193391!12232-129F9;0.394904!12233-129G1;0.205624!12234-129G2;0.212765!10414-106B9;0.353539!10170-103B8;0.591463!10183-103D3;0.120849!10150-102I6;0.101791!10174-103C3;0.0672058!10155-103A2;0.281754!10038-101F2;0.180199!10838-111E1;0.18555!10759-110E3;0.660007!10514-107E1;0.612405!10465-106H6;0.154591!10691-109F7;0.861449!10843-111E6;0.15922!10844-111E7;0.924839!11747-123G1;0.463783!11748-123G2;0.129659!11749-123G3;0.115147!11750-123G4;0.383875!11751-123G5;0.255115!11840-124H4;0.112287!11752-123G6;0.185875!11753-123G7;0.65322!11754-123G8;0.475464!11755-123G9;0.716349!11756-123H1;0.765952!11833-124G6;0.814927!11760-123H5;0.395332!11836-124G9;0.81566!11758-123H3;0.60286!11835-124G8;0.453006!11762-123H7;0.355141!11838-124H2;0.347925!11757-123H2;0.24878!11759-123H4;0.753347!11761-123H6;0.959456!11842-124H6;0.394804!11837-124H1;0.562073!10568-108B1;0.301291!13230-141I8;0.710872!13231-141I9;0.532422!10696-109G3;0.518274!10493-107B7;0.457304!10494-107B8;0.366683!10850-111F4;0.674368!10851-111F5;0.107538!10852-111F6;0.0659169!10853-111F7;0.00285495!10854-111F8;0.661899!10855-111F9;0.122036!10856-111G1;0.197755!10847-111F1;0.0577989!10846-111E9;0.453782!10848-111F2;0.130542!10845-111E8;0.224826!10857-111G2;0.375225!10858-111G3;0.125591!10156-103A3;0.290438!11901-125F2;0.0751103!11902-125F3;0.246835!11903-125F4;0.107838!10689-109F5;0.129653!10648-109A9;0.948185!10784-110H1;0.233366!10744-110C6;0.915608!10772-110F7;0.713188!10474-106I6;0.722474!10600-108E6;0.449193!10684-109E9;0.340137!12226-129F3;0.219328!12227-129F4;0.413038!10508-107D4;0.000493702!10539-107G8;0.752259!10607-108F4;0.289261!10555-107I6;0.521717!10774-110F9;0.939956!10637-108I7;0.45569!10663-109C6;0.392321!10728-110A8;0.0653542!10729-110A9;0.454137!10430-106D7;0.151515!10730-110B1;0.695231!10813-111B3;0.946681!10812-111B2;0.648312!10037-101F1;0.327132!10172-103C1;0.155359!10163-103B1;0.0660122!10076-102A4;0.0617702!10073-102A1;0.139942!10036-101E9;0.20778!10195-103E6;0.193048!10277-104E7;0.242!10434-106E2;0.203288!10550-107I1;0.678415!10545-107H5;0.594378!10544-107H4;0.14336!10704-109H2;0.328755!10510-107D6;0.0997071!10558-107I9;0.648734!10020-101D2;0.371921!10732-110B3;0.357553!10049-101G4;0.223245!10698-109G5;0.482339!10437-106E5;0.462188!10417-106C3;0.865335!10035-101E8;0.460966!10171-103B9;0.166931!10157-103A4;0.139456!10034-101E7;0.0528858!10072-101I9;0.176941!10199-103F1;0.0601222!10200-103F2;0.660776!10697-109G4;0.637227!10723-110A3;0.852345!10179-103C8;0.5432!10160-103A7;0.300447!10180-103C9;0.17617!10162-103A9;0.741654!10021-101D3;0.204604!10840-111E3;0.0894997!10706-109H4;0.943678