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MCL coexpression mm9:369: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0019145;aminobutyraldehyde dehydrogenase activity;0.0359392976497014;56752!GO:0004139;deoxyribose-phosphate aldolase activity;0.0359392976497014;232449!GO:0004454;ketohexokinase activity;0.0359392976497014;16548!GO:0003951;NAD+ kinase activity;0.0461798253473553;192185!GO:0030099;myeloid cell differentiation;0.0461798253473553;12675,14057!GO:0007252;I-kappaB phosphorylation;0.0461798253473553;12675!GO:0008384;IkappaB kinase activity;0.0461798253473553;12675!GO:0009264;deoxyribonucleotide catabolic process;0.0478757600170195;232449!GO:0009437;carnitine metabolic process;0.0478757600170195;56752!
|gostat_on_MCL_coexpression=GO:0019145;aminobutyraldehyde dehydrogenase activity;0.0359392976497014;56752!GO:0004139;deoxyribose-phosphate aldolase activity;0.0359392976497014;232449!GO:0004454;ketohexokinase activity;0.0359392976497014;16548!GO:0003951;NAD+ kinase activity;0.0461798253473553;192185!GO:0030099;myeloid cell differentiation;0.0461798253473553;12675,14057!GO:0007252;I-kappaB phosphorylation;0.0461798253473553;12675!GO:0008384;IkappaB kinase activity;0.0461798253473553;12675!GO:0009264;deoxyribonucleotide catabolic process;0.0478757600170195;232449!GO:0009437;carnitine metabolic process;0.0478757600170195;56752!
}}
}}

Revision as of 12:40, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:120353209..120353235,+p1@Slc25a10
Mm9::chr11:120353243..120353263,+p3@Slc25a10
Mm9::chr11:96891239..96891311,+p1@Scrn2
Mm9::chr13:54167229..54167278,+p1@Sfxn1
Mm9::chr17:12868652..12868673,-p4@Slc22a1
Mm9::chr19:44144226..44144277,-p1@Erlin1
Mm9::chr19:44181916..44181931,-p2@Chuk
Mm9::chr1:133693960..133693995,+p1@Pm20d1
Mm9::chr1:13658820..13658853,+p1@Xkr9
Mm9::chr1:13659082..13659121,+p@chr1:13659082..13659121
+
Mm9::chr1:169280107..169280196,+p2@Aldh9a1
Mm9::chr1:169280315..169280365,+p1@Aldh9a1
Mm9::chr1:169280377..169280380,+p@chr1:169280377..169280380
+
Mm9::chr1:59030534..59030545,+p6@Stradb
Mm9::chr1:59030546..59030561,+p7@Stradb
Mm9::chr1:93339454..93339482,+p@chr1:93339454..93339482
+
Mm9::chr4:154937907..154937974,+p1@Nadk
Mm9::chr5:31223940..31223956,+p4@Khk
Mm9::chr5:31224198..31224239,+p2@Khk
Mm9::chr5:31224240..31224269,+p1@Khk
Mm9::chr6:137703123..137703129,+p2@Dera


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019145aminobutyraldehyde dehydrogenase activity0.0359392976497014
GO:0004139deoxyribose-phosphate aldolase activity0.0359392976497014
GO:0004454ketohexokinase activity0.0359392976497014
GO:0003951NAD+ kinase activity0.0461798253473553
GO:0030099myeloid cell differentiation0.0461798253473553
GO:0007252I-kappaB phosphorylation0.0461798253473553
GO:0008384IkappaB kinase activity0.0461798253473553
GO:0009264deoxyribonucleotide catabolic process0.0478757600170195
GO:0009437carnitine metabolic process0.0478757600170195



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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