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MCL coexpression mm9:641: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0005536;glucose binding;0.00542376595628116;56017!GO:0015284;fructose uniporter activity;0.00542376595628116;56017!GO:0015757;galactose transport;0.00542376595628116;56017!GO:0004192;cathepsin D activity;0.00542376595628116;13033!GO:0015755;fructose transport;0.00542376595628116;56017!GO:0005354;galactose transmembrane transporter activity;0.00542376595628116;56017!GO:0015292;uniporter activity;0.00542376595628116;56017!GO:0008516;hexose uniporter activity;0.00542376595628116;56017!GO:0005353;fructose transmembrane transporter activity;0.00964092987743474;56017!GO:0003923;GPI-anchor transamidase activity;0.0130134726345087;276846!GO:0004194;pepsin A activity;0.0315262134324555;13033!GO:0005355;glucose transmembrane transporter activity;0.0340455772610801;56017!GO:0015145;monosaccharide transmembrane transporter activity;0.0340455772610801;56017!GO:0015149;hexose transmembrane transporter activity;0.0340455772610801;56017!GO:0004190;aspartic-type endopeptidase activity;0.0475920528897136;13033!GO:0006506;GPI anchor biosynthetic process;0.0475920528897136;276846!GO:0048029;monosaccharide binding;0.0475920528897136;56017!GO:0046489;phosphoinositide biosynthetic process;0.0475920528897136;276846!GO:0001666;response to hypoxia;0.0475920528897136;56017!GO:0006505;GPI anchor metabolic process;0.0475920528897136;276846!GO:0008286;insulin receptor signaling pathway;0.0484175615673511;56017!GO:0015758;glucose transport;0.0484175615673511;56017!GO:0044444;cytoplasmic part;0.0484175615673511;13033,18220,56017,276846!GO:0008645;hexose transport;0.0484175615673511;56017!GO:0015749;monosaccharide transport;0.0484175615673511;56017!GO:0046474;glycerophospholipid biosynthetic process;0.049867069573456;276846!
|gostat_on_MCL_coexpression=GO:0005536;glucose binding;0.00542376595628116;56017!GO:0015284;fructose uniporter activity;0.00542376595628116;56017!GO:0015757;galactose transport;0.00542376595628116;56017!GO:0004192;cathepsin D activity;0.00542376595628116;13033!GO:0015755;fructose transport;0.00542376595628116;56017!GO:0005354;galactose transmembrane transporter activity;0.00542376595628116;56017!GO:0015292;uniporter activity;0.00542376595628116;56017!GO:0008516;hexose uniporter activity;0.00542376595628116;56017!GO:0005353;fructose transmembrane transporter activity;0.00964092987743474;56017!GO:0003923;GPI-anchor transamidase activity;0.0130134726345087;276846!GO:0004194;pepsin A activity;0.0315262134324555;13033!GO:0005355;glucose transmembrane transporter activity;0.0340455772610801;56017!GO:0015145;monosaccharide transmembrane transporter activity;0.0340455772610801;56017!GO:0015149;hexose transmembrane transporter activity;0.0340455772610801;56017!GO:0004190;aspartic-type endopeptidase activity;0.0475920528897136;13033!GO:0006506;GPI anchor biosynthetic process;0.0475920528897136;276846!GO:0048029;monosaccharide binding;0.0475920528897136;56017!GO:0046489;phosphoinositide biosynthetic process;0.0475920528897136;276846!GO:0001666;response to hypoxia;0.0475920528897136;56017!GO:0006505;GPI anchor metabolic process;0.0475920528897136;276846!GO:0008286;insulin receptor signaling pathway;0.0484175615673511;56017!GO:0015758;glucose transport;0.0484175615673511;56017!GO:0044444;cytoplasmic part;0.0484175615673511;13033,18220,56017,276846!GO:0008645;hexose transport;0.0484175615673511;56017!GO:0015749;monosaccharide transport;0.0484175615673511;56017!GO:0046474;glycerophospholipid biosynthetic process;0.049867069573456;276846!
}}
}}

Revision as of 12:44, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79132158..79132204,+p@chr10:79132158..79132204
+
Mm9::chr11:78141927..78141974,+p1@Pigs
Mm9::chr2:131005721..131005828,-p1@Cenpb
Mm9::chr2:32837527..32837606,-p1@Slc2a8
Mm9::chr5:120953602..120953636,-p1@Plbd2
Mm9::chr5:24092539..24092612,+p1@Chpf2
Mm9::chr7:149573800..149573811,-p3@Ctsd
Mm9::chr7:52765770..52765783,-p2@Nucb1
Mm9::chr8:26127724..26127777,+p1@Tm2d2
Mm9::chr8:26127778..26127792,+p2@Tm2d2
Mm9::chrX:71638550..71638606,-p2@Fam3a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005536glucose binding0.00542376595628116
GO:0015284fructose uniporter activity0.00542376595628116
GO:0015757galactose transport0.00542376595628116
GO:0004192cathepsin D activity0.00542376595628116
GO:0015755fructose transport0.00542376595628116
GO:0005354galactose transmembrane transporter activity0.00542376595628116
GO:0015292uniporter activity0.00542376595628116
GO:0008516hexose uniporter activity0.00542376595628116
GO:0005353fructose transmembrane transporter activity0.00964092987743474
GO:0003923GPI-anchor transamidase activity0.0130134726345087
GO:0004194pepsin A activity0.0315262134324555
GO:0005355glucose transmembrane transporter activity0.0340455772610801
GO:0015145monosaccharide transmembrane transporter activity0.0340455772610801
GO:0015149hexose transmembrane transporter activity0.0340455772610801
GO:0004190aspartic-type endopeptidase activity0.0475920528897136
GO:0006506GPI anchor biosynthetic process0.0475920528897136
GO:0048029monosaccharide binding0.0475920528897136
GO:0046489phosphoinositide biosynthetic process0.0475920528897136
GO:0001666response to hypoxia0.0475920528897136
GO:0006505GPI anchor metabolic process0.0475920528897136
GO:0008286insulin receptor signaling pathway0.0484175615673511
GO:0015758glucose transport0.0484175615673511
GO:0044444cytoplasmic part0.0484175615673511
GO:0008645hexose transport0.0484175615673511
GO:0015749monosaccharide transport0.0484175615673511
GO:0046474glycerophospholipid biosynthetic process0.049867069573456



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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