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MCL coexpression mm9:2608: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0050062;long-chain-fatty-acyl-CoA reductase activity;0.00405390596887041;!GO:0010025;wax biosynthetic process;0.00405390596887041;!GO:0010166;wax metabolic process;0.00405390596887041;!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0293698834960756;!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0307801434482401;!GO:0006633;fatty acid biosynthetic process;0.0355912997721088;!GO:0046394;carboxylic acid biosynthetic process;0.0355912997721088;!GO:0016053;organic acid biosynthetic process;0.0355912997721088;!GO:0042579;microbody;0.0355912997721088;!GO:0005777;peroxisome;0.0355912997721088;!
|gostat_on_MCL_coexpression=GO:0050062;long-chain-fatty-acyl-CoA reductase activity;0.00405390596887041;!GO:0010025;wax biosynthetic process;0.00405390596887041;!GO:0010166;wax metabolic process;0.00405390596887041;!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0293698834960756;!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0307801434482401;!GO:0006633;fatty acid biosynthetic process;0.0355912997721088;!GO:0046394;carboxylic acid biosynthetic process;0.0355912997721088;!GO:0016053;organic acid biosynthetic process;0.0355912997721088;!GO:0042579;microbody;0.0355912997721088;!GO:0005777;peroxisome;0.0355912997721088;!
}}
}}

Revision as of 13:15, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:94038962..94038965,+p20@Tmcc3
Mm9::chr10:94038999..94039015,+p2@Tmcc3
Mm9::chr6:147995931..147995946,+p1@Far2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0050062long-chain-fatty-acyl-CoA reductase activity0.00405390596887041
GO:0010025wax biosynthetic process0.00405390596887041
GO:0010166wax metabolic process0.00405390596887041
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor0.0293698834960756
GO:0016903oxidoreductase activity, acting on the aldehyde or oxo group of donors0.0307801434482401
GO:0006633fatty acid biosynthetic process0.0355912997721088
GO:0046394carboxylic acid biosynthetic process0.0355912997721088
GO:0016053organic acid biosynthetic process0.0355912997721088
GO:0042579microbody0.0355912997721088
GO:0005777peroxisome0.0355912997721088



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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