!10033-101E6;0.426864!10032-101E5;0.305443!10490-107B4;0.168207!10439-106E7;0.799285!10022-101D4;0.308187!10176-103C5;0.381413!10469-106I1;0.190977!10067-101I4;0.349507!10411-106B6;0.127233!10471-106I3;0.401546!10030-101E3;0.0354755!10475-106I7;0.189626!10787-110H4;0.971415!10477-106I9;0.464316!10695-109G2;0.554894!11771-123I7;0.28162!11772-123I8;0.392728!11773-123I9;0.90359!10093-102C3;0.360018!10442-106F1;0.415349!10442-106F1;0.857789!10201-103F3;0.887367!10639-108I9;0.394807!11843-124H7;0.12485!11841-124H5;0.332617!10693-109F9;0.958104!10436-106E4;0.801183!10483-107A6;0.946466!10282-104F3;0.158386!10023-101D5;0.333258!10066-101I3;0.347867!10065-101I2;0.723519!10800-110I8;0.397476!10610-108F7;0.328339!10841-111E4;0.645289!10541-107H1;0.203824!10842-111E5;0.46628!10562-108A4;0.845132!10024-101D6;0.422295!10064-101I1;0.896279!10609-108F6;0.560268!10048-101G3;0.730669!10781-110G7;0.409333!10181-103D1;0.953255!10159-103A6;0.152358!10056-101H2;0.183231!10737-110B8;0.127211!10025-101D7;0.565358!10044-101F8;0.0462017!10424-106D1;0.00440902!10463-106H4;0.472741!10616-108G4;0.591748!10486-107A9;0.665594!10062-101H8;0.984582!10202-103F4;0.0646235!10158-103A5;0.403583!10441-106E9;0.317418!10031-101E4;0.513414!10063-101H9;0.158117!10063-101H9;0.112197!11763-123H8;0.197865!11765-123I1;0.446772!11768-123I4;0.37798!10807-111A6;0.125278!10790-110H7;0.993363!10798-110I6;0.847926!10786-110H3;0.559814!10591-108D6;0.968222!10593-108D8;0.893775!10590-108D5;0.944161!10026-101D8;0.789027!10096-102C6;0.326105!10168-103B6;0.0978751!10154-103A1;0.158314!10209-103G2;0.170858!10061-101H7;0.289308!10027-101D9;0.155573!10043-101F7;0.333889!10783-110G9;0.0198285!10028-101E1;0.890446!10060-101H6;0.142095!10203-103F5;0.150109!10059-101H5;0.483161!10047-101G2;0.438699!10029-101E2;0.058651!10058-101H4;0.274975!10418-106C4;0.230105!10492-107B6;0.471517!10694-109G1;0.802064!10797-110I5;0.150965!10057-101H3;0.317816!10100-102D1;0.145934!10055-101H1;0.222296!10204-103F6;0.192626!10191-103E2;0.169167!10563-108A5;0.540085
|name=4-GCYTCTYTBTTTTT,CNhs11796,BestGuess:FOXA1:AR/LNCAP-AR-ChIP-Seq/Homer(0.631391267927214),T:2696.0(53.42%),B:19698.2(45.15%),P:1e-31
|name=4-GCYTCTYTBTTTTT,CNhs11796,BestGuess:FOXA1:AR/LNCAP-AR-ChIP-Seq/Homer(0.631391267927214),T:2696.0(53.42%),B:19698.2(45.15%),P:1e-31
|tomtom_result=HMG-I/Y#MA0045.1;0;0.000248902;0.118477;0.154451;14;GCTTCTTTGTTTTT;GTTTTTCCATTTGTTG;-!Klf4#MA0039.1;-4;0.000436089;0.207578;0.154451;10;GCTTCTTTGTTTTT;CCTTCCTTTA;-!AZF1#MA0277.1;-5;0.00048684;0.231736;0.154451;9;GCTTCTTTGTTTTT;TTTCTTTTT;-!TBP#MA0108.2;-3;0.00116119;0.552728;0.221035;11;GCTTCTTTGTTTTT;CCCCGCCTTTTATAC;-!TBP#MA0108.2;-3;0.00116119;0.552728;0.221035;11;GCTTCTTTGTTTTT;CCCCGCCTTTTATAC;-!id1#MA0120.1;-4;0.00524882;2.49844;0.716989;10;GCTTCTTTGTTTTT;TTTTCCTTTTCG;+!D#MA00445.1;-3;0.00527332;2.5101;0.716989;11;GCTTCTTTGTTTTT;TCCATTGTTCT;+!FKH1#MA0296.1;-2;0.00833628;3.96807;0.991766;12;GCTTCTTTGTTTTT;TCCTCTTTGTTTACAATTCA;-!RUNX1#MA0002.2;-2;0.0107219;5.10362;0.999747;11;GCTTCTTTGTTTTT;GTCTGTGGTTT;+!SFL1#MA0377.1;7;0.0114631;5.45645;0.999747;14;GCTTCTTTGTTTTT;TTTTATTTCTTCTATTCTCTA;-!NDT80#MA0343.1;-4;0.0126394;6.01636;0.999747;10;GCTTCTTTGTTTTT;TTGCGTTTTTGTGGCCGGAAA;-!br_Z3#MA0012.1;-4;0.014234;6.77539;0.999747;10;GCTTCTTTGTTTTT;CTTTTAGTTTA;-!squamosa#MA0082.1;-2;0.0147633;7.02732;0.999747;12;GCTTCTTTGTTTTT;ATTTCCATTTTTGG;-!kni#MA0451.1;-1;0.0190832;9.08358;0.999747;12;GCTTCTTTGTTTTT;GTGCTCTAGTTT;-
}}
}}

Latest revision as of 18:17, 7 September 2012

Full Name: 4-GCYTCTYTBTTTTT,CNhs11796,BestGuess:FOXA1:AR/LNCAP-AR-ChIP-Seq/Homer(0.631391267927214),T:2696.0(53.42%),B:19698.2(45.15%),P:1e-31

Motif matrix
POACGT
110.784212.9842469.5362.696
259.3121620.29672.792943.6
3132.1041194.32872.7921299.472
472.792644.344544.5921434.272
52.6961871.024237.248585.032
624.264860.02472.7921738.92
72.6961027.176628.1681037.96
835.048711.744428.6641520.544
9299.256609.296895.072892.376
10285.776382.832593.121434.272
11514.936450.232358.5681372.264
1270.0962.696296.562326.648
13107.8459.312310.042218.808
14107.842.696334.3042251.16

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HMG-I/Y#MA0045.100.0002489020.1184770.15445114GCTTCTTTGTTTTTGTTTTTCCATTTGTTG-
Klf4#MA0039.1-40.0004360890.2075780.15445110GCTTCTTTGTTTTTCCTTCCTTTA-
AZF1#MA0277.1-50.000486840.2317360.1544519GCTTCTTTGTTTTTTTTCTTTTT-
TBP#MA0108.2-30.001161190.5527280.22103511GCTTCTTTGTTTTTCCCCGCCTTTTATAC-
TBP#MA0108.2-30.001161190.5527280.22103511GCTTCTTTGTTTTTCCCCGCCTTTTATAC-
id1#MA0120.1-40.005248822.498440.71698910GCTTCTTTGTTTTTTTTTCCTTTTCG+
D#MA00445.1-30.005273322.51010.71698911GCTTCTTTGTTTTTTCCATTGTTCT+
FKH1#MA0296.1-20.008336283.968070.99176612GCTTCTTTGTTTTTTCCTCTTTGTTTACAATTCA-
RUNX1#MA0002.2-20.01072195.103620.99974711GCTTCTTTGTTTTTGTCTGTGGTTT+
SFL1#MA0377.170.01146315.456450.99974714GCTTCTTTGTTTTTTTTTATTTCTTCTATTCTCTA-
NDT80#MA0343.1-40.01263946.016360.99974710GCTTCTTTGTTTTTTTGCGTTTTTGTGGCCGGAAA-
br_Z3#MA0012.1-40.0142346.775390.99974710GCTTCTTTGTTTTTCTTTTAGTTTA-
squamosa#MA0082.1-20.01476337.027320.99974712GCTTCTTTGTTTTTATTTCCATTTTTGG-
kni#MA0451.1-10.01908329.083580.99974712GCTTCTTTGTTTTTGTGCTCTAGTTT-
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